Tesis por compendio / El presente proyecto de investigación está enfocado al desarrollo de sensores químicos fluoro-cromogénicos, para la detección y determinación de especies químicas de interés biológico, industrial y medioambiental de forma selectiva y con alta sensibilidad. En forma general, se busca el diseñar nuevos sistemas sensores basados en compuestos (receptores) formados por dos unidades: una unidad coordinante que interacciona con el anión a determinar y una unidad generadora de señal que alerta del reconocimiento molecular efectuado. Durante este estudio se están preparando diversas moléculas receptoras funcionalizandas con grupos modificadores de estructura para evaluar su influencia sobre las capacidades de detección y selectividad como receptores de especies específicas en diferentes condiciones y medios. Las diferentes aproximaciones en prueba implican a su vez el diseño y síntesis molecular, así como el análisis de las diferentes señales ópticas producidas en el reconocimiento, con el fin de diseñar sistemas de alta eficacia y eficiencia, y con posibilidades reales de aplicación. / Santos Figueroa, LE. (2014). New approaches for the development of chromo-fluorogenic sensors for chemical species of biological, industrial and environmental interest [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/43216 / TESIS / Premios Extraordinarios de tesis doctorales / Compendio

Hydrocarbons are an abundant resource of carbon and hydrogen. For example, fossil can be used to produce useful organic compounds. However hydrocarbons seem to be inert. Thus, the activation of the C-H bond is a popular research area. Metals play the main role in most catalysts that convert hydrocarbons to starting materials in industry. The study of metals is important because the properties of the metal core greatly influences the reactivity of a catalyst.1 The study of the chemistry of metals in the gas phase provides valuable information about the properties of metals. This information can be expanded to the chemistry of metals in the condensed phase. Furthermore, it is often both more accurate and more manageable to study the profile of a reaction in the gas phase than in the condensed phase.2,3 There are many studies about metal cations in the gas phase due to ease of their production. However metals have low electronegativity, limiting the study of gas phase metal anions. Recently, a simple and efficient method to generate atomic metal anions was developed at the University of Ottawa in Dr. Mayer's research laboratory.4-6 Atomic metal anions of Fe-, Co-, Cu-, Ag-, Cs- and K- were generated in an electrospray ionization (ESI) source of a mass spectrometer (MS). In this thesis study generated metal anions were reacted with small hydrocarbons of pentane, 1-pentene, 2-pentene and 1-pentyne to investigate the role of different metal anions in the activation of the C-H bond. Also metal anions were reacted with small alcohols of 1-butanol, 2-butanol and 2-methyl-2-propanol to compare the results. Metal anions showed a variety of reactions with these hydrocarbons and alcohols. Fe- was the only metal anion to show the electron transfer reaction, indicating that alcohols are more electronegative than Fe- and less electronegative than other metal anions. Fe-, Co- and Ag- showed the complex formation reaction. All metal anions showed the deprotonation reaction. A deprotonation reaction follows the harpoon mechanism, the long range proton abstraction7, and depends on the gas phase acidity of fragments. The most informative reaction observed was the dehydrogenation reaction because a metal-containing fragment is observed as a product in the spectrum of this reaction. The observation of a metal-containing fragment in the spectrum is significant because it emphasizes the important role that metal anions play in this reaction. This suggests that a dehydrogenation reaction involves metal insertion into a C-H bond. Among the transition metal anions, it was observed that Fe- and Cu- are more reactive than Co- and Ag- with regards to the dehydrogenation reaction, probably because Fe- and Cu- have a greater hydrogen affinity than Co- and Ag- that facilitates the hydrogen abstraction reaction. Another reason could be that Fe- and Cu- have a greater gas phase acidity that leads to a more stable intermediate in the course of the reaction. The results of this thesis study revealed that Cs- and K- could not abstract H from these substrates, probably due to the absence of occupied d orbitals that would facilitate insertion into a C-H bond. Some metal anions not only can insert into a C-H bond of alcohols but also can insert into a C-O bond of alcohols to form metal hydroxide anions. Alcohols are more reactive than hydrocarbons with regards to reactions with metal anions because they contain a functional group. This thesis study shows that some atomic metal anions are able to activate the C-H bond and abstract two hydrogens to form a double bond in hydrocarbons. It is probable that the electronic configuration, gas phase acidity and hydrogen affinity of the metal anions governs their reactivity.

Hydrocarbons are an abundant resource of carbon and hydrogen. For example, fossil can be used to produce useful organic compounds. However hydrocarbons seem to be inert. Thus, the activation of the C-H bond is a popular research area. Metals play the main role in most catalysts that convert hydrocarbons to starting materials in industry. The study of metals is important because the properties of the metal core greatly influences the reactivity of a catalyst.1 The study of the chemistry of metals in the gas phase provides valuable information about the properties of metals. This information can be expanded to the chemistry of metals in the condensed phase. Furthermore, it is often both more accurate and more manageable to study the profile of a reaction in the gas phase than in the condensed phase.2,3 There are many studies about metal cations in the gas phase due to ease of their production. However metals have low electronegativity, limiting the study of gas phase metal anions. Recently, a simple and efficient method to generate atomic metal anions was developed at the University of Ottawa in Dr. Mayer's research laboratory.4-6 Atomic metal anions of Fe-, Co-, Cu-, Ag-, Cs- and K- were generated in an electrospray ionization (ESI) source of a mass spectrometer (MS). In this thesis study generated metal anions were reacted with small hydrocarbons of pentane, 1-pentene, 2-pentene and 1-pentyne to investigate the role of different metal anions in the activation of the C-H bond. Also metal anions were reacted with small alcohols of 1-butanol, 2-butanol and 2-methyl-2-propanol to compare the results. Metal anions showed a variety of reactions with these hydrocarbons and alcohols. Fe- was the only metal anion to show the electron transfer reaction, indicating that alcohols are more electronegative than Fe- and less electronegative than other metal anions. Fe-, Co- and Ag- showed the complex formation reaction. All metal anions showed the deprotonation reaction. A deprotonation reaction follows the harpoon mechanism, the long range proton abstraction7, and depends on the gas phase acidity of fragments. The most informative reaction observed was the dehydrogenation reaction because a metal-containing fragment is observed as a product in the spectrum of this reaction. The observation of a metal-containing fragment in the spectrum is significant because it emphasizes the important role that metal anions play in this reaction. This suggests that a dehydrogenation reaction involves metal insertion into a C-H bond. Among the transition metal anions, it was observed that Fe- and Cu- are more reactive than Co- and Ag- with regards to the dehydrogenation reaction, probably because Fe- and Cu- have a greater hydrogen affinity than Co- and Ag- that facilitates the hydrogen abstraction reaction. Another reason could be that Fe- and Cu- have a greater gas phase acidity that leads to a more stable intermediate in the course of the reaction. The results of this thesis study revealed that Cs- and K- could not abstract H from these substrates, probably due to the absence of occupied d orbitals that would facilitate insertion into a C-H bond. Some metal anions not only can insert into a C-H bond of alcohols but also can insert into a C-O bond of alcohols to form metal hydroxide anions. Alcohols are more reactive than hydrocarbons with regards to reactions with metal anions because they contain a functional group. This thesis study shows that some atomic metal anions are able to activate the C-H bond and abstract two hydrogens to form a double bond in hydrocarbons. It is probable that the electronic configuration, gas phase acidity and hydrogen affinity of the metal anions governs their reactivity.

Das grundlegende Verständnis der Adsorption, der Eigenschaften, und der Wechselwirkungen von komplexen organischen Molekülen auf Festkörperoberflächen ist für die Entwicklung neuer Anwendungen in der Nanotechnologie von entscheidender Bedeutung. Die in dieser Arbeit untersuchten funktionellen Bausteine gehören zu den Porphyrinen und Phthalocyaninen. Deren Adsorption, elektronische Struktur, und Reaktionen der Moleküle auf Edelmetalloberflächen wurden mit mehreren Methoden charakterisiert, insbesondere der Rastertunnelmikroskopie, Rastertunnelspektroskopie, Röntgen-Nahkanten-Absorptions-Spektroskopie und Photoelektronenspektroskopie, welche zudem durch theoretische Simulationen unter Verwendung der Dichtefunktionaltheorie ergänzt wurden. Tetra(p-hydroxyphenyl)porphyrin Moleküle ordnen sich durch Selbstorganisation zu verschiedenen, durch Wasserstoffbrückenbindungen stabilisierten Nanostrukturen an, welche in Abhängigkeit von dem Substratoberflächengitter untersucht wurden um das komplizierte Zusammenspiel von Molekül−Molekül und Molekül−Substrat-Wechselwirkungen bei der Selbstorganisation zu verstehen. Erhitzen der Adsorbatschichten dieses Moleküls führt zu einer schrittweisen Deprotonierung, und außerdem konnte auch ein Schalten der Leitfähigkeit einzelner Porphyrin-Moleküle durch lokale Deprotonierung mittels Spannungspulsen demonstriert werden. Eine Polymerisationsreaktion, welche auf der Ullmann-Reaktion basiert, aber direkt auf einer Oberfläche stattfindet, wurde für Kupfer-octabromotetraphenylporphyrin Moleküle, die auf Au(111) adsorbiert sind, gefunden. Nach einer thermischen Abspaltung der Bromatome von den Molekülen reagieren dabei die Radikalmoleküle bei hohen Temperaturen miteinander und bilden geordnete, kovalent gebundene Netzwerke aus. Die Bromabspaltung und die nachfolgenden Reaktionen und Veränderungen der elektronischen Struktur der Moleküle wurden ausführlich für die Substratoberflächen Au(111) sowie Ag(110) untersucht. Weiterhin, wird die Adsorption und Selbstorganisation von metall-freien Phthalocyanin-Molekülen auf einer Ag(110)-Oberfläche, und deren Selbstmetallierungsreaktion mit Silberatomen des Substrats umfassend und verständlich beschrieben. Zuletzt wurden organische Hybrid-Grenzflächen zwischen verschiedenen Metall-Phthalocyaninen untersucht, wobei ein Ladungstransfer zwischen Kobalt- und Platin-Phthalocyanin-Molekülen gefunden wurde. Dotierung gemischter Metall-Phthalocyanin-Filme durch Einlagerung von Kaliumatomen und deren selektive Adsorption im Molekülgitter führt zu einer deutlichen Veränderung der elektronischen Eigenschaften, aufgrund einer Ladungsübertragung an die Kobalt-Phthalocyanin Moleküle.:List of publications List of abbreviations 1 Introduction 2 Methods 2.1 Scanning tunneling microscopy 2.1.1 Theoretical description 2.1.2 STM imaging modes 2.1.3 Scanning tunneling spectroscopy 2.1.4 Technical aspect of the STM instrument 2.2 Low energy electron diffraction 2.3 Photoelectron spectroscopy 2.3.1 Principle 2.3.2 Theoretical description 2.3.3 Initial state effects 2.3.4 Final state effects 2.3.5 X-ray source 2.3.6 Technical aspects of PES 2.3.7 Resonant Photoelectron spectroscopy 2.4 Near-edge X-ray absorption fine structure spectroscopy 2.4.1 Principle 2.4.2 Polarization dependence 2.5 Density Functional Theory 2.5.1 Fundamental equations 2.5.2 Exchange-correlation functionals 2.5.3 Dispersion correction 2.5.4 Hubbard U correction 2.5.5 Basis set 2.5.6 Grid-based projector augmented wave (GPAW) method 2.6 Fundamentals of epitaxy and growth of molecular films 3 Experimental and computational details 3.1 Experimental setup 3.2 Sample preparation 3.3 Technical details for measurements 3.3.1 STM 3.3.2 PES 3.3.3 NEXAFS 3.4 Computational details 4 Metal-free tetra(p-hydroxylphenyl)porphyrin (H2THPP) 4.1 Interplay of hydrogen bonding and molecule-substrate interaction in self-assembled supra-molecular structures of H2THPP 4.1.1 Adlayer structures of H2THPP on Au(111) 4.1.2 Adlayer structures of H2THPP on Ag(111) 4.1.3 Adlayer structures of H2THPP on Ag(110) 4.1.4 Calculation of the adsorption energies and discussion 4.2 Manipulation of the electronic structure by local reversible dehydrogenation 4.2.1 STM and STS results 4.2.2 Discussion of the interconversion 4.2.3 Dosing of hydrogen gas on H2THPP 4.3 Photoelectron spectroscopy investigation of the temperature-induced deprotonation and substrate-mediated hydrogen transfer 4.3.1 Protonation and deprotonation at nitrogen atoms 4.3.2 Deprotonation at carbon atoms 4.3.3 Evolution of the valence band 4.4 Summary 5 Copper-octabromotetraphenylporphyrin (CuTPPBr8) 5.1 Introduction to surface-confined polymerization 5.2 Adsorption and polymerisation of CuTPPBr8 on Au(111) 5.2.1 XPS investigations 5.2.2 STM investigations of the molecular adlayer 5.2.3 DFT calculations 5.3 Adsorption and temperature-dependence of CuTPPBr8 on Ag(110) 5.3.1 XPS and NEXAFS investigations of CuTPPBr8 on Ag(110) 5.3.2 Adlayer structure and adsorption geometry of CuTPPBr8 on Ag(110) 5.4 Summary 6 Metal-free phthalocyanine (H2Pc) on Ag(110) 6.1 Adlayer structures of H2Pc on Ag(110) 6.2 Self-metalation of H2Pc on Ag(110) with silver surface atoms 6.2.1 Introduction to self-metalation 6.2.2 XPS investigations of the self-metalation 6.2.3 STM results of the self-metalation 6.2.4 DFT simulations of the metalation reaction path 6.3 Summary 7 Charge transfer in metallophthalocyanine blends and doping with potassium atoms 7.1 Charge transfer in platinum phthalocyanine – cobalt phthalocyanine dimers 7.1.1 XPS of PtPc−CoPc dimer layers 7.1.2 Resonant photoelectron spectroscopy of PtPc−CoPc dimer layers 7.2 Potassium doping of copper phthalocyanine − cobalt phthalocyanine mixed films 7.2.1 XPS of CuPc−CoPc mixed layers 7.2.2 UPS of CuPc−CoPc mixed layers 7.2.3 NEXAFS of CuPc−CoPc mixed layers 7.2.4 DFT calculations of the CuPc−CoPc dimer and K doping 7.3 Summary 8 Conclusion and outlook Bibliography Erklärung Lebenslauf Danksagung