Measuring and assessing vital rates such as births and deaths are prerequisites for understanding population dynamics. Vital rates may be affected by the density of individuals, even though the importance of density dependence on population dynamics has been debated for a long time. The mallard Anas platyrhynchos is one of the foremost game species in the Holarctic, with millions of birds in hunters’ bags annually. Still, basic knowledge about regulation of mallards’ vital rates is poor, and experimental studies on this topic are rare. In this thesis I have studied survival patterns and density dependence in mallards breeding in Sweden and Finland. Long-term ringing data from both countries were analysed for mortality patterns and causation, as well as for e.g. survival rate estimation. Most of the studies were, though, experiments run over two years involving manipulations of the density of nests, broods and/or adults, in southern and northern Sweden, comprising different biotic regions. Common response variables were survival of nests, ducklings and hens, mainly analysed with program MARK. About 90% of the recovered mallards in Finland and Sweden were hunting kills. However, survival rates were high, ranging from 0.66 to 0.81 for most groups (sex*age). The generality of density dependence was evident since such processes were detected in all studies. Consequently, depredation rate was higher in high nest density compared to low nest density. Survival of ducklings was density-dependent in both boreal and nemoral biotic regions, with food limitation being evident in the former region but not in the latter. In spite of their generality, density-dependent patterns varied within as well between years, and for nest predation rates also between landscape types. The findings about density dependence in breeding mallards in this thesis are novel since they are based on experiments. They are potentially of general interest for management because they embrace a variety of lakes in two geographically distant areas, each being representative for large temperate areas in the northern hemisphere. Detection of density dependence at the local scale may be important at larger scales, too, following the principle of ‘ideal preemptive distribution’ in a source-sink dynamic system.

This study is aimed at analysis of long-term and short-term changes in numbers of Red-crested Pochard (Netta rufina) in Třeboň region. This species is increasing in long-term period and it is also spreading into new localities in the Czech Republic. There were recorded two waves of arrival of Red-crested Pochard arrive, i.e. in April and in May. The total numbers were decreasing at the end of breeding season (from the beginning of July) in study area. The water surface area and area of littoral vegetation were found to be the most important factors affecting preference of individual ponds in pre-breeding season. Furthermore, water transparency seems to be important factor affecting numbers of broods, ducklings and adults in post-breeding season. Low numbers of broods per 1 female were recorded in years with high numbers of Red- crested Pochard at the start of breeding season. However, the frequency of brood parasitism was higher in these years. Key words: Netta rufina, Red-crested Pochard, population dynamics, ducks, breeding, numbers, brood parasitism, south Bohemia

Les virus influenza A ont suscité à partir de l’année 1997 un intérêtsanitaire et économique mondial considérable après l’émergence d’une formehautement pathogène d’un virus influenza aviaire H5N1. Cette épizootie a misen évidence le danger majeur que constitue la proximité entre espècessensibles sauvages et domestiques. En effet, pouvant présenter lescaractéristiques de réservoirs de ces virus, les canards étaient les plussoupçonnés de transmettre l’infection, grâce à une pratique migratoireimportante et d’un portage asymptomatique fréquent. Ce portage associe dans la plupart des cas des virus faiblement pathogènesde sous-types multiples. Ces virus peuvent se transmettre aux volaillesdomestiques et émerger en épizootie à virus hautement pathogène dans le casparticulier des sous-types H5 et H7. Ces épizooties peuvent avoir desconséquences économiques considérables, avec une mortalité avoisinant les100%, et sanitaire avec un possible passage à l’homme. Notre projet vise à caractériser l’infection et la transmission des virusinfluenza faiblement pathogènes, après inoculation expérimentale à unepopulation de canards de surface et plongeurs. Il répond également à lanécessité d’établir des méthodes de surveillance des virus influenzaaviaires à l’arrivé des oiseaux migrateurs dans des zones humides à richepatrimoine ornithologique, et situées à proximité de régions à fortpotentiel en matière de production avicole (La Dombes comme exemple). / Since 1997, influenza A viruses has given rise to great sanitary andeconomic interest after the emergence of a highly pathogenic subtype ofavian influenza virus H5N1. This epizooty underlined the threat that couldbe the closeness of wild and domestic birds. Ducks which were actuallyshowing reservoirs characteristics were suspected to pass on the virusthanks to their migratory habits and asymptomatic porterage.This porterage mostly involves low pathogenic viruses of numerous subtypes.Those viruses could be transmitted to domestic poultries and emerge, in thecase of H5 and H7 subtypes, in a viral highly pathogenic epizooty. Thoseepizooties may have major economic (average 100% mortality) and sanitary(possible transmission to humans) consequences.Our study aims to characterize the infection and the transmission of lowpathogenic avian influenza viruses, after experimental inoculation tosurface and diving ducks. It suggests setting up epidemiologic surveillancemethods of avian influenza viruses after the arrival of migratory birds inmost important wetlands, which are close to major poultry breeding regions(The Dombes for instance).

Les rizières constituent des habitats favorables pour les oiseaux d’eau, en particulier en tant que halte migratoire, zone de reproduction ou site d’alimentation hivernal. Dans ce dernier cas, la disponibilité des ressources alimentaires (grains de riz non ramassés, graines d’adventices ou invertébrés) semble être fortement influencée par les pratiques culturales post-récolte. Ce projet vise à tester des pratiques post-récolte alternatives au brûlage-labour traditionnellement mis en place en Camargue afin de mesurer les conséquences en termes de disponibilité de nourriture et de fréquentation des parcelles par les canards hivernants. Différents traitements post-récolte (inondation, brûlage, labour, disquage et leurs combinaisons) ont été testés. Nous avons réalisé un suivi de la quantité de graines (riz, adventices) disponibles au cours du temps, depuis la récolte en Septembre-Octobre jusqu'en Mars ainsi qu’un suivi de l'usage des parcelles par les canards pendant la journée et pendant la nuit. En parallèle, nous avons étudié les bénéfices agronomiques potentiels de certaines pratiques en interculure et nous avons cherché à identifier une solution mutuellement bénéfique, répondant aux besoins d’habitat d'hivernage des canards et à ceux des riziculteurs, le tout à moindre coût. / Rice fields provide foraging habitat to waterfowl during migration, breeding and wintering seasons. In the latter case, food availability (waste rice, weed seeds or invertebrates) seems to be strongly influenced by post-harvest agricultural practices. This project aims at testing alternative post-harvest practices to the traditional burning-mowing in the Camargue in order to assess their consequences in terms of food availability and field use by wintering ducks. Different post-harvest treatments (flooding, burning, mowing, disking and their combinations) were conducted. The amount of seeds (rice + weeds) available through time was assessed, from harvest in Sept-Oct until March, and duck use of these fields during the day and during the night was simultaneously monitored. In parallel, we studied potential agronomic benefit of specific post harvest practices and we searched a mutually beneficial solution that provides needed wintering ducks habitat and is acceptable to rice farmers with limited costs.

The human hepatitis B virus (HBV) is the prototype member of the Hepadnaviridae family of viruses. Various other hepadnaviruses are used as models to study human HBV infections as all Hepadnaviridae family members have similar virus structure and replication strategies. The studies performed and described in this thesis were carried out using duck hepatitis B virus (DHBV) infection of Pekin ducks as a model system. Hepadnavirus infections can have either an acute or a chronic outcome. The factors that contribute to these outcomes include the immune response, the age of the host at the time of infection as well as size of viral inoculum. The overall aim of this project was to gain a detailed understanding of the mechanisms involved in clearance of virus and resolution of acute DHBV infections. As a first step, molecular and immunohistochemical detection methods for a range of cellular markers in ducks had to be developed as assays were not readily available. Quantitative reverse transcription PCR assays (qRT-PCR) were developed for the detection of mRNA of the duck T-lymphocyte markers, CD3, CD4, CD8, duck cytokines, IFN-α, IFN-γ, TNF-α and the duck housekeeping genes, β-actin and GAPDH. Immunohistochemistry was developed for the detection of duck CD4 + and CD8 + on T cells and for the detection of proliferating cell nuclear antigen (PCNA) as a marker of cell proliferation. These methods were then widely used throughout the project. The innate immune response during HBV infections is not well understood. Toll-like receptors (TLR) are a family of pattern recognition receptors that form part of the innate immune response and are involved in the recognition of bacterial, fungal and viral pathogens. The only TLR that have been reported to recognise viral pathogens are TLR- 2, TLR-3, TLR-4, TLR-7 and TLR-9. The possible role of TLR during hepadnavirus infections had not been well characterized to date. In this project cDNA sequences for duck TLR-2, TLR-4 and TLR-7 were identified and characterised and qRT-PCR assays were developed for their detection. Changes in duck TLR-2, TLR-4 and TLR-7 mRNA expression during hepadnavirus infection were identified following DHBV infection of primary duck hepatocytes (PDH) in vitro. The results showed increased levels of expression of duck TLR early during infection indicating an involvement of TLR and the innate immune response during DHBV infection. During the in vivo DHBV infection studies performed to date TLR mRNA expression remained unchanged. As previously mentioned hepadnavirus infection can have an acute or chronic outcome. We aimed to understand the mechanisms involved during the resolution of acute DHBV infection and to elucidate specific factors contributing to the successful resolution of infection. During acute infections immune markers were monitored by qRT-PCR and histological analysis of fixed liver sections was performed. Liver sections were analysed to detect liver inflammation, the number and size of Kupffer cells, hepatocyte apoptosis and changes in hepatocyte proliferation throughout the course of acute DHBV infection in 6-week-old ducks. By determining the percentage of DHBV-positive hepatocytes two patterns of clearance of acute DHBV infection were observed; early clearance of infected hepatocytes occurring before day 14 post infection (p.i.), and late clearance occurring after day 14, but before or on day 31 p.i. This viral clearance was seen to occur in a cell by cell pattern. Higher levels of hepatocyte proliferation and apoptotic hepatocytes were detected during the clearance phase (on day 14 p.i.) of the late clearance group. Periodic acid schiff-diastase (PAS-D) staining was used to show significant increases in both cell number and size of Kupffer cells. Levels of IFN-γ mRNA increased significantly over the uninfected age-matched control ducks on day 14 p.i. Levels of CD3, CD4 and CD8 mRNA expression also increased over the uninfected controls on days 14 and 31 p.i. In summary, we found that resolution of acute DHBV infection occurred on a cell by cell pattern of clearance, it was accompanied by increases in hepatocyte proliferation, apoptotic hepatocytes and activated Kupffer cells, indicating that T lymphocytes and cell death play important roles in the rapid clearance of DHBV infection. Following resolution of acute hepadnaviral infections residual viral DNA has been found to persist. Residual HBV DNA in humans can result in reactivation of HBV infection following liver transplantation or immunosuppressive drug treatment. This leads to possible pathogenic outcomes thus the need for further investigations. Previous studies performed in the duck model have shown that the major form of residual DNA is present as covalently closed circular DNA (cccDNA). We aimed to understand how this residual cccDNA was being maintained and if replication was involved in the process. Following resolution of infection in ducks, levels of residual DHBV DNA were monitored by quantitative PCR (qPCR). Ducks were treated with the Bristol-Myers Squibb nucleoside analogue Entecavir (ETV) in order to suppress any possible replication that might be maintaining levels of residual cccDNA. In DHBV-infected but non-ETV treated ducks, the levels of residual DHBV DNA decreased gradually when measured on days 60, 221 and 316 p.i. The observed decrease in residual DHBV DNA occurred in parallel with decreases in the rate of hepatocyte proliferation measured by PCNA staining. This finding suggests that levels of residual DHBV DNA and hepatocyte proliferation are linked and we hypothesise that hepatocyte turnover is involved in the clearance of residual DHBV DNA. ETV treatment did not have an effect on the levels of residual DHBV DNA which suggests that it is present in a subset of long-lived hepatocytes that do not support virus replication. Mathematical modelling was performed to predict the rate of hepatocyte proliferation required for the elimination of residual cccDNA. The mathematical modelling showed that the predicted rate of hepatocyte proliferation was consistent with the rate of hepatocyte proliferation measured by PCNA. Further mathematical modelling showed that residual cccDNA is most likely to survive mitosis and it decreases due to several rounds of hepatocyte proliferation required for its elimination. Altogether, this project has elucidated mechanisms involved during the resolution of acute DHBV infection and also possible mechanisms by which residual DHBV DNA is maintained following resolution of infection. Detailed understanding of the virological and immunological events that occur during the resolution of an acute hepadnavirus infection would assist in the development of new therapeutic treatments for the cure of chronic HBV infections. / http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1345121 / Thesis (Ph.D.) - University of Adelaide, School of Molecular and Biomedical Science, 2008

Thesis (Ph.D.)--Mississippi State University. Department of Wildlife and Fisheries. / Title from title screen. Includes bibliographical references.

This thesis details the hydrodynamic research conducted at Delta Marsh as part of the Restoring the Tradition marsh rehabilitation project. Research has indicated that the hydraulic and hydrologic controls on the marsh can have considerable impacts on its ecological function, but the impacts of these controls had not previously been studied. Field hydrography and two-dimensional numerical modelling (using MIKE 21) provided insight into many aspects of the physical behaviour of Delta Marsh. Eighty five percent of the inflow to Delta Marsh from Lake Manitoba passes through Clandeboye Channel, and these discharge signals propagate as far west as Cadham Bay. Inflow to the marsh disperses quickly, and accounts for a small fraction of the water that exits the marsh during subsequent outflow. Thus, Portage Diversion water that enters the marsh through the lake can remain there even if there is a net loss in marsh volume over the season. Wind friction across Lake Manitoba has the greatest impact on short-term fluctuations in marsh volume and on the composition of marsh water, followed by the Portage Diversion and the natural inflows to Lake Manitoba. Expansions to flood diversion infrastructure will considerably impact the composition of Delta Marsh waters. Three methods of wetland discharge estimation were developed and tested. The most promising method was the regressed slope Manning method (RSMM), which estimates two-directional channel discharge as a function of the water surface elevations at both ends of a channel. When used in conjunction with the velocity index method, the RSMM can multiply the amount of reliable discharge data collected per research dollar. Thanks to its simple formulation, the RSMM is likely applicable outside of wetland settings, as well. / February 2016

No description available.

<p>  </p> <p>Glucocorticoids (GC) play a critical role in regulating the physiological response to stress. Disruptions to baseline levels due to stress can have negative implications on a variety of factors including growth and development, physical body conditions, metabolism, immune functions, and expression of normal behaviors, although this list is not exhaustive. When birds are unable to adapt to the stressor and return to homeostasis, the energy expenditure associated with the failed attempt at coping can lead to significant declines in the overall health, welfare, production, and performance of the bird. This can go on to impact producers and consumers as well, indicating the extensive repercussions of stress. Recently, scientists have been investigating thorough and efficient methods of quantifying stress in birds, such as measuring heterophil-to-lymphocyte ratio (HLR) or detecting glucocorticoid levels through enzyme-linked immunoassays (ELISA). However, the precise mechanism behind HLR increase during stress is unknown and ELISAs may not provide accurate results depending on when the blood is being measured. </p> <p><br></p> <p>GC are differentially released and exert their effects in a manner that is dependent on sex, age, and time. However, before investigating this, it was critical to validate the GC kits to ensure that they were measuring cortisol and corticosterone separately along with zero cross reactions with other precursors. Chapter 2 had 4 experiments carried out. The objective of experiment 1 was to validate ELISAs to ensure that they were measuring the GC accurately and separately since both cortisol and corticosterone were being measured. To do this, duck serum was pooled and charcoal-stripped to remove the presence of steroids. 3 standard curves were run to confirm that there was no cross reactivity. The objective of experiment 2 was to further validate the ELISA kits with mass spectrometry by checking for both glucocorticoids in the pooled samples. Once the validation process was complete, experiment 3 was carried out to look at the effect of ACTH stimulation on GC release. 16-week-old drakes and hens were given either intramuscular (IM) injections of cosyntropin (0.06 mg/kg) or saline as control. The cosyntropin dose was chosen according to previous studies reporting relatively high physiological responses, therefore, we wanted to replicate this. N was 10/sex/treatment. Blood was then collected at 0, 1, and 2 hours after injections and serum was analyzed by ELISAs. Lastly for experiment 4, 14-week-old developer drakes and hens at Maple Leaf Farms were assessed for a transportation stress experiment. Blood from 10 ducks/sex/time/barn were collected at 24 hours before transport to the breeder barn, immediately after a 1-hour transport, 24 hours after, and 1 week after transport. The results from experiment 1 yielded that both cortisol and corticosterone can be measured without the presence of unwanted contaminants or other products. Experiment 2 identified the greater sensitivity of mass spectrometry when reading GC levels, although the differences were linear. Experiment 3 showed that serum corticosterone levels were significantly increased at 1 hour after ACTH injections in both drakes and hens, with levels continuing to increase for the drakes. Serum cortisol levels were significantly increased at 1 hour after ACTH injections in both sexes, however, the hens had greater levels compared to the drakes. Serum cortisol levels returned to levels similar to that of saline-injected ducks at the 2-hour mark. Lastly, the transportation stress portion showed that cortisol was released at about 1/3 of corticosterone levels in both sexes. Hens showed increased levels of serum corticosterone compared to drakes at all time points except for 1 week after transport, and also had significantly increased serum cortisol levels at all time points. In conclusion, the ELISA kits were verified for future use when measuring GC as well as mass spectrometry. GC were detected in the ACTH and transportation stress experiments with hens displaying a greater sensitivity to GC release due to increased circulating levels compared to drakes. Although it was nonsignificant, there was a trend for GC to increase in response to transport. </p> <p><br></p> <p>There are sex differences in GC release and HLR for Pekin ducks and various challenges from the studies support this. With hens showing increased sensitivity to stress and drakes with more transient and gradual levels, we have consistently seen that both GC have differential roles in the stress response and not only is it critical to study both hormones, the timing of when measurements are taken are important as well to get a clear understanding of when the stress response is initiated. </p> <p><br></p> <p>Chapter 3 went further to understand the response of GC and HLR. The objective was to  investigate the release of cortisol and corticosterone in response to an ACTH dose response challenge. In Chapter 2, only one dose of cosyntropin was used and sample collection times only went to 2 hours after injections. In this study, 2 additional doses and an extra hour of sample collection were added to obtain more information. Pekin ducks were either given IM cosyntropin injections or saline for control, with an N of 10/sex/treatment. There were 3 treatment doses: High (0.06 mg/kg), medium (0.03 mg/kg), and low (0.015 mg/kg). All injections were given promptly at 0730 hours. Blood was collected at 0, 1, 2 and 3 hours after injections from the tibia veins to obtain serum for ELISAs. Blood smears were done to analyze HLR and sent to an independent lab to obtain values. The results indicated that both GC had significant sex x dose x time interactions. The low dose injection had no effect on corticosterone in hens with a slight increase for drakes at the first hour. The high dose for hens led to a spike in corticosterone levels at the first hour with a gradual decrease, and drakes had an increase that lasted for 2 hours until they returned to baseline at the last hour. The high dose in drakes stimulated cortisol release during the first 2 hours after injection with a similar effect in hens. However, hens had elevated levels compared to drakes. Finally, there was no dose response effect for HLR, although interestingly, the low dose injection elevated HLR even though there was no effect in GC. There were sex differences in the HLR response where the drakes given the high dose had levels that plateaued by the third hour, while the hens still had elevated levels. In conclusion, the ACTH dose-response test identified that ACTH has a dose-dependent effect in both GC and sex differences in their release. HLR also showed sex differences that did not depend on the dose given.</p> <p><br></p> <p>Chapter 4 observed acute exposure of GC in ducks. Pekin ducks were assigned 10/sex/treatment to receive either IM control, cortisol, or corticosterone injections. In addition, a low-dose cortisol treatment was given to represent the endogenous levels of cortisol compared to corticosterone. The control injections contained safflower oil, which was chosen as vehicle due to the low levels of genistein present. This is important as genistein is a plant estrogen and this could interact with the GC and alter the results. Blood was collected at 0, 1, 2, and 3 hours after injections for serum analysis with ELISAs, and blood smears were collected for complete blood count (CBC) differentials. Significant sex x treatment x time interactions were notable in both GC. Hens had significant increases at the first hour after injections in all treatments compared to controls, and drakes had increases at 2 hours after injections in all treatments except the low-dose cortisol. </p> <p><br></p> <p>After observing the effect of acute stress in ducks, the next step was to investigate the effects of chronic stress in chapter 5. Adult breeder Pekin ducks were randomly distributed into 3 groups: corticosterone, cortisol, or control treatments. The GC were in crystalline steroid form distributed through 2 capsules that were subcutaneously implanted on the backs of the neck. The ducks in the control group were given empty capsules. Blood smears, blood draws for serum, egg collection, body weights, and organ samples were collected over a period of 2 weeks. For the results, the corticosterone implants elevated corticosterone levels in both sexes. Interestingly, cortisol levels were elevated in both GC treatments in both sexes. Cortisol elevated HLR in drakes 1 day after implants with no effect from corticosterone. Hens had elevated HLR from both GC at all timepoints throughout the experiment. There were no significant differences in morphometrics in either sex. Corticosterone was not present in eggs, but cortisol was elevated in the albumen on day 7 and 14 of the experiment. Overall, there were sex differences in HLR where hens had greater levels in both GC treatments.</p>

No description available.