Global ETD Search

1	Population Status, Threats And Conservation Approaches For A Highly Threatened Endemic Plant, Centaurea Tchihatcheffii Fisch. &amp / Mey Erguner Baytok, Yasemin 01 October 2008 (has links) (PDF) Centaurea tchihatcheffii Fisch. &amp / Mey. is a critically endangered annual endemic plant found only in Ankara. This study aimed to determine its distributional range, metapopulation status, the effects of agricultural activities, and assess conservation options. Occurrences and population size estimates were carried out by ground surveys. Two adjacent subpopulations were intensively studied during 2004-2008. Plant and seed demographic data were collected in the field and by laboratory tests. Field experiments simulated the effects of agricultural practices. Risks of extinction and possible impacts of different management actions were investigated through a population viability analysis (PVA) by constructing a two-stage stochastic model. Six scenarios involving different management actions were run with 10,000 replications each using RAMAS Metapop. A total of 14 patchily distributed subpopulations were found to have an extent of occurrence of &gt / 700 km2. Herbicide applications caused extreme mortality and reduced germination success, and were shown to be the major anthropogenic threat against long-term survival of C. tchihatcheffii. Tillage led to an increase in density and reproductive success in the following year. PVA simulations for most scenarios predicted extinction of both subpopulations within 4 to 95 years, but a conservation management scenario involving delayed tillage ensured viable populations with a combined size of 21 million individuals. PVA results demonstrated that timing and frequency of tillage is crucial. Therefore, we propose tillage to be carried out after seed set every other year for protected subpopulations to ensure their long term persistence. Alternatively, unprotected subpopulations elsewhere can benefit from organic or nature-friendly farming. QK Plant Ecology 900-989
2	The Population Biology Of A Narrow Endemic, Centaurea Tchihatcheffii Fisch. &amp / Mey. (compositae), In Ankara, Turkey Cakarogullari, Didem 01 September 2005 (has links) (PDF) Centaurea tchihatcheffii Fisch. &amp / Mey. is a critically endangered annual plant species with a narrow distribution in G&ouml / lbaSi, Ankara. The aim of this study is to understand the population dynamics of the species to help find the best way to conserve species for long term viability. The two healthiest subpopulations containing more than 1.5 million individuals were studied to estimate demographic parameters i.e. survival and reproduction rates by monitoring marked individuals, to identify pollinators, dispersers and pollen &amp / seed predators and to investigate population status, natural threats and their effects. The species is considered a weed in cereal plantations, showing adaptations of ruderal habit: High population densities (~18.5-63.2 individuals/0.5 m2), persistent seed bank with many viable seeds (~20,000/m2), rapid growth matching favorable weather conditions (almost 15 weeks from rosette to flowering), high survival with premature deaths making up only 2-20% of natural deaths mostly at rosette stage, no density dependent mortality, seed production by selfing and crossing via generalist pollinators, high reproduction rates (1200-7000 seeds/m2) and promotion of growth on aerated soil whereas inhibition with herbicides. Insect and avian predators do not cause an important damage to population. Absence of mutualists aiding in pollination (honeybee) and dispersal (ants) is out of question. There is no natural limitation on population persistence. The major threats are anthropogenic, i.e. cereal cultivation, construction and collection of individuals from natural populations. Conservation of remaining subpopulations as a reserve and alternative methods in cereal cultivation like reduced or no herbicide application should be considered as high priority conservation strategies. QH General and Animal Ecology 540-549.5
3	Detecting structural variants in the DNA of the inbred Scandinavian wolf Huson, Lars January 2023 (has links) Only 40 years ago, just three individuals made the journey from Finland/Russia to found the current wolf population in the southwest of Sweden. This population, that to this date descends from less than 10 founders, has a substantial increased extinction risk due to inbreeding. Several previous studies have used SNPs to monitor the level of inbreeding and homozygosity in the population, as well as measure immigration and the inflow of new genetic material. This study uses both short- and long-read data to discover structural variants (SVs) and small indels in the population, so that they may be used to extend the analyses and provide more insight into the current state of the Scandinavian wolf population. After the calling of the SVs, strict filtering and manual curation were applied to the data, thereby removing many false positive calls and increasing confidence in the remaining SVs. Short-read and long-read SV-callers found 31,800 and 57,821 SVs respectively, with relatively little overlap between the two sets. By far, the most common SV-types were deletions and insertions, at about 30,000 each with varying length ranging from a 50 base pairs to several tens of Mbp. Analyses on the data, such as PCAs and parent-offspring trio analyses, reveal high-confidence calls and consistent results between SV-types and SV-callers, as well as a low estimated genotyping error rate. PCAs performed on the SVs resembled those performed on SNPs, which strengthens the credibility of the identified variants. Finally, this study suggests several alternative steps for possible improvement to the dataset, along with some proposals for subsequent research topics that may use the variants discovered in this study. animal animal population bioinformatics biological sciences biology Canis lupus CNV conservation genetics conservation genomics copy-number variation DNA endangered population endangered species evolution evolutionary biology extinction genetic diversity genetics genetic variation genomes genomics grey wolf inbreeding inbreeding depression indel mutation pedigree population genetics population genomics Scandinavia smoove snakemake structural variant SV wolf wolves Bioinformatics and Systems Biology Bioinformatik och systembiologi Genetics Genetik Evolutionary Biology Evolutionsbiologi

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