In this thesis I have given an account of the experimental work carried out by me at Rhodes University from the beginning of 1954 to the end of 1955, and the analysis of the results which was completed during the following two years, 1956 and 1957. The dissertation is divided into two sections; Part I deals with the photo fluorescence spectra of a large group of organic compounds, and Part 2 describes an investigation of the photo-fluorescence properties of and energy transfer in liquid organic solutions.

<p> An experimental study of vibrational energy transfer in ortho and para NH3(v2) is presented. The vibrational relaxation rates are necessary to characterize mid-IR pulsed and cw NH3 lasers, and the interpretation of these rates is of theoretical importance. Accurate information on the (V-T) process in NH3/N2 mixtures and the (V-V) energy transfer between ortho and para 15NH3 and 14NH3 is now available. </p> <p> First, NH 3 linestrengths and linewidths were accurately measured with a tunable diode laser (TDL) so that ammonia concentrations could be calculated from TDL scans. The energy transfer mechanisms were studied by exciting the v2 vibration of NH3 with a Q-switched cO2 laser and probing the subsequent changes in population with a TDL. A difference in v 2 lifetimes was observed between ortho and para NH3 transitions, and is explained by a (V-V) transfer of energy between the NH3 species. An isolated ortho 15NH3 absorption line was pumped and vibrational transfer of energy was observed to ortho and para 14NH3 and 15NH3. </p> / Thesis / Master of Science (MSc)

<p> The present investigation was concerned with mitochondrial energy transfer reactions and their relationship to mitochondrial structural integrity. Experiments with azide demonstrated a close relationship between oxidative phosphorylation and large amplitude mitochondrial volume changes. Azide inhibited energy transfer and energy-linked mitochondrial swelling by competing with adenine nucleotide for a site on the terminal phosphorylating enzyme. As a permeant anion azide exerted secondary effects on mitochondrial structure and function.</p> <p> Experiments with mitochondria treated with phlorizin and phloretin emphasized the importance of Mg++ as a controlling factor in maintaining the integrity of mitochondrial energy transfer processes. The results indicated that these compounds interfered directly with oxidative phosphorylation, and that mitochondrial swelling was either a consequence of impaired energy transfer, or a separate phenomenon.</p> / Thesis / Doctor of Philosophy (PhD)

Molecular beam scattering experiments are used to investigate the extent of thermal accommodation of Ne, CD4, ND3, and D2O in collisions with long chain CH3, NH2, and OH terminated self-assembled monolayers (SAMs) on gold. Surface rigidity, internal degrees of freedom of the impinging gas, and potential energy surface well depths have been explored as a way to predict the outcome of a gas-surface collision. Ne is used to assess the mechanical rigidity of the SAMs. The order of rigidity is CH3 < NH2 ~ OH. The NH2 and OH terminated SAMs are more rigid due to the intermolecular hydrogen bonding structure at the gas-surface interface. Despite the hydrogen bonding nature of the NH2 and OH terminated SAMs CD4, ND3, and D2O are extensively thermally accommodated on the surfaces, therefore surface rigidity is no solely responsible for energy transfer dynamics. It was found that the number of degrees of freedom do not predict how extensively a gas will thermally accommodate on a surface capable of hydrogen bonding. A qualitative correlation between increasing potential energy well depths and the extent of thermal accommodation has been established as a result of these scattering experiments. / Master of Science

Yes / FRET forms the basis for energy transfer in biological systems and organisms and it has become an investigative tool in the analysis of protein‐protein interactions and in the study of semiconductors (SC). Until now, FRET has been restricted to the simultaneous presence of both components in the same phase. Here, we report on the first successful prototype demonstrating interfacial FRET. This innovative FRET between inorganic SC‐nanoparticles and illuminating protein chimeras takes place across an oil/water interface. As a ′proof of concept′ oil droplets were stabilized by hydrophobin‐derivatives in aqueous solution. These proteins possess the ability to attach fused functional domains close to an interface. Moreover, an optically active nanostructure directly docks to the hydrophobin at the oil/water interface. Due to its modular design, this signal amplification array has the potential to be exploited in numerous fields ranging from biosensors, biotechnology to medical applications.

Yes / Dye-functionalized polymers have been extensively studied to understand polymer chain dynamics, intra or inter-molecular association and conformational changes as well as in practical applications such as signal amplification in diagnostic tests and light-harvesting antennas. In this work, the Förster resonance energy transfer (FRET) of dye-functionalized poly(2-ethyl-2-oxazoline) (PEtOx) was studied to evaluate the effect of dye positioning and polymer chain length on the FRET efficiency. Therefore, both α (initiating terminus)- or ω (terminal chain end)-fluorophore single labeled and dual α,ω-fluorescent dye labeled PEtOx were prepared via cationic ring opening polymerization (CROP) using 1-(bromomethyl)pyrene as the initiator and/or 1-pyrenebutyric acid or coumarin 343 as the terminating agent, yielding well-defined PEtOx with high labeling efficiency (over 91%). Fluorescence studies revealed that intramolecular FRET is most efficient for heterotelechelic PEtOx containing both pyrene and coumarin 343 fluorophores as chain ends, as expected. A strong dependence of the energy transfer on the chain length was found for these dual labeled polymers. The polymers were tested in both dilute organic (chloroform) and aqueous media revealing a higher FRET efficiency in water due to the enhanced emissive properties of pyrene. The application of dual labeled polymers as fluorescent probes for temperature sensing was demonstrated based on the lower critical solution temperature behavior of the PEtOx. Furthermore, these polymers could be successfully processed into fibers and thin films. Importantly, the fluorescence properties were retained in the solid state without decreasing the FRET efficiency, thus opening future possibilities for application of these materials in solar cells and/or sensors.

A novel luminescence resonance energy transfer (LRET) nanocircuit assay involving a donor and two acceptors in tandem was developed to study the dynamic interaction of skeletal muscle contraction proteins. The donor transmits energy relayed to the acceptors distinguishing myosin subfragment-1 (S1) lever arm orientations. The last acceptor allows the detection of S1's bound near or in between troponin complexes on the thin filament. Additionally, calcium related changes between troponin T and myosin were detected. Based on this data, the troponin complex situated every 7 actin monomers, hinders adjacently bound myosins to complete their power stroke; whereas myosins bound in between troponin complexes undergo complete power strokes.

Resonance energy transfer was employed to study the conformational changes of actomyosin during ATP hydrolysis. To calibrate the technique, the parameters for resonance energy transfer were defined. With conformational searching algorithms to predict probe orientation, the distances measured by resonance energy transfer are highly consistent with the atomic models, which verified the accuracy and feasibility of resonance energy transfer for structural studies of proteins and oligonucleotides. To study intramyosin distances, resonance energy transfer probes were attached to skeletal myosin's nucleotide site, subfragment-2, and regulatory light chain to examine nucleotide analog-induced structural transitions. The distances between the three positions were measured in the presence of different nucleotide analogs. No distance change was considered to be statistically significant. The measured distance between the regulatory light chain and nucleotide site was consistent with either the atomic model of skeletal myosin subfragment-1 or an average of the three models claimed for different ATP hydrolysis states, which suggested that the neck region was flexible in solution. To examine the participation of actin in the powerstroke process, resonance energy transfer between different sites on actin and myosin was measured in the presence of nucleotide analogs. The efficiencies of energy transfer between myosin catalytic domain and actin were consistent with the actoS1 docking model. However, the neck region was much closer to the actin filament than predicted by static atomic models. The efficiency of energy transfer between Cys 374 and the regulatory light chain was much greater in the presence of ADP-AlF4, ADP-BeFx, and ADP-vanadate than in the presence of ADP or no nucleotide. These data detect profound differences in the conformations of the weakly and strongly attached crossbridges which appear to result from a conformational selection that occurs during the weak binding of the myosin head to actin. The resonance energy transfer data exclude a number of versions of the swinging lever arm model, and indicate that actin participation is indispensable for conformational changes leading to force generation. The conformational selection during weak binding at the actomyosin interface may precock the myosin head for the ensuing powerstroke.

Intramolecular energy transfer is reviewed from several perspectives, such as the generally accepted mechanism and molecular structure dependence. Some unique molecules with bichromophores or trichromophores linked by rigid bridges were designed to serve as models for studying the intramolecular triplet-triplet energy transfer. Bichromophoric molecules containing an anthracene donor and phenanthrene or diphenylpolyene acceptors linked by linearly fused norbornane units were synthesized. Approaches to the analogous compounds with anthracene as the donor and benzophenone or p-terphenyl as acceptors are presented. Synthetic approaches to cis, exo-1, 4-dihydro-1, 4-methanotriphenylene, a precursor to the polynorbornyl-linked polychromophore, and trichromophoric compounds linked by adamantane spacers were explored.

abstract: The first chapter reviews three decades of artificial photosynthetic research conducted by the A. Moore, T. Moore, and D. Gust research group. Several carotenoid (Car) and tetrapyrrole containing molecules were synthesized and investigated for excitation energy transfer (EET), photoregulation, and photoprotective functions. These artificial photosynthetic compounds mimicked known processes and investigated proposed mechanisms in natural systems. This research leads to a greater understanding of photosynthesis and design concepts for organic based solar energy conversion devices. The second and third chapters analyze the triplet energy transfer in carotenoid containing dyads. Transient absorption, time-resolved FTIR and resonance Raman spectra revealed that in a 4-amide linked carotenophthalocyanine dyads the Car triplet state is shared across the larger conjugated system, which is similar to protein complexes in oxygenic photosynthetic organisms. In a carotenopurpurin dyad (CarPur) a methylene ester covalent bond prevents the purpurin (Pur) from influencing the Car triplet based on the transient absorption, time-resolved FTIR and resonance Raman spectra. Thus CarPur resembles the antenna proteins from anoxygenic photosynthetic bacteria. Additional examples of carotenoporphyrin dyads further demonstrates the need for orbital overlap for ultrafast triplet energy transfer and the formations of possible intramolecular charge transfer state. The fourth chapter studies a 4-amino phenyl carotenophthalocyanine and its model compounds using high temporal resolution transient absorption spectroscopy techniques. EET from the Car second excited (S2) state to the phthalocyanine (Pc) was determined to be 37% and a coupled hot ground state (S*)/Pc excited state spectrum was observed. Excitation of the tetrapyrrole portion of the dyad did not yield any kinetic differences, but there was an S* signal during the excited states of the dyad. This demonstrates the EET and photoregulating properties of this artificial photosynthetic compound are similar to those of natural photosynthesis. The last chapter covers the synthesis of silicon Pc (SiPc) dyes and the methods for attaching them to gold nanoparticles and flat gold surfaces. SiPc attached to patterned gold surfaces had unperturbed fluorescence, however the selectivity for the gold was low, so alternative materials are under investigation to improve the dye's selectivity for the gold surface. / Dissertation/Thesis / Ph.D. Chemistry 2014