The assemblage composition, biomass and dynamics of zooplankton and epibenthos were examined in a commercial prawn pond in southeast Queensland over two seasons. Physico-chemical characteristics of the pond water were measured concurrently. Numbers and biomass of zooplankton in the surface tows (140 micrometre mesh) varied from 8 ind. L-1 (44 micrograms L-1) to 112 ind. L-1 (324 micrograms L-1) in the first season, with peaks in biomass corresponding to peaks in numbers. In the second season the zooplankton numbers varied from 12 to 590 ind. L-1, but peaks in numbers did not correspond with peaks in biomass, which varied from 28 to 465 micrograms L-1. This was due to differences in the size of the dominant taxa across the season. Although this occurred in both seasons, the effect on biomass was more pronounced in the second season. In both seasons, immediately after the ponds were stocked with prawn postlarvae there was a rapid decline in zooplankton numbers, particularly of the dominant larger copepods. This was probably due to predation by the postlarvae. Subsequent peaks in zooplankton numbers were principally due to barnacle nauplii. The largest peaks in zooplankton numbers occurred before stocking in the first season, but the largest peaks were in the middle of the second season. While changes in abundance and biomass of the zooplankton assemblage were not correlated with physico-chemical characteristics in the first season, there were correlations between zooplankton numbers and temperature, dissolved oxygen, pH and secchi disk readings in the second season. No correlations were found with zooplankton biomass and physico-chemical characteristics in the second season. The correlations in the second season were mainly due to the high prevalence of barnacle nauplii through the middle part of the season, and may reflect suitable conditions for barnacle reproduction. Epibenthic faunal abundance in the beam trawls (1 mm mesh) peaked at 14 ind. m-2 and 7 ind. m-2 in the first and second seasons respectively and the biomasses at 0.8 g m-2 and 0.7 g m-2. Peaks in abundance of epibenthos did not correspond to peaks in biomass. This was due to large differences in the size of the taxa across the seasons. Sergestids (Acetes sibogae) and amphipods were the most abundant taxa in beam trawl samples. Amphipods were only abundant in the first season, with their numbers increasing towards the end of the grow out period. Acetes were abundant in both seasons, but were dominant in the second season. Correlations between physico-chemical parameters and epibenthos numbers were found to be strongly influenced by the dominant taxa in each season. In the first season, negative correlations were found between epibenthos abundance and pH and temperature. These relationships may reflect an effect on the growth of macroalgae in the pond, with which the amphipods were strongly associated, rather than a direct effect on the epibenthos. In the second season, a positive correlation existed between temperature and epibenthos abundance, however this was strongly influenced by the very high abundance of Acetes in the last sampling period. No correlations were found between epibenthic fauna biomass and physico-chemical parameters. Abundances of epibenthic fauna were not related to zooplankton densities indicating this source of food was not likely to be a limiting factor. Neither the pond water exchange regime nor moon phase could explain changes observed in abundances of zooplankton or epibenthos assemblages in the first season, however the sampling regime was not designed to specifically investigate these effects. In the second season water exchanges were sampled more rigorously. The density of zooplankton in the outlet water was from 2 to 59% of the density of zooplankton in the pond, and the zooplankton density of the inlet water was from 9 to 50% of the outlet water. The number of zooplankton recruited into the pond from the inlet water, after the prawns were stocked, was negligible and contributed little to changes observed in zooplankton assemblages. Reproduction of barnacles within the pond appeared to play the most important role in changes in the assemblage. Water exchange did, however, appear to play a greater role in the changes observed in epibenthic fauna assemblages. In the last season of sampling the feeding of the dominant epibenthic species, Acetes sibogae, was examined using a combination of gut content and stable isotope analysis. Acetes gained little nutrition directly from the pelleted feed, probably relying primarily on zooplankton as their direct food source. Other dietary items such as macroalgae also played a role in the nutrition of the Acetes. If Acetes numbers were high at the beginning of a season they may compete with the newly stocked prawns for the zooplankton resource. However, they will not compete with the prawns later in the season when the prawns are gaining most of their nutrition from the pelleted feed. Overall it appears that zooplankton are important to the nutrition of the prawns at the beginning of the season when the assemblage is usually dominated by copepods. Later in the season the assemblage is dominated by barnacle nauplii which are recruited from within the pond. The establishment of an abundant assemblage of suitable zooplankton species before stocking prawn postlarvae would appear to be beneficial, if not essential. The assemblage of epibenthic fauna changes throughout the season as new recruits are brought in from outside the pond. Epibenthic faunal assemblages in ponds from southeast Queensland are dominated by Acetes which are not likely to adversely affect the production of prawns unless they are particularly abundant early in the grow out season when the prawns would be utilising the same food resources as Acetes.

The West Florida Shelf (WFS) is one of the largest and most diversely-used continental shelf/slope systems in the world. The presence of paleoshorelines and scarped hardbottom outcrops (up to 4 m in relief) along the inner shelf (10-30 m depth) provide important habitat for a variety of infaunal, epifaunal, and fish assemblages that contribute to the productivity of the region. This dissertation will present a comprehensive overview of the geological, physical, and chemical settings of the inner West Florida Shelf, with particular focus on biological and ecological community dynamics of epibenthic macroinvertebrates, algae, and fish assemblages. Baseline and comparative data sets are presented in the form of historic and modern species lists, with focus on seasonal and intra-annual variations. Quantitative effects of disturbances (e.g., hurricanes, thermal stresses, and red tides) and subsequent recovery rates are discussed as they periodically perturb inner-shelf systems and can have significant effects on community structure. Benefits of and recommendations for using artificial reefs as restoration tools along the inner shelf, as mitigation for future disturbances, are presented.