Theropoda was one of the most successful dinosaurian clades during the Mesozoic and has remained a dominant component of faunas throughout the Cenozoic, with nearly 10,000 extant representatives. The discovery of Archaeopteryx provides evidence that avian theropods evolved at least 155 million years ago and that more than half of the tenure of avian theropods on Earth was during the Mesozoic. Considering the major changes in niche occupation for theropods resulting from the evolution of arboreal and flight capabilities, we have analyzed forelimb and hindlimb proportions among nonmaniraptoriform theropods, nonavian maniraptoriforms, and basal avialans using reduced major axis regressions, principal components analysis, canonical variates analysis, and discriminant function analysis. Our study is the first analysis on theropod limb proportions to apply phylogenetic independent contrasts and size corrections to the data to ensure that all the data are statistically independent and amenable to statistical analyses. The three ordination analyses we performed did not show any significant groupings or deviations between nonavian theropods and Mesozoic avian forms when including all limb elements. However, the bivariate regression analyses did show some significant trends between individual elements that suggested evolutionary trends of increased forelimb length relative to hindlimb length from nonmaniraptoriform theropods to nonavian maniraptoriforms to basal avialans. The increase in disparity and divergence away from the nonavian theropod body plan is well documented within Cenozoic forms. The lack of significant groupings among Mesozoic forms when examining the entire theropod body plan concurrently suggests that nonavian theropods and avian theropods did not substantially diverge in limb proportions until the Cenozoic. J. Morphol. 276:152-166, 2015.

Ephemeroptera (mayflies) is a monophyletic group of semi-aquatic pterygote insects, comprising 3083 species, 376 genera, and 37 described families and are present on all continents, excluding Antarctica, being associated with freshwater and brackish water habitats. The order is unique among pterygote insects in possessing functional wings at the penultimate molt (subimago stage), prior to the full development of genitalia; in all other insects the presence of functional wings occurs only after the final molt. The purpose of this dissertation is to use molecular and morphological data, in order to investigate the position of the order Ephemeroptera among other insect orders, the higher-level relationships among the major lineages of mayflies, and a detailed analysis of the family Ephemerellidae. Ephemeroptera has been considered by many to be sister to Odonata + Neoptera although alternate hypotheses have been suggested. Data from three molecular loci ambiguously resolve basal pterygote relationships, however, total evidence analysis (combined molecular and morphological data) strongly supports the position of mayflies as sister to all other extant pterygotes. These results and methodologies were recently criticized, and, therefore, the response to the author is included following the manuscript. The phylogenetic relationships among mayfly families is debatable and in some groups unknown. Prior studies have produced phylogenies based on morphological characters mixed with intuition. The first molecular phylogeny for the Order Ephemeroptera is presented. The analyses include 31 of the 37 families, representing ~24% of the genera. The suborders Furcatergalia and Carapacea are supported as monophyletic while Setisura and Pisciforma are not supported as monophyletic. The evolution of the wings, mandibular tusks, burrowing lifestyle, and fishlike body are investigated. Topological sensitivity analysis is used as a tool to examine patterns concerning the stability of relationships across a parameter landscape, providing additional information that may not have been acquired otherwise. The Pannote family Ephemerellidae is comprised of 16 genera and over 300 species and is distinguished from other mayfly families by the absence of the second pair of abdominal gills. The position of Ephemerellidae relative to other closely related pannote mayflies is unclear as are the relationships of the genera within the family. The combined molecular and morphological analyses resulted in a monophyletic Ephemerellidae as sister to the other ephemerelloid families. The subfamily Ephemerellidae was supported as monophyletic, while Timpanoginae had conflicting results.