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The South African demersal longline experiment is assessed with emphasis on the target species, kingklip Genypterus capensis. The hypothesis that kingklip on the South African coast comprise a unit stock is tested. Recommendations for the management of the fishery are made. Longlining was found to be commercially viable. Techniques have been developed to target on either kingklip or the Cape hakes, Herluccius capensis and H. paradoxus. Longline fishermen exploit the kingklip spawner stock from August to No v ember by taking advantage of prespawning aggregations on the South-East Coast . Effort switches to the West Coast in late summer and early winter where kingklip are less abundant and a larger proportion of hake is caught. Catch rates of kingklip on the South Coast have declined sharply and the resource there has been exploited at a rate greater than that required to retain 50% of the unexploited biomass . There is a 17,6% probability that the spawner biomass on the South Coast has already been depleted below its pristine level. On the West Coast the catch rates of kingklip are lower than on the South Coast and have not changed significantly, although within the 95% confidence limits there is a possibility that the resource there has also been depleted below 50% of its pristine level. Genypterus capensis on the South African coast comprise a unit stock. Comparison of kingklip morphology using multivariate and discriminant function analysis and of otolith morphology using univariate statistics shows that there are no significant differences between the fish on the West and South Coasts. They are a slow growing species and were aged up to 25 years. Kingklip on the West Coast are smaller and have a lower L~ than those on the South Coast, but this is not a characteristic of discrete stocks. Kingklip on the South Coast mature earlier than those on the West Coast and aggregate to spawn on the South - East Coast in spring. There is no obvious spawning period on the West Coast. It is hypothesized that kingklip spawning on the South-East Coast is in response to favourable environmental conditions that enhances the survival of their eggs and larvae. It is recommended that demersal longlining be established as a permanent kingklip-directed fishery but that effort should not be allowed to increase. The West and South Coasts should be managed .separately. A TAC of 5 OOOt for kingklip should be introduced for 1989 of which 2 OOOt should be allocated to the West Coast and 3 OOOt to the South Coast . A closed season for kingklip from 1 August to 30 September on the South-East Coast is recommended. Hake-directed longlining should not be allowed as its effect on the hake spawner stocks are unknown and could be a potential threat to the stability of the demersal trawl fishery.

M.Sc. (Zoology) / Please refer to full text to view abstract

Ph.D. (Zoology) / The contribution of genetics in animal husbandry and agriculture has long been recognised. The application of genetics in fish culture has not yet become established because both overseas and locally the focus was until recently still on culture techniques. In South Africa the only genetic data on the rainbow trout (Parasalmo mykiss) stock is limited to one electrophoretic survey (Op't Hoff et al. 1982). During 1982 to 1985 a survey was done of trout angling management in provincial trout angling waters by the Transvaal Division of Nature Conservation. The goal was to find and eliminate inhibiting factors affecting trout angling in order to provide a better service. Angling results were improved and management of trout waters brought into line with its own potential. The percentage returns of trout caught however, seemed to reach a level that could only be breached by genetically improving the trout strains used for stocking. The inherent inability of inbred domesticated P. mykiss strains to grow and survive in nature has been shown to affect its survival when stocked in streams and dams for angling purposes (Kincaid 1981; Ersbak & Haase 1983).

The South African hake resource faces divergent fishing pressures and management issues. Although the resource consists of two species, management was simplified because the resource was only subject to trawl effort and because of the similarity in population parameters, single species assessment models could be adopted. The impact of trawling on the stock is considered to be well understood and the resource has shown recovery since exclusion of foreign vessels. The 1990s were punctuated by major political change and the need for transformation has resulted in an expansion of the number of fishing rights holders. Longlining has been reintroduced and there is no clear understanding of how the combined fishing pressures will affect the population structure of either Merluccius capensis or M. paradoxus. Information is vital to successful management. Fisheries are complex and intricate, and at times appear impossible to control or monitor. An integrated information system provides easily understood graphical explanations of complex issues. This thesis assessed the dynamics of the trawl and longline fisheries between 1994 and 1999 using a geographical information system (GIS). The accessability of a GIS incorporates the needs of scientists, managers and fishing communities. The simple GIS developed in this study revealed shifts in effort, facilitated the calculation of spatially precise catches and biomasses and highlighted the inadequacy of current sampling coverage. Trawlers were shown to fish the same areas consistently during the years investigated, with highest fishing intensity and average CPUE achieved at depths between 300 and 500m. Analysis of the longline sector revealed several similarities to the trawl sector, fishing intensity was highest between 301 and 500m, suggesting that both sectors face a "friction of distance" dilemma. The distribution and abundance of hake, in particular the exploitable proportion of the population, was determined by a combination of depth and substrate type. The selectivity patterns of trawlers and longliners were briefly investigated with the results illustrating that gear selectivity of the M. capensis stock was depth dependent. The deeper fishing occurred, the larger the length-at-selection. As a result, the M. capensis parental stock faces unprecedented fishing pressure. In the absence of reliable species-specific catch data, logistic and linear regression models were developed to split the hake catch into its respective species components. Large discrepancies between the predicted M. capensis catch for the two models were noted. Regression estimates constructed at a finer spatial scale may provide a better fit than the current depth logistic employed by Marine and Coastal Management. A first attempt at assessing the M. capensis resource on the West Coast using an age-structured production model was presented. It was found that a lengthy and accurate M. capensis catch series is required before it is possible to successfully model the dynamics of the stock. It is necessary to incorporate finer spatial detail in the collation of catch data and collection of sampling data. It would be unadvisable to assume that the stock is stable or recovering. The implications of a size/sex relationship must be investigated and properly appraised.

Yellowfin tuna Thunnus albacares is a commercially and economically important fisheries species, which comprises the second largest component of South Africa’s catch of tuna and tuna-like species. Catches of the species off South Africa are treated as two discrete stocks by the two tuna Regional Fisheries Management Organisations (tRFMOs) under whose jurisdictions they fall. Individuals caught off the Western Cape, west of the boundary between the tRFMOs at 20°E, are included in assessment and management of the Atlantic Ocean yellowfin tuna stock by the International Commission for the Conservation of Atlantic Tunas (ICCAT), and those caught east of this boundary are assessed and managed as part of the Indian Ocean stock by the Indian Ocean Tuna Commission (IOTC). The boundary between these stocks is based on the confluence of the two oceans in this region and does not incorporate the population structure of species. For sustainable exploitation of fisheries resources, it is important that the definition of management stocks reflects species’ biological population structure; the fine-scale stock structure of yellowfin tuna off South Africa is therefore a research priority which this study aimed to address by means of population genomics analyses. Yellowfin tuna exhibit shallow genetic differentiation over wide geographic areas, and as such traditional population genetic approaches have limited power in resolving fishery significant population structure in the species. Herein, a population genomic approach was employed, specifically, genome-wide analysis of single nucleotide polymorphisms (SNPs) discovered using a next-generation DNA sequencing approach, to confer (i) increased statistical power to detect neutral structuring reflecting population connectivity patterns and (ii) signatures of local adaptation. The mitochondrial Control Region (mtDNA CR) was also sequenced to compare the resolving power of different approaches and to permit coalescent based analyses of the species evolutionary history in the region. Neutral SNP loci revealed significant structure within the dataset (Fst=0.0043; P<0.0001); partitioning of this differentiation within the dataset indicated significant differentiation between yellowfin tuna from the Western Cape and the Gulf of Guinea in the eastern Atlantic Ocean, with no significant differentiation between individuals from the Western Cape and Western Indian Ocean regions. This indicates two population units wherein there is a separation of the Gulf of Guinea from the remaining samples (Indian Ocean including Western Cape) that are largely derived from a single genetic population. This pattern was also supported by assignment tests. Positive outlier SNPs, exhibiting signatures of diversifying selection, suggest that individuals from these regions may be locally adapted, as well as demographically isolated. The mtDNA CR did not reveal any significant genetic structure among samples (Fst=0.0030; P=0.309), demonstrating the increased resolving power provided by population genomics approaches, but revealed signatures of historical demographic fluctuations associated with glacial cycles. Based on the findings of this study, it is suggested that yellowfin tuna caught off the Western Cape of South Africa are migrants from the Indian Ocean population, exhibiting significant genetic differentiation from the Atlantic Ocean Gulf of Guinea individuals, and should thus be included in the assessment and management of the Indian Ocean stock. It is therefore recommended that the boundary between the Atlantic and Indian Ocean yellowfin tuna stocks, under the mandates of ICCAT and the IOTC respectively, should be shifted to approximately 13.35°E to include all individuals caught in South African waters in the Indian Ocean stock.

Erratic and highly variable catches in the South African chokka squid Loligo vulgaris reynaudii fishery, cause socio-economic hardship for the industry and uncertainty for resource managers. Catch forecasting can reduce this problem as it is believed that catch variability is strongly influenced by environmental factors. In this study, data were collected at varying temporal and spatial scales. Data for the hourly time-scale study were collected from 1996-1998, aboard commercial vessels, whilst for the longer time-scales, data were extracted for Kromme Bay (a single fishing area) from existing databases (1991-1998) that were comprised of compulsory catch returns and oceanographic data. The environment-catch relationship for chokka squid on the inshore spawning grounds was then investigated using multiple correlation and regression analysis, analysis of variance, contingency table analysis and cross-correlation statistical techniques. This simple, direct, 'black box' statistical approach was relatively successful in developing a predictive capability. On a short time-scale (hourly), the regression model accounted for 32% of the variability in catch, with turbidity the main determinant (13%). On a daily monthly time-scale, the best prediction model was on a monthly scale, accounting for 40% of the variability in catch. The principal determinant, bottom temperature anomaly (11 %), was found to lag one month forward. Seasonal and diel catch variations induced changes in the relative importance of turbidity, water temperature and wind direction on catches. A strong, positive relationship was found between easterly winds (which cause upwelling) and catch, particularly in summer. Catch rates, however, decreased with an increase in turbidity. The correlation between temperature and catch was generally negative, however, higher catches were associated with a temperature range of 13-18°C. Highest catch rates were associated with easterly winds, zero turbidity conditions and sea surface temperatures from 15.0-16.9°C. Selected case studies (in situ observations) suggested that upwelling and turbidity events act as environmental triggers for the initiation or termination of the spawning process, respectively. A holistic approach is required to improve predictive capability of chokka squid abundance. Although short-term predictability remains essential (i.e. hourly-scale), future research should concentrate on long-term prediction models (e.g., monthly time-scales) involving greater spatial variation, which are the most important for management.

Dissertation submitted in partial fulfillment of the requirements for the degree of Masters of Management in Finance and Investments (MMFI) in the Graduate School of Business Administration University of the Witwatersrand 2017. / The Western Cape Fishing industry has been a subject of discussion in numerous papers, in which the thrust has been to seek ways of sustaining the significantly fluctuating business. Common risk factors have been identified and strategies for managing the fishing business in turbulent periods have been proposed over the years. A closer examination of previous literature as well as empirical evidence indicate that the business has less to do to control or minimize the impact of most of its external factors, which include the Government imposed Total Allowable Catch (TAC) limit, the variability in natural marine populations, environmental factors and fuel price oscillations. In the interest of curbing the variability component which is borne by the internal factors, this study brings on board a quantitative dimension to the evaluation of the four commonly cited internal factors, namely; Earnings Per Share (EPS), Margin of Safety (MOS), Free Cash-Flow (FCF) and the Net-Worth (NW) on volatility of the fishing business. The performance of five large JSE-listed fishing firms: Brimstone, Oceana, Premier Fishing, Sea Harvest and Irvin & Johnson, is investigated with the view of modelling and forecasting their volatilities. Initially, the comparison of volatility forecasts from symmetric and asymmetric GARCH-family models is employed. The results of competing models are tested using cross-validation of mean error measures and the Superior Predictive Ability (SPA) and Model Confidence Set (MCS) tests. Later, a Vector Autoregressive (VAR) model is applied to assess the impact of the four commonly cited internal factors on volatility. The research analysis results reveal a generally high volatility of the Western Cape fishing sector stocks. When univariate GARCH models are applied, the asymmetric GARCH-family models (EGARCH and GJR), with fat tails, appear dominant in the sets of competing models for all stocks, which highlights evidence of the leverage effect in the sector. However, GARCH (1,1), outperformed its counterparts in modelling and forecasting Irvin & Johnson (AVI) and Oceana (OCE) stocks. In the VAR modelling process, the Granger-causality tests indicate limited causal-relationship between EPS, MOS, FCF and the company Net-worth with the companies’ volatility measures. The variance decomposition of the 10-year ahead forecast of volatility indicates that volatility lag, free cash flow and networth have the largest contribution on volatility in the long-run, followed by margin of safety. In view of the above observations, the research discusses recommendations to the Western Cape fishing business to improve business returns and sustainability. / MT2017

This study investigated the movement behaviour of three inshore South African sparids – blacktail (Diplodus sargus capensis), zebra (Diplodus cervinus hottentotus) and white musselcracker (Sparodon durbanensis), popular inshore fishery species caught in appreciable numbers along much of the South African coast. The first study component examined movements of juveniles in a rocky intertidal nursery area at Schoenmakerskop near Port Elizabeth. Juveniles in a single gully were tagged with Visible Implant Elastomer (VIE) and resighted at the study site on snorkelling gear over a seven-month period. Tagged zebra and musselcracker displayed limited movement between potential low tide refuges, being observed repeatedly in the same gully over the full duration of the study. However, blacktail displayed greater movements and were seen infrequently in the later period of the study, probably having undergone an ontogenetic habitat shift to subtidal areas. There was evidence that blacktail maintain use of their intertidal nursery over high tide, during which the other two species moved into shallower areas adjacent to their low tide refuge. The results of three national tagging programs were analysed to determine the movement patterns of adolescent and adult fishes. The coast-wide ORI-WWF National Voluntary Tagging Program and two dedicated research programs in marine protected areas (MPAs) at De Hoop MPA and Tsitsikamma National Park (TNP) recorded few large-scale movements of tagged adult blacktail, zebra and juvenile musselcracker. High spatial-resolution data from the TNP suggested movements were usually on scales far smaller than one km. Together with long periods at liberty for many recaptured individuals, this suggests these fishes are longterm residents of small home range areas. However, tagged musselcracker over 600 mm forklength (adults) were observed to make large-scale movements, including some in excess of 800 km from Eastern Cape to KwaZulu-Natal waters. Predominantly eastward movements of adults recaptured during the spawning season indicate seasonal spawning migrations that occur in different regions of the coast. These enable the use of prevailing oceanographic currents to disperse eggs and larvae to suitable rocky nursery habitat. The third component of this study made use of high-resolution data on the temporal and spatial distribution of catches by scientific angling in the TNP to examine the daily activity patterns of the study species in relation to diel and tidal cycles, and habitat use. Blacktail capture probability was correlated with the diurnal light cycle, with peaks close to twilight suggesting elevated crepuscular foraging activity. Catches of blacktail, zebra and small musselcracker were correlated with the tidal cycle, foraging peaking over high tide periods. All three species used shallow inshore habitats extensively for foraging, blacktail showing a preference for sandy areas, while zebra and small musselcracker preferred shallow reef. Capture probability of larger musselcracker, however, was unrelated to habitat, possibly evidence of increasing area and habitat use with an ontogenetic change in diet. The lifetime movement patterns of these three species are discussed in relation to conservation measures and their management in South African fisheries. Restricted movement throughout post-settlement life for blacktail and zebra, and during the juvenile phase for musselcracker, makes local populations vulnerable to overexploitation. At present, MPAs probably play an important role in protecting local blacktail and zebra populations from overexploitation, and limited post-settlement movements mean the degree of larval dispersal between protected and adjacent areas will likely determine the effectiveness of MPAs in enhancing fisheries for these species. By contrast, MPAs likely provide recruits to fisheries for musselcracker during ontogenetic movements and dispersal from MPAs during spawning migrations. MPAs only offer partial protection to adult musselcracker populations in the spawning season, but this could nevertheless be significant under high levels of exploitation.

Thesis (MBA)--Stellenbosch University, 1998. / ENGLISH ABASTRACT: The techniques for animal reproduction and husbandry for both abalone and sea turtle farming have been well established and researched over the last decade. Although market related data seems to be scarce, marketing analysis reviewed and conducted as part of this study suggests that extensive markets exist for live cocktail size abalone and sea turtle products, especially in the East Asian countries. A decline in natural resources and increased demand resulted in a fast expanding niche market for these products. This study shows that development of an abalone farm in South Africa for the production of cocktail size (±80 mm; ±100 g) is a highly profitable venture. Economic feasibility analysis indicated that the development of an abalone farm capable of producing 150 tons annually should result in a rate of return in excess of 50% over a seven-year investment period. On the other hand, sea turtle farming is a less profitable investment with Green turtle farming yielding a return of approximately 25% and Hawksbill farming yielding a return closer to 30% over a seven-year investment period. According to the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES), all sea turtle species have been listed as endangered or threatened. Currently all countries who are members of CITES are prohibited from international trade in sea turtles or sea turtle products. Prospective entrepreneurs wishing to establish a sea turtle farming venture have to adhere to stringent regulatory and control measures, a major obstacle in the development of a profitable enterprise. Both abalone and sea turtle farming have long payback periods, due to the slow growth-rates of the investigated species. In order to produce animals in a time frame that is economically viable, artificially formulated feeds have to be used. The usage of artificially formulated feeds proved to be a major expense, especially in the case of sea turtle farming. / AFRIKAANSE OPSOMMING: Die tegnieke vir die reproduksie, onderhoud en groei van beide perlemoen en seeskilpad akwakultuur boerderye is goed gevestig en nagevors oor die afgelope dekade. Alhoewel mark verwante data skaars is, dui bemarking analises aan dat 'n enorme mark bestaan vir lewendige "cocktail" grootte perlemoen en seeskilpadprodukte, veral in Oos Asie. 'n Afname in natuurlike hulpbronne en 'n toename in aanvraag, het 'n vinnige "nis" mark vir die produkte tot gevolg gehad. Die ontwikkeling van 'n perlemoen boerdery vir die produksie van "cocktail" grootte (±80 mm; ±100 g) perlemoen kom voor as 'n hoogs winsgewende onderneming. 'n Ekonomiese winsgewindheidsanalise het getoon dat die ontwikkeling van 'n perlemoenplaas, met 'n produksie van sowat 150 ton perlemoen jaarliks, 'n opbrengs van oor die 50% oor 'n sewe jaar investeringsperiode teweeg sal bring. Seeskilpad boerdery, aan die ander kant, kom as 'n minder winsgewende belegging voor, waar Groen seeskilpad boerdery 'n opbrengs van ongeveer 25% en Hawksbill boerdery 'n opbrengs van min of meer 30% oor 'n sewe jaar beleggings periode toon. Volgens CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora) is alle seeskilpaaie gelys as bedreig. Alle lande wat huidiglik lede is van CITES, word van die reg voorbehou om internasionale handel te dryf in seeskilpaaie of seeskilpadprodulcte. Voorgenome entrepeneurs met die begeerte om 'n seeskilpadboerdery te begin, sal voor streng maatreels en beheer- maatstawwe te staan kom, wat 'n groot stuikelblok is in die ontwikkeling van 'n winsgewende seeskilpadplaas. Beide perlemoen- en seeskilpadboerderye het lang terugbetalingsperiodes, 'n waameming wat verduidelik kan word aan hand van die stadige groei-tempo's van die bestudeerde spesies. In orde om diere in 'n spesifieke tydsperiode te produseer wat ekonomies winsgewend is, moet daar van artifisieel geformuleerde voeding gebruik gemaak word. Die gebruik van geformuleerde voeding. is egter duur, veral in die geval van seeskilpadboerderye.