Historically studies have focused on either the terrestrial or aquatic environments independently. However, these systems are inherently linked through numerous pathways including organisms with complex life cycles. Both abiotic factors and predators of these organisms can influence connections by changing the number of prey moving across habitat boundaries and by changing the phenotype of prey. When the focal organisms are primary consumers, these effects may have important implications for ecosystem processes. My study investigated how terrestrial predators and abiotic factors affect the number and phenotype of herbivorous tadpole inputs into a tropical forest pond. I found that predators and abiotic factors altered survival and timing of hatching and these effects varied temporally. Thus, temporal changes in the relative importance of these threats from abiotic sources and terrestrial predators on prey with complex life cycles may potentially have implications for connections with and food web dynamics in adjacent ecosystems.

The global phenomenon of burgeoning coastal population growth has led to coastal watershed landscape transformation and ecosystem degradation, prompting policy-makers to set limits on freshwater withdrawals and labile nutrient loads. Important components of Florida’s economies lie in the state’s expansive coastal zone; the organisms driving the billion-dollar recreational fishing industry are rooted in coastal habitats, while the agriculture and real-estate industries sprawl throughout numerous coastal watersheds. This study aimed to identify the connections between anthropogenic land use and essential juvenile fish nursery habitats within the coastal zone, which is the first critical step for sustaining the ecology and related economies of the region. The need for this study arises from the fact that these economies are interconnected through nitrogen, and therefore nitrogen management can influence their prosperity or collapse. Juvenile fish nursery habitats are located in waters that receive nitrogen from adjacent landscapes. Runoff delivers nitrogen derived from human nitrogen use and processing within the watersheds to the juvenile fish nursery habitats. Ecosystem managers must understand that although copious amounts of nitrogen applied to land may ultimately support nursery habitat foodwebs, overwhelming nitrogen loads may also create algal blooms that decay and cause lethal hypoxic events leading to ecosystem degradation. This study aims to pinpoint the specific nitrogen sources that support primary production and ultimately fish production in watersheds dominated by agricultural landscapes and residential neighborhoods. Stable isotopes are versatile tools used to identify these connections. The nitrogen and carbon compounds that make up the moieties of an ecosystem inherently carry information on major nitrogen sources, trophic structure as well as the crucial information concerning dominant nitrogen removal and transformative processes that occur within sediments. Specifically in this study, the stable isotopes of carbon and nitrogen of dissolved inorganic nitrogen, primary producers, and fish were used to identify 1) the connections between urban and agricultural landscapes and the nutrients that percolate through the foodweb, 2) the primary producers that support fish biomass, 3) the origins of sedimentary organic matter that can provide new nitrogen via recycling, and 4) the heterogeneous function of fish nursery habitats in polluted systems. This study was conducted during the region’s wet and dry seasons and in over thirty watersheds that differ from each other in terms of size and anthropogenic influence. In agricultural watersheds, nitrogen derived from row crops and tree crops ultimately supported fish production during the wet season. Convective afternoon thunderstorms coupled with runoff delivered nitrogen from the landscape to receiving waters. These nutrients supported phytoplankton which deposited into the sediments and supported benthic foodwebs. During the dry season, nitrogen derived from row crops and nitrogen transformation in the sediments ultimately supported fish production. In this case, irrigation water used for agriculture delivered nitrogen from lands covered with row crops to the nursery habitats in receiving waters. The dry season was characterized by the nitrogen transformation process known as dissimilatory nitrogen reduction to ammonium (DNRA), where biologically available nitrate is converted to biologically available ammonium. Phytoplankton deposits, most likely delivered during the wet season, were recycled through the slow burning DNRA processes, which provided nitrogen for the benthic microalgae that dominated in the dry season. These organisms in turn supported benthic communities which ultimately supported dry season fish production.  In small urban watersheds, nitrogen derived from septic tanks, lawn irrigation, leaky sewage pipes, and atmospheric deposition ultimately supported fish production via phytoplankton, but unlike the nitrogen sources in agricultural watersheds, these sources (with the exception of atmospheric deposition) were seasonally consistent because a mechanisms to deliver nitrogen derived from septic tanks, lawn fertilizer, and leaky sewage pipes were, at least to some extent, available during both seasons. In polluted, tidal, fish-nursery habitats, the specific mechanism that allowed nursery habitats to decrease the ratio of mortality over growth rates of juvenile fish was not consistent among systems. These mechanisms were likely dependent on physical-chemical parameters and stream geomorphology. If the geomorphology or physical-chemical characteristics of nursery habitats are not adequate to set up an efficient nitrogen transfer process to fish, these habitats become more of a haven from predators rather than a source of food for fish.  This study has several implications for management. Managers must first recognize that microalgae are dominant supporters of tidal nursery foodwebs. Managers must define the relationship between nitrogen loads and fish abundance. If this relationship is unknown, the results of increasing nitrogen loads on fish production will remain uncertain; foodwebs in nursery habitats may collapse due to eutrophication, or fish abundance may increase due to increases in food supply. Connectivity factors derived from stable isotope mechanistic mass-balance models can be used as measurable targets for groups of watersheds. The use of wetlands as nitrogen remediation tools may not be effective at removing nitrogen; nitrogen transformation processes such as DNRA likely outweigh removal processes in wetland soils.

Le vent joue un rôle clé dans la structure et le fonctionnement des lacs. Le brassage de la colonne d’eau est notamment impliqué dans la compétition entre les différentes espèces de phytoplancton dont les stratégies de positionnement vertical varient largement entre groupes. Par exemple, les cyanobactéries sont globalement favorisées par des conditions de brassage faible grâce à des mécanismes physiologiques de flottaison leur permettant de se maintenir à une profondeur désirée, alors que les diatomées et les algues vertes qui n’ont pas de système de flottaison dépendent d’un brassage important pour être suspendues dans la zone euphotique. Dans les lacs peu profonds, le brassage généré par le vent est généralement suffisant pour entrainer la resuspension des sédiments. Ceci a pour conséquence directe une augmentation de la turbidité qui peut directement impacter la croissance et la productivité algale. La seconde conséquence est la libération de phosphore précédemment stocké dans les sédiments. La pollution et l’usage d’engrais ont provoqué un important import de phosphore dans les lacs qui sont pour la plupart dans un état d’eutrophisation. Dans un premier temps, cette thèse a eu pour objectif de modéliser la compétition entre une cyanobactérie et une algue verte dans une colonne d’eau de lac peu profond prenant en compte la possibilité de resuspension des sédiments et de phosphore. Différents niveaux de brassage ont été testés : de quasi-stagnant à tempête. Des centaines de simulation ont été réalisées dans différentes conditions de brassage, d’eutrophisation (de oligo- à hypereutrophe) et de réchauffement climatique (actuel et +2°C) permettant d’établir des domaines de conditions de dominance d’une espèce ou de l’autre. Dans une seconde partie, la thèse a eu pour objectif d’explorer les impacts potentiels du brassage sur l’ensemble du réseau trophique pélagique. En effet, la grande majorité des études portant sur le brassage sont des études in situ focalisées sur le phytoplancton. Dans le cas présent, nous avons utilisé des mésocosmes de 15m3 équipés de batteurs à vagues dont les amplitudes, fréquences et longueurs d’ondes sont modifiables. Une première expérience en 2012 a eu pour objet de suivre durant 9 semaines la dynamique des variables physico-chimiques standards et des communautés de phytoplancton, zooplancton, bactéries et virus dans deux modalités de brassage : brassage superficiel et brassage de l’ensemble de la colonne d’eau avec resuspension des sédiments. L’année suivante, la même expérience a été conduite mais cette fois-ci couplée à un traitement de réchauffement appliqué grâce à des bâches de polyéthylène transparentes posées sur les mésocosmes. Ces deux expériences montrent un effet important du brassage sur le phytoplancton avec une augmentation du contenu en chlorophyll a et une augmentation de la productivité. Au niveau du zooplancton, la réponse dépend du sous-groupe. Dans nos expériences, uniquement les copépodes ont répondu négativement au régime de brassage avec un potentiel effet cascade sur la population de rotifers. L’expérience de 2012 suggère également un renforcement de l’activité de lyse bactérienne par les virus dans des conditions de brassage important. En 2013, aucun effet du réchauffement de l’eau de 1°C n’a été observé sur les variables mesurées. Des analyses supplémentaires en cours devraient permettre de compléter les informations obtenues et de vérifier l’absence d’effet du réchauffement. / The wind plays a key role in the structure and functioning of lakes. Water column mixing is involved in the competition between different species of phytoplankton with different vertical positioning strategies. For example, buoyant cyanobacteria are generally favored by low mixing conditions, while sinking diatoms and green algae depend on mixing to be suspended in the photic zone. In addition, in shallow lakes, wind-induced mixing is usually sufficient to cause sediment resuspension. This leads to an increase in turbidity which can directly impact the algal growth and productivity. Resuspension can also induce the release of phosphorus previously stored in sediments. This internal loading via resuspension can boost algal production and growth. The first goal of this thesis was to model the competition between the buoyant cyanobacterium Microcystis aeruginosa and a sinking green algae under different mixing conditions: from quasi-stagnant to storm-like events. Hundreds of simulations were carried out in different conditions of mixing, phosphorus concentration and water temperatures in order to establish the conditions necessary for the dominance of one species on the other. In the second part of this thesis, we explored the potential impacts of mixing on the pelagic food web. The vast majority of previous studies on mixing in shallow lakes are in situ studies focused on phytoplankton. In the summer 2012, we used 15m3 mesocosms equipped with wave-makers and followed during nine weeks the dynamics of physical and chemical variables and the dynamic of phytoplankton, zooplankton, bacteria and viruses under two mixing conditions: whole column mixing with sediment resuspension and superficial mixing without resuspension. The following year, the same experiment was conducted but this time crossed with a warming treatment. Both experiments gave similar results in regards to mixing. We observed a significant effect of mixing on phytoplankton with an increase in chlorophyll content and an increase in productivity. The response of zooplankton to mixing depended on the subgroup. In our experiments, only copepods responded negatively to mixing with a potential cascade effect on the rotifer population while bosminas remained unaffected throughout the experiments. The 2012 experience also suggests an increase in bacterial lysis activity by virus in mixed enclosures. In 2013, no effect of water warming (+1°C) was observed on the measured variables, however, additional analysis are still underway to confirm or infirm these results.