Since 2000, there has been a marked decline in the number of harbour seals in some regions around Britain; one possible contributing cause is competition for prey with sympatric grey seals. To explore one important aspect of this interaction, in this thesis the diet of harbour seals is estimated using analysis of hard prey remains recovered from faeces and compared with equivalent results for grey seals. To estimate coefficients to account for partial and complete digestion of hard prey remains, 100 whole prey feeding trials were conducted with six harbour seals and 18 prey species. Differences were found among prey species and between harbour and grey seals highlighting the importance of applying predator- and prey-specific digestion correction factors when reconstructing diet. In a comprehensive exploration of the diet of harbour seals around Britain, sandeel and flatfish dominated in the North Sea and large gadoids dominated on the Scottish west coast with seasonal pulses of pelagic prey. Variation in diet was linked to regional and seasonal differences in prey distribution and abundance. Sex-specific variation in harbour seal diet was examined in four regions. The main difference detected was in The Wash, where female diet quality was significantly higher than males in winter, which appeared to be driven by greater consumption of pelagic prey by female seals associated with seasonal energetic requirements of their annual life cycle. Comparison of the diet of harbour and grey seals revealed regional differences in diet composition, diversity and quality between the two species. However, there was no consistent pattern in this variation in relation to regional variation in harbour and grey seals population trajectories and no clear evidence for interspecific competition for prey. Future work should focus on an integrated investigation of prey abundance and distribution, and seal diet and foraging behaviour/distribution.

This thesis provides insights into the transport and fate of contaminants of concern (polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs) and mercury (Hg)), as well as results on the impacts of these compounds on marine mammal health. Atmospheric transport is known to be a significant pathway for the delivery of contaminants to remote food webs. Air and rain samples were collected from one remote site on the west coast of Vancouver Island, British Columbia (BC), Canada, and from one near-urban site in the Strait of Georgia, BC. While global atmospheric dispersion was observed for the legacy PCBs, 40% of PBDEs detected in BC air appeared to be originating from trans-Pacific transport. It was estimated that 3kg of PCBs and 17kg of PBDEs were deposited every year in the Strait of Georgia. Once deposited, PCBs, PBDEs and Hg biomagnify up the food chain. Harbour seals are non-migratory and can be used to provide signals of local contaminant sources. They have been extensively used as indicators of PCB and PBDE food web contamination in the BC coastal environment. The collection of over 200 harbour seal fur samples from various locations around Vancouver Island, BC and Puget Sound, WA, USA helped us pinpoint three sites where Hg levels were significantly higher than our reference site, Bella Bella (Queen Charlotte Strait, Port Renfrew and central Puget Sound). A combination of anthropogenic sources and marine food web processes appeared to influence the delivery of methylmercury (MeHg) to the top of this coastal marine food chain. Our results also suggested that these Hg levels (1.6-46.9 µg/g) could be a concern for the health of these harbour seals. Genomic techniques were used to generate insights into the implications of contaminant exposure on the health of marine mammals inhabiting industrialized regions (harbour seals from the Northeastern Pacific and Northwestern Atlantic) and remote, supposedly pristine, environment (Arctic beluga whales). In harbour seal blubber, there were positive correlations between the mRNA levels of several genes, including estrogen receptor alpha (Esr1), thyroid hormone receptor alpha (Thra), and glucocorticoid receptor (Nr3c1), and PCB levels. In beluga blubber, aryl hydrocarbon receptor (Ahr) and cytochrome P450 (Cyp1a1) mRNA levels increased with PCBs, consistent with their role in toxicity.While PCB-related toxic responses were observed in both species, additional factors appeared to be affecting the expression of important genes in beluga. Our results suggested that a shift in beluga diet during periods of low sea ice extent, as evidenced by changes in δ13C isotope ratios, had a significant impact on mRNA levels coding for genes involved in growth, metabolism and development. The use of a dual study design to evaluate the long range versus local sources of contaminants highlighted the importance of trans-Pacific transport in the delivery of PBDEs to coastal BC and the occurrence of local Hg sources in this marine environment. However, consistent with previous studies, our results suggested that PCBs remain the top contaminant of concern for marine mammal health. We also raised questions about the potential exacerbation of toxic risks due to PCBs as a consequence of climate changes currently underway in the Arctic. / Graduate / 0768 / 0383 / marie.t.noel@gmail.com

La plasticité comportementale et les interactions entre organismes sont connues pour avoir une influence sur l’utilisation de l’espace, notamment la sélection de l’habitat de chasse. Dans l’Atlantique Nord-Est, les phoques gris et veaux marins vivent en sympatrie. Ces deux espèces sont réparties dans différentes colonies où les interactions entre organismes (liées à la taille de la colonie et à la présence simultanée ou non des deux espèces) ainsi que la disponibilité de l’habitat (et donc des proies) varient localement. L’objectif de cette thèse était d’étudier l’utilisation spatiale et la sélection d’habitat de chasse à l’échelle locale de ces deux espèces dans des situations contrastées de dynamique de colonies. Pour cela, plusieurs individus de différentes colonies situées en Irlande, en Écosse et en France ont été équipés de balises GPS/GSM. Les données récoltées ont permis de caractériser leurs trajets en mer ainsi que d’identifier les zones de chasse permettant par la suite la sélection d’habitat. Contrairement aux veaux marins, qui ont réalisé des déplacements restreints aux alentours des colonies, la plupart des phoques gris se sont déplacés entre différentes colonies. Ainsi, l’étude de la sélection d’habitat à l’échelle individuelle pour les individus se déplaçant entre différentes colonies a mis en évidence l’influence de la plasticité comportementale et suggéré celle de la personnalité de l’animal. A l’échelle de la colonie, chez les deux espèces, les résultats ont mis en évidence l’influence de la disponibilité de l’habitat (et indirectement de la disponibilité des proies) ainsi que des interactions intra-spécifiques (liée à l’effet de densité dépendance) sur l’utilisation spatiale et la sélection de l’habitat de chasse. Cependant, la sélection de l’habitat de chasse était principalement liée à la distance au reposoir et la bathymétrie. Ces deux paramètres sont liés aux caractères de chasseur à place centrale et benthique des phoques. Cette étude a également mis en évidence, pour les sites où les deux espèces étaient présentes, une certaine ségrégation spatiale et des différences de sélection d’habitat entre les deux espèces. / The behavioural plasticity and the interactions between organisms are known to influence foraging habitat selection and spatial usage. In the Northeast Atlantic, greyand harbour seals live in sympatry. These two species are spread into different colonies where interactions between organisms (linked to the colony size et and the presence of one or both species) and habitat availability (linked to the prey distribution) vary locally. The objective of this PhD was to study the spatial usage and foraging habitat selection of these two species at the local scale, in contrasted situations of population dynamics. Several individuals were tagged with GPS/GSM tags in different colonies located in Ireland, Scotland and France. Telemetry data was used to characterize the seals’ trips at sea and to identify their foraging areas in order to model foraging habitat selection. While harbour seals only performed trips restricted around their haulout sites, grey seals moved between colonies. Studying habitat selection at the individual scale, for individuals moving between colonies, highlighted the influence of behavioural plasticity and suggested the influence of individual personality. At the colony scale, for both species, results highlighted the influence of habitat availability (indirectly linked to prey availability) and intra-specific interactions (linked to density dependence effects) on spatial usage and foraging habitat selection. However, the foraging habitat selection was mainly explained by the distance from the last haulout and the bathymetry. These two parameters are linked to the central place forager and benthic feeder characteristics of the seals. Furthermore, this study also highlighted, for study sites where both species occur, a spatial segregation and differences in foraging habitat selection between grey and harbourseals.

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