Freshwater is a finite resource that is rapidly becoming more scrutinized in agricultural consumption. Specialty crop producers, especially ornamental crop producers, must continually improve production sustainability, with regards to water resource management, in order to continue to stay economically viable. Soilless substrates were initially developed to have increased porosity and relatively low water holding capacity to ensure container crops would not remain overhydrated after irrigations or rain events. As a result, substrates were selected that are now considered to be in efficient in regards to water resource management. Therefore, to provide growers with additional means to improve production sustainability, soilless substrate hydrology needs be innovated to provide increased water availability while continuing to provide ample air filled porosity to ensure productive and efficient water interactions. Historically, soilless substrates have been characterized using "static" physical properties (i.e. maximum water holding capacity and minimum air-filled porosity). The research herein involves integrating dynamic soilless substrate hydraulic properties to understand how substrate hydrology can be manipulated to design sustainable substrates. This task involved adapting new technologies to analyze hydrological properties of peat and pine bark substrates by employing evaporative moisture characteristic measurements, which were originally designed for mineral soils, for soilless substrate analyses. Utilizing these evaporative measurements provide more accurate measures of substrate water potentials between -10 and -800 hPa than traditional pressure plate measurements. Soilless substrates were engineered, utilizing only three common substrate components [stabilized pine bark (Pinus taedea L.), Sphagnum peatmoss, and coconut coir fiber], via particle fractionation and fibrous additions. The engineering process yielded substrates with increased unsaturated hydraulic conductivity, pore connectivity, and more uniform pore size distributions. These substrates were tested in a greenhouse with irrigation systems designed to hold substrates at (-100 to -300 hPa) or approaching (-50 to -100 hPa) water potentials associated with drought stress. Substrate-water dynamics were monitored, as were plant morphology and drought stress indicators. It was determined that increased substrate unsaturated hydraulic conductivity within the production water potentials, allowed for increased crop growth, reduction in drought stress indicators, while producing marketable plants. Furthermore, individual plants were produced using as low as 5.3 L per plant. Increased production range substrate hydraulic conductivity was able to maintain necessary levels of air-filled porosity due to reduced irrigation volumes, while providing water for plants when needed. The substrates were able to conduct water from throughout the container volume to the plant roots for uptake when roots reduced substrate water potential. Furthermore, increased substrate hydraulic conductivity allowed plants within the substrate to continue absorbing water at much lower water potentials than those in unaltered (control) pine bark. Finally, HYDRUS models were utilized to simulate water flux through containerized substrates. These models allowed for better understanding of how individual hydraulic properties influence substrate water flux, and provided insight towards proportions of inaccessible pores, which do not maintain sufficient levels of available water. With the models, researchers will be able to simulate new substrates, and utilize model predictions to provide insight toward new substrates prior to implementing production tests. It has been determined, that increasing substrate hydraulic conductivity, which can be done with just commonly used components, water requirements for production can be reduced, to produce crops with minimal wasted water resources. Concluding, that re-engineering substrate hydrology can ameliorate production sustainability and decrease environmental impact. / Ph. D.

Vertisols cover a hydrologically very significant area of semi-arid regions, and thus understanding of water flow and solute accumulation is very relevant to agricultural activity and water resources management. Previous works suggest a conceptual model of desiccation-crack-induced salinization where salinization of sediment in deep section of the vadose zone (up to 4 m) is induced by subsurface evaporation due to convective air flow in desiccation cracks. This thesis presents a conceptual model of water flow and solute transport in vertisols, and its numerical implementation. The model uses a single-porosity material but unconventionally prescribes a boundary condition representing a deep crack in soil and uses the unsaturated hydraulic conductivity as one of the fitting parameters. The numerical model is bound to one location close to a dairy farm waste pond, but the application of the suggested conceptual model could be possibly extended to all semi-arid regions with vertisols. Simulations were conducted using several modelling approaches with an ultimate goal of fitting the simulation results to the controlling variables measured in the field: water content, and chloride salinity of pore water. The development of the model was engineered in numerous steps; all computed as forward solutions by...

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In urban areas, trees are often planted in bare soil sidewalk openings (tree pits) which recently are being covered with permeable pavements. Pavements are known to alter soil moisture and temperature, and may have implications for tree growth, root development and depth, drought resilience, and sidewalk lifting. Furthermore, tree pits are often the only unsealed soil surface and are important for water exchange between soil and atmosphere. Therefore, covering tree pits with pavement, even permeable, may have implications for the urban water balance and stormwater management. A better understanding of permeable pavement on tree pavement soil system functioning can inform improved tree pit and street design for greater sustainability of urban environments. We conducted experiments at two sites in Virginia, USA (Mountains and Coastal Plain) with different climate and soil. At each location, we constructed 24 tree pits in a completely randomized experiment with two factors: paved with resin-bound porous-permeable pavement versus unpaved, and planted with Platanus x acerifolia 'Bloodgood' versus unplanted (n = 6). We measured tree stem diameter, root growth and depth, and soil water content and temperature over two growing seasons. We also monitored tree sap flow one week in June 2017 at the Mountains. In addition, we calibrated and validated a soil water flow model, HYDRUS-1D, to predict soil water distribution for different rooting depths, soil textures and pavement thicknesses. Trees in paved tree pits grew larger, with stem diameters 29% (Mountains) and 51% (Coastal Plain) greater. Roots developed faster under pavement, possibly due to the increased soil water content and the extended root growing season (14 more days). Tree transpiration was 33% of unpaved and planted pit water outputs, while it was 64% for paved and planted pits. In June 2016, planted pits had decreased root-zone water storage, while unplanted pits showed increased storage. A water balance of the entire experimental site showed overall decreased soil water storage due to tree water extraction becoming the dominant factor. HYDRUS-1D provided overall best results for model validation at 10 cm depth from soil surface (NSE = 0.447 for planted and paved tree pits), compared to 30- and 60 cm depths. HYDRUS-1D simulations with greater pavement thickness resulted in changes in predicted soil water content at the Coastal Plain, with higher values at 10- and 30-cm depths, but lower values at 60-cm depth. At the Mountains, virtually no difference was observed, possibly due to different soil texture (sandy vs clayey). Tree pits with permeable pavement accelerated tree establishment, but promoted shallower roots, possibly increasing root-pavement conflicts and tree drought susceptibility. Paved tree pits resulted in larger trees, increasing tree transpiration, but reduced soil evaporation compared to unpaved pits. Larger bare soil pits surrounded by permeable pavement might yield the best results to improve urban stormwater retention. Also, HYDRUS 1D was successful at simulating soil water content at 10-cm depth and may be valuable to inform streetscape design and planning. / PHD / Trees in cities are often planted in pavement cutouts (tree pits) that are usually the only available area for water exchange between soil and atmosphere. Tree pits are typically covered with a variety of materials, including permeable pavement. Pavements are known to modify soil water distribution and temperature, affecting tree growth, rooting depth, drought resilience, and sidewalk lifting. A better understanding of this system can inform tree pit and street design for greater sustainability. We constructed 24 tree pits at each of two regions in Virginia, USA (Mountains and Coastal Plain). These tree pits were paved with permeable pavement or unpaved, and planted with London Plane or unplanted. We measured stem diameter, root growth, and soil water content and temperature over two years and tree sap flow for one week in summer (Mountains only). We also used a soil water flow model, HYDRUS-1D, to predict water distribution for different rooting depths, soil textures and pavement thicknesses. After the first growing season trees in pavement were larger, with stem diameters 29% (Mountains) and 51% (Coastal Plain) greater. Roots developed faster under pavement, possibly due to increased soil water content and a 14-day increase in root growing season. Also, in June 2017, tree transpiration was 33% of unpaved-and-planted pit water outputs, and 64% of paved-and-planted pits. In June 2016, root-zone water storage decreased in planted pits but increased in unplanted pits. When considering the entire experimental site, soil water storage decreased, with tree water extraction being the dominant factor. HYDRUS-1D performed better at 10-cm soil depth than at 30- and 60-cm depths. At the Coastal Plain, HYDRUS-1D predicted higher soil water content at 10- and 30-cm depths with increased pavement thickness, but lower values at 60-cm depth. At the Mountains, there was no effect, possibly due to higher clay content. Permeable pavement accelerated tree establishment, but promoted shallower roots, increasing drought susceptibility and risk for root-pavement conflicts. Pavement resulted in larger trees and greater transpiration, but reduced soil evaporation. Larger bare-soil pits surrounded by permeable pavement might optimize stormwater retention.

Land application of wastes has become increasingly popular, to promote nutrient recycling and environmental protection, with soil functioning as a partial barrier between wastes and groundwater. Dairy shed effluent (DSE), may contain a wide variety of pathogenic micro-organisms, including bacteria (e.g. Salmonella paratyphyi, Escherichia coli. and Campylobacter), protozoa and viruses. Groundwater pathogen contamination resulting from land-applied DSE is drawing more attention with the intensified development of the dairy farm industry in New Zealand. The purpose of this research was to investigate the fate and transport of bacterial indicator-faecal coliform (FC) from land-applied DSE under different irrigation practices via field lysimeter studies, using two water irrigation methods (flood and sprinkler) with contrasting application rates, through the 2005-2006 irrigation season. It was aimed at better understanding, quantifying and modelling of the processes that govern the removal of microbes in intact soil columns, bridging the gap between previous theoretical research and general farm practices, specifically for Templeton soil. This study involved different approaches (leaching experiments, infiltrometer measurements and a dye infiltration study) to understand the processes of transient water flow and bacterial transport; and to extrapolate the relationships between bacterial transport and soil properties (like soil structure, texture), and soil physical status (soil water potential ψ and volumetric water content θ). Factors controlling FC transport are discussed. A contaminant transport model, HYDRUS-1D, was applied to simulate microbial transport through soil on the basis of measured datasets. This study was carried out at Lincoln University’s Centre for Soil and Environmental Quality (CSEQ) lysimeter site. Six lysimeters were employed in two trials. Each trial involved application of DSE, followed by a water irrigation sequence applied in a flux-controlled method. The soil columns were taken from the site of the new Lincoln University Dairy Farm, Lincoln, Canterbury. The soil type is Templeton fine sandy loam (Udic-Ustochrept, coarse loamy, mixed, mesic). Vertical profiles (at four depths) of θ and ψ were measured during leaching experiments. The leaching experiments directly measured concentrations of chemical tracer (Br⁻ or Cl⁻) and FC in drainage. Results showed that bacteria could readily penetrate through 700 mm deep soil columns, when facilitated by water flow. In the first (summer) trial, FC in leachate as high as 1.4×10⁶ cfu 100 mL⁻¹ (similar to the DSE concentration), was detected in one lysimeter that had a higher clay content in the topsoil, immediately after DSE application, and before any water irrigation. This indicates that DSE flowed through preferential flow paths without significant treatment or reduction in concentrations. The highest post-irrigation concentration was 3.4×10³ cfu 100 mL⁻¹ under flood irrigation. Flood irrigation resulted in more bacteria and Br⁻ leaching than spray irrigation. In both trials (summer and autumn) results showed significant differences between irrigation treatments in lysimeters sharing similar drainage class (moderate or moderately rapid). Leaching bacterial concentration was positively correlated with both θ and ψ, and sometimes drainage rate. Greater bacterial leaching was found in the one lysimeter with rapid whole-column effective hydraulic conductivity, Keff, for both flood and spray treatments. Occasionally, the effect of Keff on water movement and bacterial transport overrode the effect of irrigation. The ‘seasonal condition’ of the soil (including variation in initial water content) also influenced bacterial leaching, with less risk of leaching in autumn than in summer. A tension infiltrometer experiment measured hydraulic conductivity of the lysimeters at zero and 40 mm suction. The results showed in most cases a significant correlation between the proportion of bacteria leached and the flow contribution of the macropores. The higher the Ksat, the greater the amount of drainage and bacterial leaching obtained. This research also found that this technique may exclude the activity of some continuous macropores (e.g., cracks) due to the difference of initial wetness which could substantially change the conductivity and result in more serious bacterial leaching in this Templeton soil. A dye infiltration study showed there was great variability in water flow patterns, and most of the flow reaching deeper than 50 cm resulted from macropores, mainly visible cracks. The transient water flow and transport of tracer (Br⁻) and FC were modelled using the HYDRUS-1D software package. The uniform flow van Genuchten model, and the dual-porosity model were used for water flow and the mobile-immobile (MIM) model was used for tracer and FC transport. The hydraulic and solute parameters were optimized during simulation, on the basis of measured datasets from the leaching experiments. There was evidence supporting the presence of macropores, based on the water flow in the post-DSE application stage. The optimised saturated water content (θs) decreased during the post-application process, which could be explained in terms of macropore flow enhanced by irrigation. Moreover, bacterial simulation showed discrepancies in all cases of uniform flow simulations at the very initial stage, indicating that non-equilibrium processes were dominant during those short periods, and suggesting that there were strong dynamic processes involving structure change and subsequently flow paths. It is recommended that management strategies to reduce FC contamination following application of DSE in these soils must aim to decrease preferential flow by adjusting irrigation schemes. Attention needs to be given to a) decreasing irrigation rates at the beginning of each irrigation; b) increasing the number of irrigations, by reducing at the same time the amount of water applied and the irrigation rate at each irrigation; c) applying spray irrigation rather than flood irrigation.