In Southeast Asia, the family Pangasiidae is important for commercial fisheries and aquaculture. Pangasianodon hypophthalmus (striped catfish) is the most economically important species farmed in Vietnam, with a total export value of 1.7 billion USD in 2012. Intensive aquaculture can lead to problems with major outbreaks of disease and Edwardsiella ictaluri and Aeromonas hydrophila represent two important bacterial pathogens in P. hypophthalmus aquaculture. Immunostimulants have proven to be a very useful food additive for the aquaculture industry, since they can be easily fed to fish to enhance their immune response at times of stress and to improve resistance to disease. The immune system of pangasius catfish has not been fully described, despite the recent growth in aquaculture for this species, and little is known about the effects of immunostimulants on disease resistance. Understanding the immune response is very important in order to evaluate the health status of the fish and assist in control of disease (including prevention) so that production levels by the aquaculture industry can be sustained. The aims of this thesis were to develop and standardise methods to elucidate and measure immune responses in P. hypophthalmus and then to use these with relevant disease models (A. hydrophila and E. ictaluri) and immunomodulators (β-glucans from different sources and at different doses) to determine if bacterial diseases can be controlled, and which functional immune responses and immune genes could be correlated with disease resistance. As a variety of different species from family Pangasiidae are economically important for aquaculture, initial work focused on the characterisation of the immunoglobulin IgM molecule in these species, and anti-P. hypophthalmus IgM mAbs were tested to determine if they cross-reacted between different Pangasiidae species (Chapter 2). Although affinity purification of IgM from the different fish species resulted in a purer preparation ammonium sulphate precipitation (14% w/w), the latter proved faster and easier to perform. The heavy (H) and light (L) chains of IgM from P. hypophthalmus were estimated to be 70-72 kDa and 25-26 kDa, respectively, using SDS-PAGE (12.5%). The L chains of IgM in the other Asian fish species examined were similar in molecular weight to P. hypophthalmus, while the H chains varied (P. gigas and P. larnaudii 76kDa, P. sanitwongsei 69kDa, H. filamentus 73kDa, P. borcoti and H. wyckioides 75kDa, C. bactracus 74kDa, C. macrocephalus 73kDa and C. carpio 70kDa), as did the native IgM molecules. Sedimentation velocity ultracentrifugation was used to determine the molecular weight of the whole IgM molecule from P. hypophthalmus as an alternative to the more commonly used native gels that are run under non-denaturing conditions, although this technique proved more complex. Anti–P. hypophthalmus IgM monoclonal antibodies (mAbs) cross reacted with all of the Pangasiidae species and were successfully applied in an enzyme-linked immunosorbent assay (ELISA) using mAb 23 to measure serum antibody response of P. hypoophthalmus following experimental infection with A. hydrophila by interperitoneal (I.P.) injection in Chapter 3 and E. ictaluri by immersion in Chapter 4. As P. hypophthalmus is a relatively new aquaculture species, there are few reports evaluating its immune response to pathogens. Thus, functional assays were standardised to evaluate both innate and adaptive immune responses of this species and then these assays used to compare immune response following stimulation with live and killed A. hydrophila. (Chapter3). Four treatment groups of 40 fish per group (53.2 ± 14.8g.) consisting of an untreated control group, a group injected I.P. with adjuvant (Montanide ISA 760 VG) only, a group injected with heat-killed A. hydrophila (1 x109 cfu ml-1 mixed with adjuvant), and a group injected with a subclinical dose of live A. hydrophila 2.7 x105 cfu ml-1 were used in the study. Samples were collected 0, 1, 3, 7, 14 and 21 days post injection (d.p.i.) to assess the immune response of fish. The results indicated that challenge with live or/and dead bacteria stimulated the immune response in P. hypophthalmus significantly above control groups with respect to specific antibody titre, lysozyme activity, phagocytosis and plasma peroxidase at 7 or/and 14 d.p.i. Moreover, on 21 d.p.i. total IgM, specific antibody titre and lysozyme activity from both live and dead A. hydrophila challenge groups were significantly different to the control groups. Differential immune responses between live and dead bacterial challenges were also observed as only live A. hydrophila significantly stimulated WBC counts and plasma peroxidase at 3 d.p.i. with the greatest increase in WBC counts noted at 21 d.p.i. and in phagocytosis at 14 d.p.i. By 21 d.p.i. only the macrophages from fish challenged with dead A. hydrophila showed significantly stimulated respiratory burst activity. Immunostimulants are food additives used by the aquaculture industry to enhance the immune response, and β-glucan is now commonly used for this purpose in aquaculture. In Chapter 4 the effect of the prebiotic β-glucan on the immune response and disease resistance of P. hypophthalmus was evaluated. The fish (60.3 ± 11.7 g.) were fed with a basal diet (control) or diets supplemented with fungal derived β-glucan at concentrations of 0.05 %, 0.1 %, or 0.2 % g/kg for four weeks. Fish fed 0.1 % commercial yeast derived β-glucan were also included as a positive control group. Samples were collected from fish on Days 0, 1, 3, 7, 14, 21 and 28. The results showed that fish fed with the highest two levels of fungal derived β-glucan had enhanced immune responses compared to the control group, with respiratory burst activity on all days examined and lysozyme activity on 7 days post feeding (d.p.f.) being significantly elevated (P<0.05) in the group fed with 0.2 % fungal derived β-glucan, while plasma anti-protease activity on 21 d.p.f., natural antibody titre on 3 d.p.f. and complement activity 7 d.p.f. and 14 d.p.i. were significantly enhanced (P<0.05) in the group fed 0.1 % fungal derived β-glucan. The lowest dose of fungal derived β-glucan (0.05 %) appeared insufficient to effectively stimulate the fish’s immune response. WBC count, respiratory burst, lysozyme activity and complement were useful as an early indication of immunostimulation (1 to 7 days). Four weeks after feeding with the different diets, the fish were experimentally infected with E. ictaluri by immersion using 8 x104 cfu ml-1 for 1 h and mortalities were monitored for 14 days. There was a great deal of variation in the level of mortalities within the four replicate tanks for each dietary group. Although the in vivo challenge results showed no statistical differences between the groups fed on the different diets, the highest mortalities were observed in group fed with the control diet and the lowest mortalities were observed in the groups fed with commercial yeast derived β-glucan and 0.2 % fungal derived β glucan. Immune gene expression following stimulation with β-glucan and challenge with E. ictaluri was investigated in Chapter 5.

Disease outbreaks continue to be a major problem in the sustainable development of the aquaculture industry. Clinical outbreaks can negatively impact on the welfare of the fish and the economic gain derived from this industry. Jaundice observed as a yellow colouration in the abdominal skin, sclera of the eyes and fin bases is a significant health problem affecting the Vietnamese freshwater catfish industry. This study was designed to investigate jaundice of farmed catfish, Pangasianodon hypophthalmus using several complementary approaches. These included clinical investigations and identification of potential aetiological agents as well as epidemiological analyses to identify farm-based risk factors for this economically devastating condition occurring in the catfish farms of the Mekong Delta. The results of this survey demonstrated that the jaundice was not linked to a single geographical location as affected fish were found widely distributed throughout the five main production areas. Nor was any association found between any weight groupings, feed type or feeding regime applied in the affected farms. The highest prevalence occurred between June to October and fish mortalities ranged from 1 to 10% in the study sites. The duration of this condition was significantly correlated (P &lt; 0.05) to mortality but not to total farm area, depth of pond, stocking density, or amount of water exchanged. The number of fish ponds affected was not as high in the large-scale farms compared to the small-scale farms. The results from the clinical description study showed that the affected fish were suffering a form of jaundice or icterus. Histological examination revealed a number of serious pathologies in the affected fish. Spleenomegaly was associated with the loss of cell structure and connective tissue and the haematopoietic tissue had large areas of necrosis. In the liver, histological changes consisted of vasculitis and multifocal to diffuse hepatocellular necrosis. The presence of haemosiderin was observed in melano-macrophage centres in the spleen and kidney of jaundiced fish. No single pathogen was identified in the jaundiced fish. Myxosporean infection was found in both apparently normal fish and jaundiced fish. However, there was a definite tendency for jaundiced fish to be more heavily infected. Histopathological examination found several changes that could not be ascribed to specific aetiological factors and presume that both groups (jaundiced alone and myxosporean-affected jaundiced fish) have similar lesions. The results of this study would suggest that the parasite identified as M. pangasii was not a primary pathogen associated with the haemolytic jaundice. Neither were the gills myxosporeans associated with the haemolytic jaundice and they may be considered more as a nuisance rather than as primary pathogens in farmed P. hypophthalmus in the Mekong Delta, Vietnam. Univariate analysis of the whole dataset showed several variables were significantly associated with the haemolytic jaundice. However, none of the variables achieved lasting statistical relevance in multivariable models. In conclusion, this study identified a haemolytic jaundice condition affecting farmed P. hypophthalmus in Vietnam, but no single aetiological agent or farm based risk factor was identified with this condition. Several priority areas for further work were identified and include a prospective, longitudinal cohort study to identify further the risk factors associated with the clinical jaundice condition.

Bacillary Necrosis of Pangasius (BNP) caused by Edwardsiella ictaluri is considered to be the most serious disease occurring in farmed striped catfish (Pangasianodon hypophthalmus) in Vietnam. This disease has had an increasing impact over the last ten years and has been reported to cause 50-90% mortality of stocks during a single outbreak. Data obtained from natural outbreaks of E. ictaluri in striped catfish showed the role of environmental factors in the establishment and progression of this disease. At present, factors affecting the virulence and transmission of E. ictaluri in striped catfish are poorly understood. The central hypothesis of this thesis focuses on the complex picture of the environmental factors and infectivity of E. ictaluri in striped catfish. In this study, 80 isolates of E. ictaluri recovered from natural clinical disease outbreaks occurring in striped catfish farms between 2002 and 2011 located in 4 distinct geographical areas within Vietnam were characterised using a variety of methods. The biochemical profiles showed that E. ictaluri isolates from striped catfish in Vietnam have similar phenotypic characteristics to other E. ictaluri isolates from other infected fish species. These data showed high levels of phenotypic homogeneity between the E. ictaluri isolates investigated. The status of isolates recovered from natural infections over time and from geographically distinct farms was evaluated using pulsed-field gel electrophoresis (PFGE), plasmid profile identification and antibiotic sensitivity tests. The PFGE results showed 6 main groups with a similarity of 82% and the corresponding genotypes of the prevalent isolates illustrated annual differences. Three plasmid groups were identified distributed among the isolates investigated, in which high molecular weight plasmids of approximately 35 and 140 kb were found in two of the groups. Plasmid profiles of the present study did not show any trend of geographical region or year of isolation. The 140 kb plasmid has been considered as a multi-antibiotic resistance plasmid which confers resistance to tetracycline, trimethoprim and sulphonamides. All Vietnamese isolates showed a high level of resistance to Oxolinic acid, Sulfadimethoxine/Ormetoprim (Romet), Oxytetracycline and Amoxicillin. A reproducible bacterial immersion challenge model was developed and the LD60 estimated prior to performing subsequent experimental challenge studies. Fish were exposed to 107 cfu ml-1 of E. ictaluri by immersion for up to 30 seconds, resulting in a cumulative percentage mortality of 63%. Edwardsiella ictaluri was recovered and identified from all the dead and moribund fish during these experiments and affected fish showed similar clinical signs and pathology to those reported from natural E. ictaluri infections. The present study resulted in a successful experimental immersion challenge model for E. ictaluri infection in healthy striped catfish. Cohabitation challenges were also developed and produced 15-40% mortality, typical clinical signs and pathology, and successful recovery of the challenge organism demonstrating horizontal transmission of E. ictaluri in striped catfish. Experimental studies were then conducted to investigate the association between pH or salinity of water and susceptibility to E. ictaluri infection in striped catfish. The first experiments were performed in in vitro conditions in which E. ictaluri isolates were cultured in a variety of pH and salt concentrations. In vivo experiments were then designed where striped catfish were exposed to 107 cfu ml-1 of E. ictaluri for 30 seconds and then held at 4 different water pHs (5.5, 6.5, 7.5 and 8.5) or NaCl concentrations (0, 0.5, 1 and 1.5%). The results of in vitro experiments showed that a pH value between 5.5 to 6.5 and salt concentration between 0-0.5% were optimal for the growth of E. ictaluri. The in vivo experiments demonstrated that the cumulative mortality of striped catfish in water at pH 5 and pH 6 was significantly higher than that of fish maintained in more alkaline water (p<0.05). By contrast, the cumulative mortality of the striped catfish maintained in 0.5% salt concentration was significantly lower than those kept in 0%, 1% and 1.5% salt concentration (p<0.05). Clinical signs, lesions and histopathological changes in the affected fish were consistent with those reported in natural infections. This study highlighted the use of pH 8.5 and salinity of 0.5% NaCl as a means of decreasing the susceptibility of striped catfish to E. ictaluri. In conclusion, this study used a variety of methods in order to enhance the understanding of the biochemical, biophysical characteristics, plasmid profile and antibiotic resistance as well as the relatedness of E. ictaluri isolates recovered from farmed striped catfish in Vietnam. This study provided two reliable and reproducible bacterial challenge models (immersion and cohabitation) and emphasised the link between pH and salinity with the infectivity and pathogenicity of E. ictaluri in striped catfish.

Submitted by Cássio da Cruz Nogueira (cassionogueirakk@gmail.com) on 2017-05-15T17:29:00Z No. of bitstreams: 2 license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Dissertacao_CaracterizacaoEstruturalUltraestrutural.PDF: 855507 bytes, checksum: c7a91308a0fcd2fd22112a69f16c24c7 (MD5) / Approved for entry into archive by Edisangela Bastos (edisangela@ufpa.br) on 2017-05-19T13:10:27Z (GMT) No. of bitstreams: 2 license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Dissertacao_CaracterizacaoEstruturalUltraestrutural.PDF: 855507 bytes, checksum: c7a91308a0fcd2fd22112a69f16c24c7 (MD5) / Made available in DSpace on 2017-05-19T13:10:27Z (GMT). No. of bitstreams: 2 license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Dissertacao_CaracterizacaoEstruturalUltraestrutural.PDF: 855507 bytes, checksum: c7a91308a0fcd2fd22112a69f16c24c7 (MD5) Previous issue date: 2014-09-05 / CVRD - Companhia Vale do Rio Doce / FAPESPA - Fundação Amazônia de Amparo a Estudos e Pesquisas / FAPESP - Fundação de Amparo à Pesquisa do Estado de São Paulo / Hypophthalmus marginatus é um siluriforme, pertencente à família Pimelodidae. Na Amazônia oriental esta espécie é altamente consumida, e possui uma grande importância sócio-econômica para a região. Estudo da caracterização histológica do sistema reprodutivo ainda é desconhecido nesta espécie. Portanto, este estudo serve de ferramenta para as técnicas de biotecnologia, necessárias para a produção em cativeiro, visto que a espécie é um dos recursos pesqueiro mais explorado pela pesca artesanal. O objetivo do presente estudo foi estudar aspecto estrutural e ultraestrutural das células do epitélio germinativo de Hypophthalmus marginatus durante a espermatogênese. Foram capturados 168 espécimes no período entre dezembro de 2011 a dezembro de 2012. Macroscopicamente foram identificados 69 machos adultos, ainda em campo foi realizada uma incisão ventral e fragmentos da região mediana dos testículos e sêmen foram retirados e submetidos ao processamento e análise em microscopia de luz, microscopia eletrônica de transmissão e varredura. Os estudos evidenciaram que as células germinativas se proliferam no interior do cisto espermático de forma sincrônica. As espermátides entram no processo de espermiogênese passando por três fases distintas de diferenciação celular. O núcleo não se move em relação ao eixo flagelar e os centríolos não migram para o núcleo. Os espermatozóides liberados no lúmen do túbulo seminífero apresentaram uma cabeça esférica com o núcleo altamente condensado e sem acrossoma, a peça intermediária curta contendo um único flagelo longo com axonema apresentando o microtúbulo padrão (9+2), a fossa nuclear excêntrica alojava parcialmente o centríolo proximal. A presença de células espermatogênicas na mesma subfase da meiose no interior do cisto é caracterizada como espermatogênese cística, com desenvolvimento sincrônico das células, Isto sugere que espermiogênese de H. marginatus seja do tipo III e a presença da fossa nuclear é considerada uma característica distinta para a espécie, o que difere de outros pimelodideos. / Hypophthalmus marginatus is a siluriforme, belonging to the family Pimelodidae. This species is highly consumed in eastern Amazonia and has a wide socio-economic importance to the region. Studies on the histological characterization of the reproductive system are still unknown in this species. Therefore, this study serves as a tool for biotechnology techniques, necessary for the production in captivity, since this species is one of the fishing resource most intensively exploited by artisanal fisheries. The aim of this study was to characterize the structural and ultrastructural features of germinal epithelium cells of Hypophthalmus marginatus during spermatogenesis. 168 specimens were collected from December 2011 to December 2012. Macroscopically were identified 69 adult males. In field, ventral incision was held in fishes and fragments of testicles from the median region and semen were removed. Then the material was subjected to processing and analysis of light microscopy, transmission electron microscopy and scanning. The data revealed that the germ cells proliferate inside the spermatic cyst synchronously. Spermatids enter at the spermiogenesis process through three distinct stages of cell differentiation. The nucleus does not move relative to the axis flagellar and the centrioles don't migrate to the nucleus. The spermatozoids showed a spherical head with the highly condensed nucleus and no acrosome. The intermediary piece was short containing a single long flagellum. The axoneme presents the structure of microtubules within the pattern (9 + 2). The nuclear fossa housed the proximal centriole partially. The presence of spermatogenic cells in the same subphase of meiosis inside the cyst is characterized as cystic spermatogenesis, with synchronous growth of the cells. This suggests that spermiogenesis of H. marginatus is of type III and the presence of nuclear fossa is considered a distinctive feature for the species, which differs from other pimelodids.