Phenylephrine (PE) is the most commonly used over-the-counter nasal decongestant. The problem associated with phenylephrine is that it undergoes extensive first pass metabolism in the intestinal gut wall leading to its poor and variable oral bioavailability. This research project aims at developing strategies in order to increase the oral bioavailability of PE by co-administration of GRAS compounds. A HILIC assay method was developed to detect the parent drug, phenylephrine (PE) and its sulfate metabolite (PES).The enzyme kinetic studies were done with phenolic dietary or GRAS compounds using LS180 human intestinal cell model, recombinant SULT enzymes and human intestinal cytosol (HIC). From the screening studies done, one inhibitor was selected in order to study the mechanism of inhibition. In conclusion the studies done in vitro provided a basis in order to predict in vivo intrinsic clearance through the sulfation pathway.

No description available.

Understanding the complex metabolic networks present in organisms, through the use of high throughput liquid chromatography coupled mass spectrometry, will give insight into the physiological changes responding to stress. However the lack of a proper work flow and robust methodology hinders verifiable biological interpretation of mass profiling data. In this study a novel workflow has been developed. A novel Kernel based feature alignment algorithm, which outperformed Agilent’s Mass profiler and showed roughly a 20% increase in alignment accuracy, is presented for the alignment of mass profiling data. Prior to statistical analysis post processing of data is carried out in two stages, noise filtering is applied to consensus features which were aligned at a 50% or higher rate. Followed by missing value imputation a method was developed that outperforms both at model recovery and false positive detection. The use of parametric methods for statistical analysis is inefficient and produces a large number of false positives. In order to tackle this three non-parametric methods were considered. The histogram method for statistical analysis was found to yield the lowest false positive rate. Data is presented which was analysed using these methods to reveal metabolomic changes during plant pathogenesis. A high resolution time series dataset was produced to explore the infection of Arabidopsis thaliana by the (hemi) biotroph Pseudomonas syringe pv tomato DC3000 and its disarmed mutant DC3000hrpA, which is incapable of causing infection. Approximately 2000 features were found to be significant through the time series. It was also found that by 4h the plants basal defence mechanism caused the significant ‘up-regulation’ of roughly 400 features, of which 240 were found to be at a 4-fold change. The identification of these features role in pathogenesis is supported by the fact that of those features found to discriminate between treatments a number of pathways were identified which have previously been documented to be active due to pathogenesis

Les catécholamines et les indolamines font partie de la famille des neurotransmetteurs. Un déséquilibre dans leur concentration peut être associé à différentes maladies telles les maladies de Parkinson et Alzheimer, la dépression ou la schizophrénie. C’est pourquoi le développement de méthodes de dosage spécifiques et très sensibles du fait de leurs très faibles teneurs dans les fluides biologiques est nécessaire. Dans un premier temps nous avons développé une méthode chromatographique en appariement d’ions (IP-LC) utilisant des colonnes C18 de nouvelle génération (monolithique et « fused core ») et l’acide nonafluoropentanoïque, comme agent d’appariement d’ions volatil. Cette méthode est compatible avec une détection SM en mode d’ionisation positive. Dans un deuxième temps, différents systèmes en mode HILIC ont été évalués. Le choix raisonné de la phase stationnaire offrant la meilleure séparation du mélange de catécholamines a pu être réalisé après avoir testé l’influence sur la séparation des différents groupements fonctionnels disponibles : groupement soit neutre (greffage diol, amide, ou cyano), soit positivement chargé (greffage amino ou triazole) soit négativement chargé (silice vierge avec particules totalement poreuses ou partiellement poreuses « fused core ») ou zwitterionique (greffage sulfobetaïne). La méthode HILIC présente l’avantage d’être compatible aussi bien avec une détection SM en mode d’ionisation positive que négative. Les deux méthodes (IP-LC et HILIC) ont été comparées en termes de résolution, efficacité et limites de détection (LOD), linéarité et répétabilité. Les LODs obtenues sont comprises entre 1 et 100 ng.mL-1. Pour pouvoir doser des teneurs plus faibles, une méthode de pré-concentration de l’échantillon a été développée en associant 2 supports différents (Oasis HLB et PGC). La méthode optimisée SPE-CPL-MS/MS a été enfin appliquée à un extrait de cerveau de mouton. / As neurotransmitters, catecholamines play an important role in the control and regulation of numerous brain functions. They are also believed to be implicated in different neurodegenerative disorders. First an ion pairing chromatography method using nonafluoropentanoic acid as volatile ion paring agent was developed on the new generation of C18 columns (monolith and fused core). This method is compatible with MS detection in positive ionization mode. Secondly an HILIC method was optimized using different commercially available HILIC supports, they can be classified as follows: neutral (diol, amide, and cyano bounded), positively charged (amino, triazole bounded), negatively charged (bare silica as wholly porous particles or fused core particles columns) and zwitterionic (sulfobetaine bounded). Our studies lead us to a better understanding of the HILIC retention mechanism and also to the selection of the most appropriated column for catecholamine analysis. Only the HILIC system was compatible with both positive and negative ionization modes. The two chromatographic systems were then compared in terms of resolution, efficiency, detection and quantification limits (LOD/LOQ), calibration linearity and repeatability. The LODs obtained were in the range of 1-100 ng.mL-1. A simple pre-concentration method using Oasis HLB and PGC solid phase extraction cartridges has been optimized in order to enhance the LODs. Finally the optimized SPE-LC-MS/MS method has been applied to the identification of these compounds present in brain extracts.

No description available.

Isocyanates, aromatic-, aliphatic- and alkanolamines are commonly used in the industry today. Millions of workers in Europe are exposed. The most frequent health symptoms are respiratory and dermal disorder. Due to the health risk most of the compounds in this thesis are regulated by authorities and have occupational exposure limits (OELs). Consequently, reliable and robust air sampling methods are urgently needed. In this thesis dry samplers for isocyanates, aliphatic- and alkanolamines have been developed and evaluated. The isocyanate sampler is now a commercial product (ASSET EZ4-NCP Dry Sampler, Supelco). The samplers were based on a denuder with a filter in series. The denuder and filter were impregnated with di-n-butylamine for the isocyanate sampler and with sulphuric acid for the aliphatic- and alkanolamine sampler. The robustness of the dry samplers was extensively evaluated. This was performed in a climate chamber containing a controlled atmosphere of the studied compounds. New methods based on hydrophilic interaction liquid chromatography (HILIC) coupled with tandem mass spectrometry (MSMS) were developed for determination of aromatic-, aliphatic- and alkanolamines in aqueous solutions. Isocyanates were determined by reversed-phase liquid chromatography MSMS. HILIC in combination with MS is a most powerful system, and highly sensitive determinations, several orders of magnitude below the OELs, of polar compounds present in the work environment can be accomplished. The selected samplers enable sampling during short sampling times and for whole work shifts. The samplers can be stored for months before and after sampling. The performance of the samplers was unaffected by variation in temperature, humidity, flow-rate and pre- and post-sampling of ambient air. Sampling for the compounds studied is now greatly simplified, and assessment of the work environment is facilitated. / <p>At the time of the doctoral defence the following papers were unpublished and had a status as follows: Paper 1: Epub ahead of print; Papers 3-5: Manuscripts</p>

Biopharmaceuticals are becoming one of the most promising drugs on the market mainly due to their successful treatment of a vast array of serious diseases, such as cancers, immune disorders, and infections. Structurally, biopharmaceuticals are proteins and it is important to mention that more than 60 % of biopharmaceuticals are glycosylated. Glycosylation is one of the most common posttranslational modifications. It is also the most demanding and the most complex posttranslational modification. The research showed that glycosylation can significantly impact on the safety, efficiency, and quality of the therapeutic glycoproteins. In the first part of the introduction of the present thesis, the development of the therapeutic glycoproteins and their classification were reviewed. Glycosylation process and nomenclature were also discussed. The second part of the introduction revealed current issues in the field of the production and the characterization of the therapeutic glycoproteins. In the context of the doctoral thesis, we introduced new approach, namely hydrophilic interaction liquid chromatography coupled to a high-resolution mass spectrometer (HILIC-HR-MS) combined with Principal Component Analysis (PCA) and classification through Soft Independent Modelling by Class Analogy (SIMCA) data treatment. Accordingly, N-glycans were first enzymatically released using peptide-N-glycosidase F (PNGase F) and reduced using sodium borohydride. Then those N-glycans were separated by HILIC and detected by HR-MS. PCA and SIMCA simplified interpretation of the MS data collected in the huge tables. PCA was applied to test whether it is possible to visualize N-glycosylation differences between samples and to help identifying within which N-glycans changes occurred. SIMCA, which is a more complex data analysis technique, was applied to build and validate a classification models. SIMCA was also applied to verify whether it is possible to use built models to classify real samples. Described approach enabled us to detect small changes in N-glycosylation of the therapeutic glycoproteins (a change of only 1% in relative glycan abundance). It was applied to assess changes in N-glycosylation of therapeutic glycoproteins. Accordingly, we tested N-glycosylation consistency between batches of infliximab, trastuzumab, and bevacizumab and monitored the N-glycosylation of bevacizumab over storage time in plastic syringes.Furthermore, we worked on the faster sample preparation technique, where online-solid-phase extraction (SPE)-LC was combined to the previously mentioned HILIC-MS-PCA/SIMCA method. Online-SPE-LC allowed us to faster the sample preparation in terms of avoiding time-consuming cleaning steps. / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

No description available.

The objective of this research is to develop and apply a HILIC UHPLC stationary phase that allows for separation of intact glycoproteins. In Chapter 1 I give an overview of the problems of current glycosylation profiling with regards to biotherapeutics, and my strategy to separate the intact glycoprotein with HILIC. Chapter 2 describes the methods used to produce the nonporous packing material and stationary phase. In Chapter 3 I describe previous work in developing a HILIC polyacrylamide stationary phase, and further improvements I have made. Chapter 4 describes development of an assay in collaboration with Genentech of therapeutic mAb glycosylation. In Chapter 5, I show HILIC-MS of digested ribonuclease B as a beginning step to analyze glycosylated biomarkers.

Les liquides diffèrent des solides par une réponse retardée à la sollicitation en cisaillement; c’est-à-dire une absence d’élasticité de cisaillement et un comportement d'écoulement à basses fréquences (<1 Hz). Ce postulat pourrait ne pas être vrai à toutes échelles. A l’échelle submillimétrique, les mesures viscoélastiques (VE) réalisées en améliorant l'interaction entre le liquide et le substrat, montrent qu’une élasticité basses-fréquences existe dans des liquides aussi variés que les polymères, les surfondus, les liquides à liaison H, ioniques ou van der Waals. Ce résultat implique que les molécules à l'état liquide ne seraient pas dynamiquement libres, mais élastiquement corrélées.En utilisant les propriétés biréfringentes des fluctuations prétransitionnelles qui coexistent dans la phase isotrope des cristaux liquides, nous montrons qu'il est possible de visualiser ces corrélations « cachées ». Dans des conditionssimilaires aux mesures VE, une biréfringence optique synchrone à la déformation est observée dans la phase isotrope à des fréquences aussi basses que 0.01 Hz et des températures éloignées de toute transition. Le comportement dela biréfringence basses-fréquences a des similitudes avec l'élasticité; elle est en phase avec la déformation à faibles amplitudes de déformation, puis en phase avec le taux de déformation à plus grandes amplitudes. La biréfringence basses- fréquences est forte, sans défaut et réversible. Elle indique un ordre à longue portée. La synchronisation de la réponse à la sollicitation en fréquence et l’état ordonné qu’elle produit ne sont pas compatibles avec un état liquide isotrope mais montrent qu’il s’agit d’un état élastique soumis à déformation (entropie élastique). / Liquids differ from solids by a delayed response to a shear mechanical solicitation; i.e. they have no shearelasticity and exhibit a flow behaviour at low frequency (<1 Hz). This postulate might be not verified at thesub-millimeter scale. By optimizing the measurement in particular by improving the liquid/substrate interactions (wetting), a low frequency shear elasticity has been found in liquids including molten polymers, glass-formers, H-bond polar, ionic or van der Waals liquids. This result implies that molecules in the liquid state may not be dynamically free but weaklyelastically correlated. Using the birefringent properties of the pretransitional fluctuations coexisting in the isotropic phase of liquid crystals, we show that it is possible to visualize these “hidden” shear-elastic correlations. We detect a synchronized birefringent optical response in the isotropic phase that is observable at frequencies as low as 0.01 Hz and at temperatures far away from anyphase transition. The low-frequency birefringence exhibits a strain dependence similar to the low frequency elasticity: An optical signal that is in-phase with the strain at low strain amplitudes and in-phase with the strain-rate at larger strain amplitudes. The birefringent response is strong, defect-free, reversible and points out a collective response. This long-range ordering rules out the condition of an isotropic liquid and its synchronized response supports the existenceof long-range elastic (solid-like) correlations. In the light of this, the strain dependence of the harmonic birefringent signal and the shear elasticity may correspond to an entropy-driven transition.