Neste trabalho utilizaram-se dois sistemas para pesquisar alguns dos fatores que alteram a velocidade de reações em sistemas micelares. A reação de transferência de acila de S-octanoil-β-mercaptoetilamina (OMA) é catalisada 4,6 vezes por micelas de brometo de hexadeciltrimetilamônio (CTAB) e levemente inibida por Brij-35. A reação de transferência de acila de S para N da acetil-β-mercaptoetilamina (AMA) não é afetada por CTAB, porém é inibida cerca de 100 vezes por dodecil sulfato de sódio (SDS). A reação de OMA também é fortemente inibida por SDS (1.700 vezes). Estes efeitos foram atribuídos a uma alteração do pK do grupo amino e à diminuição da liberdade conformacional da molécula de substrato na fase micelar. O CTAB aumenta a velocidade de tiólise de acetato de p-nitrofenila por tiofenóis substituídos aproximadamente 50 vezes. A constante de velocidade calculada na fase micelar (k2m) é idêntica a obtida em fase aquosa (k2w) para tiofenol, p-metoxitiofenol e p-metiltiofenol. k2m é 40% menor do que k2w na reação com p-clorotiofenol. A aceleração observada em presença de CTAB pode ser atribuída, exclusivamente, à concentração de substrato na fase micelar. / Two systems were used in order to investigate some of the factors that modify the reaction rate in micelles. The rate of S to N acyl transfer of S-octanoyl-β- mercaptoethylamine (OMA) is enhanced by hexadecyl trimethylammonium bromide (CTAB) micelles by 4.6 fold and slightly inhibited by the non ionic detergent Brij-35. The rate of S to N transfer of S-acetyl-β-mercaptoethylamine (AMA) is unaffected by CTAB or Brij-35. Micelles of a negative detergent, sodium dodecyl sulfate inhibit the rate of S to N transfer of AMA by 100 fold, the inhibition in the case of OMA is 1.7 x 103 fold. An increase in the apparent pK of the ammonium ion and a decrease in the conformational mobility of OMA is proposed to account for the observed results. CTAB increases the rate of thiolysis of p-nitrophenyl acetate by substituted thiophenols by approximately 50 fold. The calculated rate constant in the micellar phase (k2m) is identical to that in the aqueous phase (k2w) for thiophenol, p-methoxithiophenol and p-metilthiophenol. k2m is 40% less than k2w in the case of p-clorothiophenol. The observed rate acceleration can be attributed, exclusively, to substrate concentration in the micellar phase.

La synthèse de la 5-azagalanthamine, un analogue azoté de galanthamine, utilisée dans le traitement palliatif de la maladie d’Alzheimer, a été envisagée dans le cadre d’une étude de relations structure-activité. Durant cette thèse nous avons examiné quatre voies de synthèse afin d’accéder à la 5-azagalanthamine. La première voie est basée sur la réaction de Pictet-Spengler afin de fermer le dernier cycle de l’azagalanthamine. De nombreuses tentatives ont été effectuées sur différents types de substrats mais cette stratégie s’est révélée inefficace. La deuxième approche consiste en une oxydation d’anilide ortho-substitué par un groupement méthoxy, avec un réactif à base d'iode hypervalent pour accéder à une spirodiènone, un intermédiaire clé de la synthèse. En effectuant cette réaction nous n’avons pas obtenu le produit attendu, mais une 1,2-dispirodiénone, un motif inhabituel, et très rare. Après avoir optimisé les conditions réactionnelles, nous avons étudié la généralité de la réaction avec d'autres substrats. La modélisation moléculaire ainsi que des études de voltammétrie cyclique ont été réalisées (Chabaud, L.; Hromjakova, T.; Rambla, M.; Retailleau, P.; Guillou, C. Chem. Commun. 2013, 49, 11542-11544. Hromjakova, T.; Retailleau, P.; Grimaud, L.; Gandon, V.; Chabaud, L. et Guillou, C. accepté EurJOC, 2015, DOI 10.1002/ejoc.201501160).Ensuite nous avons examiné l’approche basée sur le couplage intramoléculaire pallado-catalysé. Après les premiers résultats encourageant avec le substrat modèle nous avons réalisé une optimisation des conditions réactionnelles. Une étude de généralité de la réaction avec d'autres substrats a été effectuée. Malheureusement, il s’est avéré que la substitution sur le cycle aromatique n’était pas bien tolérée conduisant à de faibles rendements. Par conséquent cette méthodologie n’a pas pu être appliquée à la synthèse de l’azagalanthamine. Dans la dernière voie de synthèse examinée nous avons repris les travaux antérieurs entrepris dans notre laboratoire concernant la réaction de Heck intramoléculaire. La diminution de la longueur de la chaîne liant les deux cycles a permis d’obtenir des résultats très prometteurs. / The synthesis of 5-azagalanthamine, the analogue of galanthamine that is used in Alzheimer treatment, was investigated for structure - activity relationship studies.During this thesis I explored four synthetic approaches with the aim of preparing the 5-azagalanthamine. The first one is based on a Pictet-Spengler reaction used for ring closure of the last cycle of azagalanthamine. We carried out many tests on various types of substrate but this strategy has proved to be ineffective. The second approach consists of an oxidation of ortho-methoxy substituted anilide by hypervalent iodine reagent to access a spirodienone, a key intermediate of the synthesis. Interestingly this reaction did not result in the expected compound but we observed the formation of an unusual motif, the 1,2-dispirodienone. After conditions optimisation we studied the scope and limitations with others substrates. Molecular modelling and cyclic voltammetry studies were also carried out (Chabaud, L.; Hromjakova, T.; Rambla, M.; Retailleau, P.; Guillou, C. Chem. Commun. 2013, 49, 11542-11544. Hromjakova, T.; Retailleau, P.; Grimaud, L.; Gandon, V.; Chabaud, L. and Guillou, C. accepté EurJOC, 2015, DOI 10.1002/ejoc.201501160).Then we investigated an approach based on palladium-catalysed intramolecular coupling. After the first encouraging results with the model substrate, we did optimization of the reaction conditions and the study of substrate scope. Unfortunately we discovered that the substitution was not well tolerated and decreased the yield. Therefore this methodology could not be applied to the synthesis of the azagalanthamine. In the last approach we used previous work of our laboratory on the intramolecular Heck reaction. The reduction of the length of the linker between both cycles showed to be beneficial. We obtained promising results with this approach.

C-H functionalisation reactions aim for the selective cleavage of C-H bonds, and formation of a new carbon or heteroatom bond, often with the use of a transition metal catalyst. These reactions offer potential for functionalisation of hydrocarbons in fewer steps than conventional methods, and with high atom efficiency. They are therefore a subject of intense research in organic synthesis. Carbon-heteroatom bond forming reactions are particularly sought after, and useful in the efficient synthesis of many biologically significant groups such as oxazolidinone rings, 1,2 or 1,3 amino alcohols and amino acid analogues. An efficient, cheap and robust method for C-H amination would also be adaptable to varied syntheses of important large molecules. The necessity for complex and efficient transformations with a minimal number of steps means that heteroatom ring closures are also attractive and widely used reactions in such large molecule syntheses. The nitroso group is a highly reactive species which is normally generated in situ by oxidation of a hydroxylamine, for carbon-nitrogen bond forming reactions including the nitroso Heteroatomic Diels Alder reaction, nitroso ene reaction, and nitroso aldol reaction. Nitroso group reactions often show high stereo- and regioselectivity, and have formed key components of the syntheses of important biological molecules. Enantioselectivive protocols for the nitroso-ene reaction and, to a lesser extent, the nitroso HDA reaction, are poorly developed, however, and the range of available intramolecular nitroso reactions is limited. We aimed to establish efficient single-step intermolecular C-H amination reactions, to give 1,2 and 1,3 heteroatom functionalised molecules, and to develop the capacity for enantioselective induction in this reaction, if possible. Having synthesised a model set of unsaturated hydroxycarbamates, we identified a suitable system for nitroso generation, using a catalytic metal and stoichiometric oxidant. This resulted in in situ generation of cyclised product, with the olefin functionality intact. This cyclisation was then optimised and used to obtain a range of new heterocycles. The possibility of enantioselective induction via chiral catalysts was explored, as well as catalytic systems to increase the stereoselectivity of the reaction. In summary, a cheap, novel and reliable method was developed for formation of oxazolidinone rings from unsaturated hydroxycarbamates using an original intramolecular nitroso ene reaction, and a range of unsaturated heterocycles were synthesised in fairly good yields. Distereoselectivity of the nitroso ene cyclisations was optimised. However, to-date, we were unable to develop an enantioselective varient of the reaction. Several related aminations, as well as transformations of N-hydroxyoxazolidinone products, were also attempted during the project.

This thesis describes the development of new osmium-mediated methodologies providing novel applications through the use of a third generation of reoxidant for osmium. Chapter 1, The introduction: Summary of past and present methodologies towards the synthesis of the 1,2 amino alcohol motif. Chapter 2, Intramolecular processes: The studies of the tethered aminohydroxylation (TA) of amide and urea derivatives are being investigated. Chapter 3, Investigations towards an intermolecular process: The transposition of the TA methodology to an intermolecular process and the requirements involved are discussed. The role of acetamide is being investigated. Chapter 4, Successful transition to an intermolecular process: Amino acid derivatives became for the first time possible nitrogen sources and were efficiently employed through osmium-mediated reaction to afford interesting biological scaffolds. Chapter 5, Experimental: Full experimental procedures and characterisation of compounds are reported. References: A complete list of citations employed in the previous five chapters is provided. Appendix: Full documentation of X-ray crystal structures, key NMR spectra and HPLC traces is provided.

The work in this thesis mainly focuses on the assessment of density functional methods for computing structures and energies of organic and bioorganic molecules. Previous studies found dramatic conformational and stability changes from B3LYP to MP2 geometry optimization for some Tyr-Gly conformers. Possible reasons could be large intramolecular basis set superposition errors (BSSEs) in the MP2 calculations and the lack of dispersion in the B3LYP calculations. The fragmentation method and three kinds of rotation methods were used to investigate intramolecular BSSE. It is concluded that the rotation method cannot be used to correct intramolecular BSSE along a rotation profile. Another methodology is to employ modern density functionals. We focused on M06-L with the Tyr-Gly conformer ‘book6’. Potential energy profiles were determined by computing the energy for geometries optimized at various fixed values of a distance that controls the degree of foldedness of the structure. M06-L manifested itself as a very promising method to investigate the potential energy surface of small peptides containing aromatic residues. To predict Tyr-Gly structures, 108 potential conformers were created with a Fortran program. The geometry optimizations were done using M06-L/6-31G(d) and M05-2X/6-31+G(d). Two schemes were employed and the most stable conformers were compared to the 20 stable conformers found by B3LYP. Both schemes found 10 conformers similar to one of the B3LYP stable conformers, as well as several newly found conformers. The study of a missing B3LYP stable conformer showed that the possible reason of missing conformers may be the lack in dispersion in B3LYP theory. To study the hydration effect, we studied the conformations of neutral and zwitterionic 3-fluoro-γ-aminobutyric acid (3F-GABA) in solution using different solvation models, mainly the explicit water molecule models. Zwitterionic forms of 3F-GABA are preferred in solution. M06-2X performs better in calculating transition energy profiles than MP2.

Thesis advisor: Marc L. Snapper / Intramolecular cycloadditions of cyclobutadiene provide rapid access to rigid polycyclic systems with high strain energies and unique molecular geometries. Further functionalization of these systems followed by strain-release fragmentation provides great opportunities to construct fused-medium-ring architecture, which are very common in natural products but challenging to achieve efficiently. An intermolecular cyclopropanation/acid-mediated rearrangement strategy has been previously developed to access the 5-7 bicyclic ring systems in a highly stereospecific manner. The application of this strategy is being studied for the synthesis of a biologically interesting guaiane natural product: torilin. In a complementary fashion, an intramolecular cyclopropanation/thermal rearrangement sequence is developed to access two different molecular frameworks of 5-7-5 tricyclic ring systems. A library of functionalized 5-7-5 tricyclic ring systems can be systematically built up from the same starting material for potential future use in high-throughput screening. / Thesis (PhD) — Boston College, 2012. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Chemistry.

Neste trabalho são apresentadas a síntese e a caracterização de dois heterociclos bifuncionais do tipo benzazolil-quinolínicos, que apresentam as propriedades fotoemissoras dos benzazóis aliadas às potenciais propriedades biológicas das quinolinas. A família dos heterociclos 2-(2`-hidroxifenil)benzazólicos apresenta uma intensa emissão de fluorescência devido ao fenômeno de ESIPT (Excited State Intramolecular Proton Transfer), o que os torna uma classe de moléculas com interessantes aplicações, como a utilização em métodos diagnósticos e a produção de sondas fluorescentes. Sistemas quinolínicos, por sua vez, são utilizados no tratamento de doenças infecciosas, como as doenças virais, principalmente por serem potenciais precursores de análogos sintéticos de nucleosídeos. Para a síntese destes compostos utilizou-se a metodologia de ciclização intramolecular, inicialmente estabelecida por Gould e Jacobs. Esta ciclização foi investigada através de reação com ácido polifosfórico, de reações com fluídos de transferência de calor, de metodologia tandem e de síntese com microondas. Foram obtidos os heterociclos 3-carbetoxi-6-hidroxi-7-benzoxazolil- 4(1H)oxoquinolina e 3-carbetoxi-6-hidroxi-7- benzotiazolil- 4(1H)oxoquinolina. As condições reacionais mais apropriadas foram determinadas, sendo a metodologia sintética tandem a mais adequada. As benzazolil-quinolinas obtidas foram caracterizadas, tanto química quanto fotofisicamente. Apesar dos baixos rendimentos obtidos elas possuem grandes perspectivas de aplicação em função das propriedades fotoemissoras já observadas e das potenciais propriedades biológicas, a serem ainda avaliadas. / The synthesis and characterization of two bifunctional heterocycles belonging to the benzazolyl-quinoline class type, which present the benzazoles photoemission properties, allied to the quinolines potential biological properties, were presented. The 2-(2`- hydroxyphenyl)benzazoles heterocycles family presents an intense fluorescence emission due to an ESIPT (Excited State Intramolecular Proton Transfer) phenomenon, what makes them a molecule class with interesting applications, as its use in diagnostic methods and fluorescent probes production. Quinoline systems, in turn, are useful for infectious diseases treatment, like viral diseases, mainly because they are potential synthetic nucleoside analogues precursors. For the synthesis of these compounds the intramolecular cyclization methodology, first established by Gould and Jacobs, was used. This cyclization was investigated by poliphosphoric acid reaction, heat transfer fluids reactions, tandem methodology and microwave synthesis. The heterocycles 3-carbetoxy-6-hydroxy-7-benzoxazolyl- 4(1H)oxoquinoline and 3-carbetoxy-6-hydroxy-7-benzoxazolyl-4(1H)oxoquinoline were obtained. The best reaction conditions were determined, and the tandem synthetic methodology presented the best results. The obtained benzazolyl-quinolines were characterized both chemically and photochemically. Apart from the low yields they have great applicaton perspectives due to the photoemissing properties already observed and the potencial biological properties, to be evaluated.

No description available.

<p>Inhibitors belonging to the serpin (serine protease inhibitor) family control proteases involved in various physiological processes. All serpins have a common tertiary structure based on the dominant b-sheet A, but they have different inhibitory specificity. The specificity of a serpin is determined by the Pl-Pl’ peptide bond acting as a bait for the target protease which is made up of an exposed reactive centre loop (RCL). The serpin plasminogen activator inhibitor type-1 (PAI-1) is the main physiological inhibitor of urokinase-type and tissue-type plasminogen activators (uPA and tPA, respectively). Elevated plasma levels of PAI-l have been correlated with a higher risk of deep venous thrombosis, and PAI-1 is a risk factor for recurrent myocardial infarction. Furthermore, PAI-1 has a role in cell migration and has been suggested to regulate tumor growth and angiogenesis. PAI-1 is unique among the serpins in that it can spontaneously and rapidly convert into its latent form. This involves full insertion of the RCL into b-sheet A. </p><p>There were two partially overlapping goals for this thesis. The first was to use latent PAI-1 as model for development of a fluorescence-based method, Donor-Donor Energy Migration for intramolecular distance measurements. The second goal was to use DDEM, together with other biochemical methods, to reveal the structure of the PAI-1/uPA complex, the conformation of the RCL in active PAI-1, and molecular determinants responsible for the conversion of PAI-1 from the active to the latent form.</p><p>The use of molecular genetics for introduction of fluorescent molecules enables the use of DDEM to determine intramolecular distances in a variety of proteins. This approach can be applied to examin the overall molecular dimensions of proteins and to investigate structural changes upon interactions with specific target molecules. In this work, the accuracy of the DDEM method has been evaluated by experiments with the latent PAI-1 for which X-ray structure is known. Our data show that distances approximating the Förster radius (57±1 Å) obtained by DDEM are in good agreement (within 5.5 Å) with the distances obtained by X-ray crystallography.</p><p>The molecular details of the inhibitory mechanism of serpins and the structure of the serpin/protease complex have remained unclear. To obtain the structural insights required to discriminate between different models of serpin inhibition, we used fluorescence spectroscopy and cross-linking techniques to map sites of PAI-1/uPA interaction, and distance measurement by DDEM to triangulate the position of the uPA in the complex. The data have demonstrated clearly that in the covalent PAI-1/uPA complex, the uPA is located at the distal end of the PAI-1 molecule relative to the initial docking site. This indicates that serpin inhibition involves reactive center cleavage followed by full loop insertion, whereby the covalently linked protease is translocated from one pole of the inhibitor to the opposite one. </p><p>To search for molecular determinants that could be responsible for conversion of PAI-1 to the latent form, we studied the conformation of the RCL in active PAI-1 in solution. Intramolecular distance measurements by DDEM, the newly a developed method based on probe quenching and biochemical methods revealed that the RCL in PAI-1 is located much closer to the core of PAI-1 than has been suggested by the recently resolved X-ray structures of stable PAI-1 mutants, and it can be partially inserted. This possibly explains for the ability of PAI-1 to convert spontaneously to its latent form. </p>

Enzymes as tools in organic synthesis have provided enormous advantages. This thesis deals with the applications of enzymes in the kinetic resolutions of racemic compounds. The stereochemistry of chiral compounds and the kinetics of α/β hydrolase lipases are presented. From a practical point of view, the handling of a large number of parameters that influences the kinetic resolutions, especially enantioselectivity (E-value) are systematically described. A variety of approaches employed for raising the yields to over 50% are additionally discussed. Methods for the preparation of synthetically useful chiral building blocks were developed in this thesis. Thus, resolution of secondary alcohols bearing two vicinal stereocentres are studied. These building blocks can serve as starting materials for the synthesis of various enantiomerically pure compounds for agrochemistry, pharmaceuticals, chemical industry, and particularly for the total synthesis of pheromones. Racemic 3-substitued 2-hydroxybutane derivatives were produced in fairly high diastereomeric purities by a variety of chemical approaches, such as epimerization, metal-catalysed asymmetric addition etc. Kinetic resolution of these racemates was achieved by enzyme-catalysed reactions. Two lipases, Candida antarctica lipase B and Pseudomonas cepacia lipase were found to be useful in acylations as well as hydrolyses. In the biotransformations studied, the presence and nature of the second vicinal stereocentre in the chiral secondary alcohols investigated seemed to be important, e.g. in terms of the efficiencies of sequential kinetic resolutions, and altering the selectivities as well. / QC 20101020