Dans l’hémisphère Nord, les populations de grands herbivores ont connu ces dernières décennies des modifications environnementales majeures, liées d’une part à l’augmentation importante de leur densité, et d’autre part aux changements globaux qui affectent leur habitat (notamment réchauffement climatique, modification des activités humaines, et fragmentation de l’habitat). Mieux comprendre comment ces espèces vont adapter leurs stratégies d’histoire de vie pour répondre à ces modifications est une question majeure de l’écologie des populations, et une étape nécessaire pour pouvoir adapter leur gestion aux enjeux environnementaux et sociétaux actuels. C’est dans ce contexte que nous avons étudié quelles étaient les sources de variation des tactiques de survie et de reproduction chez trois espèces de grands herbivores de montagne (l’isard Rupicapra pyreneica, le chamois Rupicapra rupicapra, et le mouflon méditerranéen Ovis gmelini musimon × Ovis sp.). A partir de suivis longitudinaux par capture-marquage-recapture (CMR) nous nous sommes plus particulièrement focalisés sur le rôle de l’hétérogénéité individuelle latente, de la variabilité climatique et de la structuration spatiale sur les paramètres démographiques.Ce travail s’est appuyé sur l’utilisation de modèles de mélange et d’une combinaison innovante du robust-design et des modèles multi-événements pour analyser des données démographiques collectées à différentes échelles spatio-temporelles. L’hétérogénéité individuelle s’est avérée être une composante majeure de la démographie des 3 espèces étudiées, avec l’identification chez le mouflon et l’isard de femelles aux performances reproductives contrastées, et l’existence chez le chamois de différences de survie entre individus liées à la qualité de l‘habitat occupé. Ces modèles ont aussi permis de révéler une augmentation de l’investissement reproducteur en fin de vie chez les femelles de mouflon au détriment de leur survie et d’étudier chez les femelles d’isard les différentes phases de l’effort reproducteur, de la gestation au sevrage, pour mettre en évidence que seule la lactation a un coût sur la reproduction suivante. Nos résultats ont également mis en exergue le rôle prépondérant du climat hivernal et printanier sur les paramètres démographiques des 3 espèces, tout en confirmant que ces effets sont souvent spécifiques à la population et au site étudiés. Cette étude montre également que l’isard et le mouflon, bien que relativement comparables en termes de taille, de traits écologiques, et de position phylogénétique, adoptent des stratégies d’histoire de vie contrastées.Au final, nos résultats soulignent donc l’importance des études démographiques comparatives à plusieurs niveaux d’organisation (inter-espèces, inter-population, intra-population), pour mieux comprendre le devenir des espèces de grands herbivores face aux perturbations environnementales. / In Northern hemisphere, populations of large herbivores have to cope with major environmental modifications linked to the increase of their density and to global change which strongly impacts their habitat (climate change, modification of human activities and habitat fragmentation). Understanding how these species adjust their life history strategies in response to such modifications is central for population ecology and for management issues. In this context, this work aimed to identify the sources of variation of survival and reproductive tactics in 3 species of mountain ungulate (Pyrenean chamois Rupicapra pyreneica, Alpine chamois Rupicapra rupicapra, and Mediterranean mouflon Ovis gmelini musimon × Ovis sp.). Using capture-mark-recapture monitoring we specifically investigated the role of individual heterogeneity, climate change, and spatial heterogeneity in shaping vital rates.This work relied on mixture models and an innovative combination of robust-design into a multi-events framework to explore demographic data collected at different spatio-temporal scales. Fixed heterogeneity appeared as a major demographic component in the 3 studied species by highlighting in mouflon and Pyrenean chamois two groups of females with contrasted reproductive performance, and by providing evidence in chamois of among-females differences in survival rates linked to the quality of their habitat. These models allowed us to provide evidence for the terminal investment hypothesis in female mouflon and to decompose reproductive effort in females of Pyrenean chamois from gestation to weaning, to unveil that lactation only led to cost on subsequent reproduction. Our results also highlighted the major influence of winter and spring climatic conditions on demographic parameters in the 3 studied species, and confirmed the general trend that climate effects are often species- and site-specific. Our findings provided evidence that Pyrenean chamois and mouflon evolved contrasted life history strategies, although both species share strong similarities in terms of body mass, ecological traits and phylogenetic position.Finally, our work stresses the importance of conducting comparative demographic studies, based on longitudinal monitoring of marked individuals, at inter-specific, inter-population and within population levels, to better understand and predict the future of large herbivores populations in the current context of global changes.

A herbivoria por grandes mamíferos é um fator decisivo no direcionamento de comunidades vegetais, influenciando o crescimento, sobrevivência e reprodução das plantas. Os ungulados, quando exóticos, podem impactar os ecossistemas diferentemente de herbívoros nativos, gerando maiores efeitos nas comunidades de plantas. Os objetivos deste estudo foram avaliar se a presença de búfalos (densidade de 1 animal/ha) impacta as assembléias de plântulas e de arbustos numa floresta estacional semidecídua no sul do Brasil, além de inferir consequências para a manutenção da comunidade vegetal. Para isso realizamos duas abordagens no município de Sentinela do Sul: na primeira, estabelecemos um experimento de exclusão de bubalinos (duração de 14 meses) e na segunda, comparamos três áreas com presença e protegidas desses herbívoros por três e dez anos. Em ambas as abordagens, registramos as seguintes variáveis ecológicas: riqueza, altura média de plantas, cobertura vegetal, diversidade (Shannon), e biomassa. No experimento de exclusão, nenhuma das variáveis apresentou diferenças significativas perante presença e ausência de búfalos (após 14 meses). Na comparação das três áreas as comunidades vegetais mostraram diferenças qualitativas (composição de espécies) no contraste presença versus dez anos de exclusão de búfalos, e as variáveis riqueza e altura média sofreram, respectivamente, significativos incremento e decréscimo. A diferença observada para o incremento de diversidade de zero a dez anos de exclusão foi marginalmente significativa e a compactação do solo apresentou decréscimo em função do tempo de exclusão do gado. Portanto , os resultados do presente trrabalho indicam que as manchas florestais não respondem à remoção de búfalos em baixas densidades no curto prazo e, na ausência de grandes herbívoros, a floresta tende a incrementar sua complexidade via aumento de riqueza e diversidade. / Herbivory by large mammals is a key factor in plant communities, and has effects on growth, survival and reproduction of plants. Ungulates, when exotic, impact ecosystems in a different way compared to the native ones, and may have a more pronounced effect on plant communities. In this study we evaluated buffalo (1 animal/ha density) impact on the seedling and shrub assemblages in a semideciduous seasonal forest in southern Brazil and checked if such impact would affect plant community maintainability. To address these aims we conducted two studies in Sentinela do Sul County: 1. we established a buffalo exclusion experiment (during 14 months) and 2. compared three areas with presence and protected against these herbivores for three and ten years. In both studies, we measured the following ecological variables: plant cover, richness, diversity (Shannon), biomass and average height. In the exclusion experiment, any ecological variable showed significant differences between buffalo presence and absence plots. When the three areas were compared, the communities showed qualitative differences (species composition) in the contrast presence versus ten years of buffalo exclusion, and richness and average height showed, respectively, increase and decrease. The difference observed for an increase of diversity between zero and ten years exclusion was marginally significant, and soil compactation showed retraction in relation to livestock exclusion time. We conclude that forest spots don’t answer in short-term to low densities buffalo removal and, in the absence of large herbivores, the forest tends to develop its complexity by richness and diversity increase, in a long-term basis.

A herbivoria por grandes mamíferos é um fator decisivo no direcionamento de comunidades vegetais, influenciando o crescimento, sobrevivência e reprodução das plantas. Os ungulados, quando exóticos, podem impactar os ecossistemas diferentemente de herbívoros nativos, gerando maiores efeitos nas comunidades de plantas. Os objetivos deste estudo foram avaliar se a presença de búfalos (densidade de 1 animal/ha) impacta as assembléias de plântulas e de arbustos numa floresta estacional semidecídua no sul do Brasil, além de inferir consequências para a manutenção da comunidade vegetal. Para isso realizamos duas abordagens no município de Sentinela do Sul: na primeira, estabelecemos um experimento de exclusão de bubalinos (duração de 14 meses) e na segunda, comparamos três áreas com presença e protegidas desses herbívoros por três e dez anos. Em ambas as abordagens, registramos as seguintes variáveis ecológicas: riqueza, altura média de plantas, cobertura vegetal, diversidade (Shannon), e biomassa. No experimento de exclusão, nenhuma das variáveis apresentou diferenças significativas perante presença e ausência de búfalos (após 14 meses). Na comparação das três áreas as comunidades vegetais mostraram diferenças qualitativas (composição de espécies) no contraste presença versus dez anos de exclusão de búfalos, e as variáveis riqueza e altura média sofreram, respectivamente, significativos incremento e decréscimo. A diferença observada para o incremento de diversidade de zero a dez anos de exclusão foi marginalmente significativa e a compactação do solo apresentou decréscimo em função do tempo de exclusão do gado. Portanto , os resultados do presente trrabalho indicam que as manchas florestais não respondem à remoção de búfalos em baixas densidades no curto prazo e, na ausência de grandes herbívoros, a floresta tende a incrementar sua complexidade via aumento de riqueza e diversidade. / Herbivory by large mammals is a key factor in plant communities, and has effects on growth, survival and reproduction of plants. Ungulates, when exotic, impact ecosystems in a different way compared to the native ones, and may have a more pronounced effect on plant communities. In this study we evaluated buffalo (1 animal/ha density) impact on the seedling and shrub assemblages in a semideciduous seasonal forest in southern Brazil and checked if such impact would affect plant community maintainability. To address these aims we conducted two studies in Sentinela do Sul County: 1. we established a buffalo exclusion experiment (during 14 months) and 2. compared three areas with presence and protected against these herbivores for three and ten years. In both studies, we measured the following ecological variables: plant cover, richness, diversity (Shannon), biomass and average height. In the exclusion experiment, any ecological variable showed significant differences between buffalo presence and absence plots. When the three areas were compared, the communities showed qualitative differences (species composition) in the contrast presence versus ten years of buffalo exclusion, and richness and average height showed, respectively, increase and decrease. The difference observed for an increase of diversity between zero and ten years exclusion was marginally significant, and soil compactation showed retraction in relation to livestock exclusion time. We conclude that forest spots don’t answer in short-term to low densities buffalo removal and, in the absence of large herbivores, the forest tends to develop its complexity by richness and diversity increase, in a long-term basis.

A herbivoria por grandes mamíferos é um fator decisivo no direcionamento de comunidades vegetais, influenciando o crescimento, sobrevivência e reprodução das plantas. Os ungulados, quando exóticos, podem impactar os ecossistemas diferentemente de herbívoros nativos, gerando maiores efeitos nas comunidades de plantas. Os objetivos deste estudo foram avaliar se a presença de búfalos (densidade de 1 animal/ha) impacta as assembléias de plântulas e de arbustos numa floresta estacional semidecídua no sul do Brasil, além de inferir consequências para a manutenção da comunidade vegetal. Para isso realizamos duas abordagens no município de Sentinela do Sul: na primeira, estabelecemos um experimento de exclusão de bubalinos (duração de 14 meses) e na segunda, comparamos três áreas com presença e protegidas desses herbívoros por três e dez anos. Em ambas as abordagens, registramos as seguintes variáveis ecológicas: riqueza, altura média de plantas, cobertura vegetal, diversidade (Shannon), e biomassa. No experimento de exclusão, nenhuma das variáveis apresentou diferenças significativas perante presença e ausência de búfalos (após 14 meses). Na comparação das três áreas as comunidades vegetais mostraram diferenças qualitativas (composição de espécies) no contraste presença versus dez anos de exclusão de búfalos, e as variáveis riqueza e altura média sofreram, respectivamente, significativos incremento e decréscimo. A diferença observada para o incremento de diversidade de zero a dez anos de exclusão foi marginalmente significativa e a compactação do solo apresentou decréscimo em função do tempo de exclusão do gado. Portanto , os resultados do presente trrabalho indicam que as manchas florestais não respondem à remoção de búfalos em baixas densidades no curto prazo e, na ausência de grandes herbívoros, a floresta tende a incrementar sua complexidade via aumento de riqueza e diversidade. / Herbivory by large mammals is a key factor in plant communities, and has effects on growth, survival and reproduction of plants. Ungulates, when exotic, impact ecosystems in a different way compared to the native ones, and may have a more pronounced effect on plant communities. In this study we evaluated buffalo (1 animal/ha density) impact on the seedling and shrub assemblages in a semideciduous seasonal forest in southern Brazil and checked if such impact would affect plant community maintainability. To address these aims we conducted two studies in Sentinela do Sul County: 1. we established a buffalo exclusion experiment (during 14 months) and 2. compared three areas with presence and protected against these herbivores for three and ten years. In both studies, we measured the following ecological variables: plant cover, richness, diversity (Shannon), biomass and average height. In the exclusion experiment, any ecological variable showed significant differences between buffalo presence and absence plots. When the three areas were compared, the communities showed qualitative differences (species composition) in the contrast presence versus ten years of buffalo exclusion, and richness and average height showed, respectively, increase and decrease. The difference observed for an increase of diversity between zero and ten years exclusion was marginally significant, and soil compactation showed retraction in relation to livestock exclusion time. We conclude that forest spots don’t answer in short-term to low densities buffalo removal and, in the absence of large herbivores, the forest tends to develop its complexity by richness and diversity increase, in a long-term basis.

La chasse – comme la prédation naturelle - induit des réponses comportementales par les individus chassés qui cherchent ainsi à éviter ou à reduire le risque. Il est en particulier fréquent d'observer un changement dans leur utilisation de l'espace, mais l'articulation et les déterminants des réponses aux différentes échelles spatiales restent mal compris. De même, s'il a été suggéré que ces modifications comportementales pouvaient affecter en cascade la végétation, cela reste à tester. Pour combler ces lacunes, j'ai, (1) étudié, dans un paysage agricole du sud de la France, une population chassée de chevreuils et leur utilisation des milieux ouverts risqués et des couverts boisés, au cours de périodes de risque contrasté ; (2) testé, sur une population canadienne de cerfs à queue noire dépourvue de prédateurs et exempte de chasse, l'influence d'une chasse expérimentale sur le comportement des animaux et sur la végétation. J'ai montré que les chevreuils répondaient à une augmentation du risque à plusieurs échelles spatiales. Ils réduisaient leur utilisation des habitats risqués, et dans certains cas se rapprochaient des couverts, de jour ces deux réponses étant couplées au niveau individuel. Le gradient paysager d'ouverture du milieu contraignait cependant les niveaux de réponses observées et les stratégies individuelles. Au Canada, j'ai observé un évitement de la zone chassée par les cerfs les plus sensibles à la présence humaine, corrélé à une diminution de l'abroutissement pour deux des quatre espèces de plantes étudiées. J'ai intégré ces résultats dans une discussion sur l'utilisation de la chasse pour gérer les populations d'herbivores et leurs impacts sur la végétation. / Hunting – similarly to natural predation – induces behavioural responses of hunted individuals which aims at avoiding or reducing risk. Particularly, changes in space use are frequently observed, but the articulation and determinants of these changes at multiple spatial scales are still poorly understood. Also, although it has been suggested that these changes might cascade on the vegetation, this remains to be tested. To fill these gaps, I (1) studied a hunted roe deer population living in an agricultural landscape in southern France where roe deer can find open risky habitats and woody covers; and (2) tested black-tailed deer behavioural response to an experimental hunt in a predator- and hunting-free population in the Haïda-Gwaii archipelago (BC, Canada). I also investigated the possible cascading effects on the vegetation. I showed that roe deer responded to increased hunting pressure at multiple scales, reducing their use of the risky habitats and, in specific situations, their distance to the nearest cover. At day-time those two responses were coupled at the individual level. Generally, landscape openness constrained individual responses and strategies. In the hunting-for-fear experiment conducted on Haida Gwaii, I found that only the deer less-tolerant to human disturbance avoided the hunting area. A simultaneous reduction in browsing pressure on two out of the four plant species monitored was found however. I integrated these results in a general discussion on the possible role of hunting as a tool to manage abundant deer populations and their impacts on the vegetation.

Reindeer appear to have strong positive effects on plant productivity and nutrient cycling in strongly nutrient-limited ecosystems. While the direct effects of grazing on vegetation composition have been intensively studied, much less is known about the indirect effect of grazing on plant-soil interactions. This thesis investigated the indirect effects of ungulate grazing on arctic plant communities via soil nutrient availability and plant nutrient uptake. At high density, the deposition of dung alone increased plant productivity both in nutrient rich and nutrient poor tundra habitats without causing major changes in soil possesses. Plant community responses to dung addition was slow, with a delay of at least some years. By contrast, a 15N-urea tracer study revealed that nutrients from reindeer urine could be rapidly incorporated into arctic plant tissues. Soil and microbial N pools only sequestered small proportions of the tracer. This thesis therefore suggests a strong effect of dung and urine on plant productivity by directly providing nutrient-rich resources, rather than by stimulating soil microbial activities, N mineralization and ultimately increasing soil nutrient availability. Further, defoliation alone did not induce compensatory growth, but resulted in plants with higher nutrient contents. This grazing-induced increase in plant quality could drive the high N cycling in arctic secondary grasslands by providing litter of a better quality to the belowground system and thus increase organic matter decomposition and enhance soil nutrient availability. Finally, a 15N natural abundance study revealed that intense reindeer grazing influences how plants are taking up their nutrients and thus decreased plant N partitioning among coexisting plant species. Taken together these results demonstrate the central role of dung and urine and grazing-induced changes in plant quality for plant productivity. Soil nutrient concentrations alone do not reveal nutrient availability for plants since reindeer have a strong influence on how plants are taking up their nutrients. This thesis highlights that both direct and indirect effects of reindeer grazing are strong determinants of tundra ecosystem functioning. Therefore, their complex influence on the aboveground and belowground linkages should be integrated in future work on tundra ecosystem N dynamic.

L'augmentation de populations de cerfs pose d'importants problèmes écologiques et socio-économiques à l'échelle locale et mondiale. Des signes de densité-dépendance sont souvent observés, mais les cerfs restent abondants malgré l'importante dégradation du milieu qu'ils provoquent. Ceci soulève la question de l'ajustement des cerfs aux changements de milieu qu'ils créent ? Nous avons abordé cette question en recherchant comment les cerfs gèrent leur ressource alimentaire en fonction du risque de prédation. La prédation, en plus de son effet consommateur (élimination de proie), peut moduler le comportement et la physiologie des proies (effet non consommateur) qui doivent balancer le fait de se nourrir et le risque de prédation. Cette étude contribue à mieux comprendre comment les cerfs maintiennent d'abondantes populations dans des milieux qu'ils ont eux-mêmes appauvris.Notre projet s'est intéressé au cerf-à-queue-noire Sitka (Odocoileus hemionus sitkensis) sur trois îles de l'archipel d'Haïda Gwaii (B.C., Canada). Ces îles sont dépourvues des principaux prédateurs naturels du cerf (loup et puma) et ont été colonisées par les cerfs il y a plus de 60 ans. Lors de notre étude, ces îles présentaient des niveaux contrastés de nourriture et de risque de prédation : sur deux îles, les cerfs vivaient sans prédateur mais avaient fortement appauvri leur milieu (îles sans risque/pauvre). Sur la troisième île, les cerfs étaient chassés et bénéficiaient d'un sous-bois forestier partiellement restauré comme nourriture (île risquée/riche).Dans ce cadre, nous avons étudié : 1) sur quelles ressources les cerfs pouvaient maintenir de denses populations dans des milieux très abroutis ?; 2) comment le stress alimentaire ou le risque de prédation influençaient la réponse physiologique au stress des cerfs?; 3) les cerfs naïfs à la prédation ont-ils maintenu des niveaux de vigilance dans des milieux très abroutis et comment répondaient-ils à des stimuli olfactifs de prédateurs ?; et 4) comment, dans des milieux très abroutis, les cerfs naïfs à la prédation répondaient-ils à une chasse expérimentale pour faire peur et comment cela affectait la végétation ?Notre étude a montré que : 1) les chutes de feuilles de la canopée et la pousse annuelle de plantes rhizomateuses offraient une grande quantité d'énergie pour les cerfs et contribuaient au maintien de denses populations de cerfs dans des milieux appauvris ; 2) La présence de stress alimentaire ou de risque de prédation n'affectaient pas la réponse physiologique au stress des cerfs, suggérant l'existence d' ajustements comportementaux et/ou physiologiques permettant de réduire l'exposition des cerfs à ces deux stresseurs ; 3) sur les îles sans risque/pauvre, les cerfs ont maintenu la vigilance malgré 60 ans d'isolation à la prédation. En outre, les cerfs naïfs à la prédation évitaient de manger en présence d'urine de loup (dangereux) mais pas en présence d'urine d'ours (moins dangereux), suggérant que les cerfs présentaient une stratégie innée de nourrissage sensible au risque. Les cerfs restaient aussi moins longtemps aux stations d'appâtage en présence d'urine de loup mais n'augmentaient pas leur niveau de vigilance, suggérant qu'ils géraient le risque spatialement plutôt que par la vigilance ; 4) En réponse à une chasse expérimentale pour faire peur réalisée sur une des îles sans risque/pauvre, seuls les cerfs les moins tolérant à la perturbation humaines évitaient la zone chassée. Ceci souligna l'importance de la sélection des traits comportementaux induis par l'homme dans la gestion de la faune et de la flore. Nous avons aussi suivi la croissance de quatre espèces de plantes côtières à croissance rapide et avons montré que notre chasse expérimentale favorisait la croissance de la moitié d'entre elles, soulignant l'interaction complexe entre le comportement de nourrissage et les caractéristiques des plantes, ainsi que l'importance des objectifs dans le choix des outils de gestion. / In many temperate environments deer populations have been increasing, raising serious ecological and socio-economic concerns both locally and globally. Signs of density dependence are often observed in such populations, but deer abundance often remains high with regard to the dramatic degradation of the environment they have induced. This raises the question: How do deer do to adjust to the environmental changes they created? The present study addressed aspects of this question focusing on how deer manage their food resource in relation to predation risk. In addition to its consumptive effect (prey removal), predation is increasingly recognized for its non-consumptive effect on prey behavior and physiology, the importance of which is linked to the strength of the trade-off between foraging and predation risk. A better understanding on how deer manage food resource and predation risk in heavily browsed environment may thus help to better understand how deer maintain abundant populations in self-induced depleted environment.We tackled this question by studying Sitka black tailed deer (Odocoileus hemionus sitkensis) on three islands of the Haida Gwaii archipelago (B.C., Canada). These islands are devoid of the main natural predators of deer (wolves and cougars) and were colonized by deer over 60 years ago. At the time of the study, these islands presented contrasted levels of food and predation risk: on two islands, deer were predator-free but had strongly depleted their environment (safe/poor islands). On the third island, deer were culled by means of regular hunts and had access to a partially recovered forest understory in terms of food supply (risky/rich island).We considered four questions: 1) on what resources do abundant deer populations rely in heavily browsed environment?; 2) how do deer physiological stress response vary with either food stress or predation risk?; 3) do predator-naïve deer maintain anti-predator behaviors, like vigilance, in heavily browsed environments and how do they respond to predator olfactory cues?; and 4) how do predator-naïve deer respond to an experimental hunting for fear in a heavily browsed environment and how does it affect the vegetation? We showed that: 1) the subsidies from canopy litterfall and the annual growth from rhizomatous plants offered a large energy supply for deer and contributed to maintain abundant deer population in forests with depleted understory; 2) deer did not mount a physiological stress response in presence of either starvation or predation risks, and we suggested that behavioral and/or physiological adjustments allowed deer to mitigate their exposure to either stressor; 3) on safe/poor islands, deer maintained vigilance despite 60 years of isolation from predation. Predator-naïve deer avoided eating bait in presence of urine of wolf (dangerous) but not of bear (less dangerous). This suggested an innate threat-sensitive foraging strategy in deer. Deer also remained less time at the bait stations in presence of wolf urine but did not increase their vigilance levels. This suggested that deer were likely to manage risk more by space use than by vigilance; 4) In response to an experimental hunting for fear conducted on one of the safe/poor island, we showed that the deer less-tolerant to humans avoided the hunting area; The deer more-tolerant to human disturbance did not. This stressed the importance to consider the human-induced selection of behavioral traits during wildlife management. We also monitored the growth of four fast-growing coastal plant species and showed that the hunting for fear promoted the growth of half of them. This highlighted the intricate interaction among deer foraging behavior and plant characteristics and emphasized the importance of management targets in the choice of management tools. We discussed the long-terms effect of hunting as management tool for deer.

La variabilité environnementale à laquelle les individus sont constamment exposés est forte. Dans ce contexte, les conditions environnementales en début de vie sont particulièrement importantes puisqu’elles peuvent avoir des conséquences à long terme sur la performance des individus. L’objectif de cette thèse est d’améliorer notre compréhension des effets à long-terme des évènements vécus tôt dans la vie, incluant aussi bien les conditions environnementales que la croissance, sur les traits d’histoire de vie des grands mammifères herbivores. Afin de répondre à cet objectif, nous avons utilisé les suivis à long-terme de cinq populations appartenant à quatre espèces d’ongulés. Dans une première partie, nous avons montré que les conditions environnementales en début de vie peuvent influencer la trajectoire entière de croissance corporelle d’un individu. Ensuite, nous avons cherché à savoir si les effets des conditions environnementales en début de vie sur les traits d’histoire de vie à l’âge adulte représentaient des réponses adaptatives à différents environnements ou résultaient seulement de contraintes développementales dues à une restriction alimentaire. Nous avons répondu à cette question en testant notamment des hypothèses issues du domaine médical en populations sauvages / The environment to which individuals are permanently exposed varies greatly over time. The environmental conditions during early life are particularly important in this context because they can have extraordinary long-term consequences on individual performance. The main goal of this PhD thesis was to improve our understanding of the long-term effects of early-life events, including environmental conditions and growth, on life-history traits of large herbivores. In order to meet this objective, we used detailed long-term data from five populations of four species of ungulates. We highlighted that environmental conditions experienced during early life can influence the entire body growth trajectory of an individual. Then, we investigated whether the long-term effects of early environmental conditions on life-history traits represent adaptive responses to differing environments, or are only a consequence of energetic constraints on development. We aimed to address this issue by testing hypotheses issued from human medicine in wild populations

Pendant les transitions glaciaire-interglaciaires,on observe une augmentation en partie abrupte de près de 100 ppm du CO2atmosphérique, indiquant une redistribution majeure entre les réservoirs de carbone des continents, de l'océan et de l'atmosphère.Expliquer les flux de carbone associés à ces transitions est un défi scientifique, qui nécessite une meilleure compréhension du stock de carbone ‘initial’ dans la biosphère terrestre au cours de la période glaciaire. L’objectif de cette thèse est d’améliorer la compréhension du fonctionnement des écosystèmes terrestres et des stocks de carbone au cours du dernier maximum glaciaire (LGM, il y a environ21.000 ans), à travers plusieurs nouveaux développements dans le modèle global de végétation ORCHIDEE-MICT, pour améliorer la représentation de la dynamique de la végétation, la dynamique du carbone dans le sol du pergélisol et les interactions entre les grands herbivores et la végétation dans le modèle de la surface terrestre.Pour la première partie, la représentation de la dynamique de la végétation dans ORCHIDEEMICT pour les régions des moyennes et hautes latitudes, a été calibrée et évaluée avec un ensemble de données spatiales de classes de végétation, production primaire brute, et de biomasse forestière pour la période actuelle.Des améliorations sont obtenues avec la nouvelle version du modèle dans la distribution des groupes fonctionnels de végétation. Ce modèle a ensuite été appliqué pour simuler la distribution de la végétation au cours de laLGM, montrant un accord général avec les reconstructions ponctuelles basées sur des données de pollen et de macro-fossiles de plantes.Une partie du pergélisol (sols gelés en permanence) contient des sédiments épais,riches en glace et en matières organiques appelés Yedoma, qui contiennent de grandes quantités de carbone organique, et sont des reliques des stocks de carbone du Pléistocène.Ces sédiments ont été accumulés sous des climats glaciaires. Afin de simuler l'accumulation du carbone dans les dépôts de Yedoma, j’ai proposé une nouvelle paramétrisation de la sédimentation verticale dans le module de carbone dans le sol de ORCHIDEE-MICT. L'inclusion de ce processus a permis de reproduire la distribution verticale de carbone observée sur des sites de Yedoma. Une première estimation du stock de carbone dans le pergélisol au cours du LGM est obtenue, de l’ordre de ~ 1550 PgC, dont 390 ~446 PgC sous forme de Yedoma encore intacts aujourd’hui (1,3 millions de km2).Potentiellement, une plus grande surface de Yedoma pourrait être présente pendant leLGM, qui a disparue lors de la déglaciation.Pour la troisième partie, à la lumière des impacts écologiques des grands animaux, et le rôle potentiel des méga-herbivores comme une force qui a maintenu les écosystèmes steppiques pendant les périodes glaciaires, j'ai incorporé un modèle de d’herbivores dans ORCHIDEE-MICT, basé sur des équations physiologiques pour l'apport énergétique et les dépenses, le taux de natalité, et le taux de mortalité pour les grands herbivores sauvages.Le modèle a montré des résultats raisonnables de biomasse des grands herbivores en comparaison avec des observations disponibles aujourd’hui sur des réserves naturelles. Nous avons simulé un biome de prairies très étendu pendant le LGM avec une densité importante de grands herbivores. Les effets des grands herbivores sur la végétation et le cycle du carbone du LGM ont été discutés, y compris la réduction de la couverture forestière, et la plus grande productivité des prairies.Enfin, j’ai réalisé une estimation préliminaire du stock total de carbone dans le permafrost pendant le LGM, après avoir tenu compte des effets des grands herbivores et en faisant une extrapolation de l'étendue spatiale des sédiments de type Yedoma basée sur des analogues climatiques et topographiques qui sont similaires à la région de Yedoma actuelle. / During the repeated glacialinterglacialtransitions, there has been aconsistent and partly abrupt increase of nearly100 ppm in atmospheric CO2, indicating majorredistributions among the carbon reservoirs ofland, ocean and atmosphere. A comprehensiveexplanation of the carbon fluxes associatedwith the transitions is still missing, requiring abetter understanding of the potential carbonstock in terrestrial biosphere during the glacialperiod. In this thesis, I aimed to improve theunderstanding of terrestrial carbon stocks andcarbon cycle during the Last Glacial Maximum(LGM, about 21,000 years ago), through aseries of model developments to improve therepresentation of vegetation dynamics,permafrost soil carbon dynamics, andinteractions between large herbivores andvegetation in the ORCHIDEE-MICT landsurface model.For the first part, I improved theparameterization of vegetation dynamics inORCHIDEE-MICT for the northern mid- tohigh-latitude regions, which was evaluatedagainst present-day observation-based datasetsof land cover, gross primary production, andforest biomass. Significant improvements wereshown for the new model version in thedistribution of plant functional types (PFTs),including a more realistic simulation of thenorthern tree limit and of the distribution ofevergreen and deciduous conifers in the borealzone. The revised model was then applied tosimulate vegetation distribution during theLGM, showing a general agreement with thepoint-scale reconstructions based on pollen andplant macrofossil data.Among permafrost (perennially frozen) soils,the thick, ice-rich and organic-rich siltysediments called yedoma deposits hold largequantities of organic carbon, which areremnants of late-Pleistocene carbonaccumulated under glacial climates. In order tosimulate the buildup of the thick frozen carbonin yedoma deposits, I implemented asedimentation parameterization in the soilcarbon module of ORCHIDEE-MICT. Theinclusion of sedimentation allowed the modelto reproduce the vertical distribution of carbonobserved at the yedoma sites, leading toseveral-fold increase in total carbon. Simulatedpermafrost soil carbon stock during the LGMwas ~1550 PgC, among which 390~446 PgCwithin today’s known yedoma region (1.3million km2). This result was still anunderestimation since the potentially largerarea of yedoma during the LGM than todaywas not yet taken into account.For the third part, in light of the growingevidence on the ecological impacts of largeanimals, and the potential role of megaherbivoresas a driving force that maintainedthe steppe ecosystems during the glacialperiods, I incorporated a dynamic grazingmodel in ORCHIDEE-MICT, based onphysiological equations for energy intake andexpenditure, reproduction rate, and mortalityrate for wild large grazers. The model showedreasonable results of today’s grazer biomasscompared to empirical data in protected areas,and was able to produce an extensive biomewith a dominant vegetation of grass and asubstantial distribution of large grazers duringthe LGM. The effects of large grazers onvegetation and carbon cycle were discussed,including reducing tree cover, enhancinggrassland productivity, and increasing theturnover rate of vegetation living biomass.Lastly, I presented a preliminary estimation ofpotential LGM permafrost carbon stock, afteraccounting for the effects of large grazers, aswell as extrapolations for the spatial extent ofyedoma-like thick sediments based on climaticand topographic features that are similar to theknown yedoma region. Since these results werederived under LGM climate and constantsedimentation rate, a more realistic simulationwould need to consider transient climate duringthe last glacial period and sedimentation ratevariations in the next step.

This thesis is focused on the importance of large herbivore pasture for arthropod communities in temperate steppe. The study site was located in former military training area Milovice, regional biodiversity hotspot, where wild horses and aurochs were introduced as an active measure aimed at biodiversity conservation. Main goals of proposed study were to assess the role of vegetation structure and presence of grazing on beetle species composition in two trap heights, to examine suitability of flight intercept traps for monitoring arthropods of open habitats, to set the continuous arthropod monitoring program on the site and to propose a suitable model groups to assess habitat changes.