Thesis (Ph. D.)--University of Oregon, 2002. / Typescript. Includes vita and abstract. Includes bibliographical references (leaves 118-120). Also available for download via the World Wide Web; free to University of Oregon users.

This thesis investigates the topology and geometry of hyperbolic knot complements that are commensurable with other knot complements. In chapter 3, we provide an infinite family examples of hyperbolic knot complements commensurable with exactly two other knot complements. In chapter 4, we exhibit an obstruction to knot complements admitting exceptional surgeries in conjunction with hidden symmetries. Finally, in chapter 5, we discuss the role of surfaces embedded in 3-orbifolds as it relates to hidden symmetries. / text

The Intrinsic Low-Dimensional Manifold (ILDM) has been adopted as an approximation to the slow manifold representing the long-term evolution of a non-linear chemical system. The computation of the slow manifold simplifies the model without sacrificing accuracy because the trajectories are rapidly attracted to it. The ILDM has been shown to be a highly accurate approximation to the manifold when the curvature of the manifold is not too large. An efficient method of calculating an approximation to the slow manifold which may be equivalent to the ILDM is presented. This method, called Functional Equation Truncation (FET). is based on the assumption that the local curvature of the manifold is negligible, resulting in a locally linearized system. This system takes the form of a set of algebraic equations which can be solved for given values of the independent variables. Two-dimensional and three-dimensional models are used to test this method. The approximations to onedimensional slow manifolds computed by FET are quite close to the corresponding ILDMs and those for two-dimensional ones seem to differ from their ILDM counterparts. / vii, 61 leaves ; 29 cm.

Thesis (M.S.)--Boise State University, 2010. / Includes abstract. Includes bibliographical references (leaf 55).

Thesis (M.S.)--Boise State University, 2010. / Title from t.p. of PDF file (viewed July 30, 2010). Includes abstract. Includes bibliographical references (leaf 55).

Thesis advisor: Julia Elisenda Grigsby / In 1999, Khovanov constructed a combinatorial categorification of the Jones polynomial. Since then there has been a question of to what extent the topology of a link is reflected in his homology theory and how Khovanov homology can be used for topological applications. This dissertation compiles some of the authors contributions to these avenues of mathematical inquiry. In the first chapter, we prove that for a fixed braid index there are only finitely many possible shapes of the annular Rasmussen $d_t$ invariant of braid closures. Focusing on the case of 3-braids, we compute the Rasmussen $s$-invariant and the annular Rasmussen $d_t$ invariant of all 3-braid closures. As a corollary, we show that the vanishing/non-vanishing of the $\psi$ invariant is entirely determined by the $s$-invariant and the self-linking number for 3-braid closures. In the second chapter, we show if $L$ is any link in $S^3$ whose Khovanov homology is isomorphic to the Khovanov homology of $T(2,6)$ then $L$ is isotopic to $T(2,6)$. We show this for unreduced Khovanov homology with $\mathbb{Z}$ coefficients. Finally in the third chapter, we exhibit infinite families of annular links for which the maximum non-zero annular Khovanov grading grows infinitely large but the maximum non-zero annular Floer-theoretic gradings are bounded. We also show this phenomenon exists at the decategorified level for some of the infinite families. Our computations provide further evidence for the wrapping conjecture of Hoste-Przytycki and its categorified analogue. Additionally, we show that certain satellite operations cannot be used to construct counterexamples to the categorified wrapping conjecture. / Thesis (PhD) — Boston College, 2022. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Mathematics.

Embedded contact homology is an invariant of closed oriented contact 3-manifolds first defined by Hutchings, and is isomorphic to both Heegard Floer homology (by the work of Colin, Ghiggini and Honda) and Seiberg-Witten Floer cohomology (by the work of Taubes). The embedded contact chain complex is defined by counting closed orbits of the Reeb vector field and certain pseudoholomorphic curves in the symplectization of the manifold. As part of their proof that ECH=HF, Colin, Ghiggini and Honda showed that if the contact form is suitably adapted to an open book decomposition of the manifold, then embedded contact homology can be computed by considering only orbits and differentials in the complement of the binding of the open book; this fact was then in turn used to define a knot version of embedded contact homology, denoted ECK, where the (null-homologous) knot in question is given by the binding. In this thesis we start by generalizing these results to the case of rational open book decompositions, allowing us to define ECK for rationally null-homologous knots. In its most general form this is a bi-filtered chain complex whose homology yields ECH of the closed manifold. There is also a hat version of ECK in this situation which is equipped with an Alexander grading equivalent to that in the Heegaard Floer setting, categorifies the Alexander polynomial, and is conjecturally isomorphic to the hat version of knot Floer homology. The main result of this thesis is a large negative $n$-surgery formula for ECK. Namely, we start with an (integral) open book decomposition of a manifold with binding $K$ and compute, for all $n$ greater than or equal to twice the genus of $K$, ECK of the knot $K(-n)$ obtained by performing ($-n$)-surgery on $K$. This formula agrees with Hedden's large $n$-surgery formula for HFK, providing supporting evidence towards the conjectured equivalence between the two theories. Along we the way, we also prove that ECK is, in many cases, independent of the choices made to define it, namely the almost complex structure on the symplectization and the homotopy type of the contact form. We also prove that, in the case of integral open book decompositions, the hat version of ECK is supported in Alexander gradings less than or equal to twice the genus of the knot.

This thesis presents an algorithm for producing 4–manifold triangulations with boundary an arbitrary orientable, closed, triangulated 3–manifold. The research is an extension of Costantino and Thurston’s work on determining upper bounds on the number of 4–dimensional simplices necessary to construct such a triangulation. Our first step in this bordism construction is the geometric partitioning of an initial 3–manifold M using smooth singularity theory. This partition provides handle attachment sites on the 4–manifold Mx[0,1] and the ensuing handle attachments eliminate one of the boundary components of Mx[0,1], yielding a 4-manifold with boundary exactly M. We first present the construction in the smooth case before extending the smooth singularity theory to triangulated 3–manifolds. / Graduate

Le résultat principal est une caractérisation homotopique des orbifolds de dimension 3 qui sont fibrés de Seifert : si O est un orbifold de dimension 3 fermé, orientable et petit dont le groupe fondamental admet un sous-groupe infini cyclique normal, alors O est de Seifert. Ce théorème généralise un résultat de Scott, Mess, Tukia, Gabai et Casson-Jungreis pour les variétés. Il repose sur une caractérisation des groupes de surfaces virtuels comme groupes quasi-isométriques à un plan riemannien complet. D'autres résultats sur les quasi-isométries entre groupes et surfaces sont obtenus.

Berge introduced knots that are primitive/primitive with respect to the standard genus 2 Heegaard surface, F, for the 3-sphere; surgery on such knots at the surface slope yields a lens space. Later Dean described a similar class of knots that are primitive/Seifert with respect to F; surgery on these knots at the surface slope yields a Seifert fibered space. The examples Dean worked with are among the twisted torus knots. In Chapter 3, we show that a given knot can have distinct primitive/Seifert representatives with the same surface slope. In Chapter 4, we show that a knot can also have a primitive/primitive and a primitive/Seifert representative that share the same surface slope. In Section 5.2, we show that these two results are part of the same phenomenon, the proof of which arises from the proof that a specific class of twisted torus knots are fibered, demonstrated in Section 5.1. / text