New Zealand is an isolated island nation and more than 95% of its commodities are imported by ship, making New Zealand particularly vulnerable to marine bioinvasion. Its marine biota and ecosystem are unique with numerous endemic organisms, and it is a biodiversity hotspot of global significance. The objective of this study was to integrate invasive theory with phylogeographic studies on a native ascidian. This study was motivated by the introduction of an invasive ascidian, Styela clava to New Zealand. To date, S. clava’s cytochrome oxidase I (COI) data indicate limited sharing of haplotypes between the ports of Lyttelton and Auckland, and areas within Hauraki Gulf. The connectivity between these disparate sites may be a consequence either of common overseas origins via international shipping or local vectoring within New Zealand by coastal shipping. In this thesis I have examined the phylogeographic relationships among populations of an endemic ascidian, Cnemidocarpa nisiotis, to attempt to gauge the likely role that local vectoring plays in the movement of ascidians and other species among New Zealand ports. This study also provides the first population genetic information on a native New Zealand ascidian An endemic New Zealand ascidian was chosen as the study species because the use of an endemic species excludes or at least reduces the possibility of external input from overseas sites con-founding any patterns observed in the data. Furthermore, by excluding external input, the pattern of genetic diversity observed in this species might enable us to determine if local shipping pathways are homogenising C. nisiotis populations. C. nisiotis individuals were collected inside and outside of ports and marinas around Haruaki Gulf, Wellington, Lyttelton, and Dunedin harbours. Each individual were dissected and morphologically identified. Morphological identification of C. nisiotis matched type specimen (Chapter 2). However, preliminary results with COI haplotype network revealed three lineages (A, B and C) and such was the level of differences among these lineages raised the question of the possibility of a cryptic species. This 3 hypothesis was further investigated with phylogenetic analysis using both COI and 18S ribosomal DNA sequence data. Phylogeographic analysis of C. nisiotis COI molecular data demonstrated no significant population genetic structure, with a single common haplotype shared between the North and South islands (Chapter 4). Sharing of haplotypes was also evident between harbours in the South Island and within sites where population samples from inside ports, marinas, and natural habitats were not significantly different from each other. The lack of difference between the North and South Island for this species was surprising given that it was believed to have limited dispersal ability in the absence of anthropogenic movement. However, C. nisiotis displays a star-like phylogeny indicative of a selective sweep, population bottleneck or founder event followed by a population range expansion, thus the lack of difference between islands may be a consequence of too little evolutionary time having passed since the populations shared a common origin for differentiation to have occurred.

New Zealand is an isolated island nation and more than 95% of its commodities are imported by ship, making New Zealand particularly vulnerable to marine bioinvasion. Its marine biota and ecosystem are unique with numerous endemic organisms, and it is a biodiversity hotspot of global significance. The objective of this study was to integrate invasive theory with phylogeographic studies on a native ascidian. This study was motivated by the introduction of an invasive ascidian, Styela clava to New Zealand. To date, S. clava’s cytochrome oxidase I (COI) data indicate limited sharing of haplotypes between the ports of Lyttelton and Auckland, and areas within Hauraki Gulf. The connectivity between these disparate sites may be a consequence either of common overseas origins via international shipping or local vectoring within New Zealand by coastal shipping. In this thesis I have examined the phylogeographic relationships among populations of an endemic ascidian, Cnemidocarpa nisiotis, to attempt to gauge the likely role that local vectoring plays in the movement of ascidians and other species among New Zealand ports. This study also provides the first population genetic information on a native New Zealand ascidian An endemic New Zealand ascidian was chosen as the study species because the use of an endemic species excludes or at least reduces the possibility of external input from overseas sites con-founding any patterns observed in the data. Furthermore, by excluding external input, the pattern of genetic diversity observed in this species might enable us to determine if local shipping pathways are homogenising C. nisiotis populations. C. nisiotis individuals were collected inside and outside of ports and marinas around Haruaki Gulf, Wellington, Lyttelton, and Dunedin harbours. Each individual were dissected and morphologically identified. Morphological identification of C. nisiotis matched type specimen (Chapter 2). However, preliminary results with COI haplotype network revealed three lineages (A, B and C) and such was the level of differences among these lineages raised the question of the possibility of a cryptic species. This 3 hypothesis was further investigated with phylogenetic analysis using both COI and 18S ribosomal DNA sequence data. Phylogeographic analysis of C. nisiotis COI molecular data demonstrated no significant population genetic structure, with a single common haplotype shared between the North and South islands (Chapter 4). Sharing of haplotypes was also evident between harbours in the South Island and within sites where population samples from inside ports, marinas, and natural habitats were not significantly different from each other. The lack of difference between the North and South Island for this species was surprising given that it was believed to have limited dispersal ability in the absence of anthropogenic movement. However, C. nisiotis displays a star-like phylogeny indicative of a selective sweep, population bottleneck or founder event followed by a population range expansion, thus the lack of difference between islands may be a consequence of too little evolutionary time having passed since the populations shared a common origin for differentiation to have occurred.

[pt] Os hidrocarbonetos policíclicos aromáticos (HPAs) de origem antrópica representam uma classe de contaminantes de relevância ambiental por serem derivados de múltiplas fontes petrogénicas e/ou pirolíticas e por apresentarem efeitos tóxicos e carcinogênicos. Quando encontrados em pescados de consumo comercial, podem apresentar um risco adicional para a saúde humana. A análise de HPAs em biota é um desafio analítico, devido à complexidade da matriz e aos níveis baixos de concentração que representam risco para o consumo de pescados. Esse trabalho tem como objetivo otimizar e validar o método QuEChERS para análise de HPAs em tecidos biológicos como uma alternativa aos métodos convencionais. O método QuEChERS apresenta características importantes para a Química Verde, ou seja, reduz o consumo excessivo de solventes, reagentes, quantidade de amostra, tempo, entre outros fatores que diminuem o impacto ambiental. Os parâmetros que afetam a eficiência do método foram estudados e concluiu-se que a etapa de purificação constituída por Z-sep+ com uma coluna fina de sílica e alumina apresentou melhores condições de purificação do extrato. A determinação dos compostos por cromatografia a gás acoplada à espectrometria de massas (GC-MS) nos forneceu resultados com alta resolução, seletividade e detectibilidade. A linearidade e sensibilidade do método apresentou valores maiores que 0,990 para todos os HPAs, numa faixa de concentração de 1 ng mL-1 a 50 ng mL-1 no extrato final; limites de detecção e quantificação nos intervalos de 0,377 a 7,45 ng g-1 e 1,13 a 22,36 ng g-1. Os percentuais de recuperação do método ficaram na faixa de 70 a 130 porcento. O procedimento validado permite quantificar HPAs em biota marinha de forma rápida, a baixo custo, livre de interferentes na análise instrumental por GC-MS e em níveis de quantificação que permitem avaliar a qualidade de pescados para consumo humano segundo padrões internacionais. / [en] Polycyclic aromatic hydrocarbons (PAHs) of anthropogenic origin represent a class of contaminants of environmental relevance because they are derived from multiple petrogenic and/or pyrolytic sources and because they have toxic and carcinogenic effects. When found in commercially relevant fish, they can pose an additional risk to human health. The analysis of HPAs in biota is an analytical challenge, due to the complexity of the matrix and the low levels of concentration that pose a risk to fish consumption. This work aims to optimize and validate the QuEChERS method for analysis of PAHs in biological tissues as an alternative to conventional. The QuEChERS method presenting important characteristics for Green Chemistry, that is, reducing the excessive consumption of solvents, reagents, sample quantity, time, among other factors that reduce the environmental impact. The parameters that affect the efficiency of the method were studied and it was concluded that the purification step consisting of Z-sep+ with a thin column of silica and alumina presented better conditions for extract purification. The determination of compounds by gas chromatography coupled with mass spectrometry (GC-MS) provided us with results with high resolution, selectivity and detectability. The linearity and sensitivity of the method presented values greater than 0.990 for all PAHs, in a concentration range from 1 ng mL-1 to 50 ng mL-1 in the final extract; limits of detection and quantification in the ranges of 0.377 to 7.45 ng g -1 and 1.13 to 22.36 ng g -1. The method s recovery percentages ranged from 70 to 130 percent. The validated procedure allows quantifying PAHs in marine biota quickly, at low cost, free from interferences in the instrumental analysis by GC-MS and at quantification levels that allow the quality of fish for human consumption to be assessed according to international standards.

Algumas ilhas oceânicas como o Arquipélago de São Pedro e São Paulo podem ser consideradas áreas remotas e preservadas devido a sua distância do continente. Entretanto, essas regiões não estão isentas da influência de agentes antrópicos oriundos das regiões costeiras, como é o caso dos poluentes orgânicos persistentes (POPs). A presente proposta visou determinar a ocorrência e distribuição de POPs na biota marinha, do Arquipélago de São Pedro e São Paulo. As extrações das amostras foram realizadas em micro-ondas e os pesticidas organoclorados e os PCBs/PBDEs foram analisados respectivamente por cromatografia a gás com detecção por captura de elétrons e espectrometria de massas. Os compostos predominantes foram os PCBs e os DDTs que apresentaram, respectivamente, as concentrações máximas de: 127,7 e 34,37 ng g-1 para Exocoetus volitans (Peixe-voador), 98,15 e 8,89 ng g-1 para Sula leucogaster (Atobá-marrom) e 90,5 e 18,86 ng g-1 Grapsus grapsus (Aratu). Os baixos valores dos contaminantes sugerem um relativo grau de isolamento e preservação, porém a ocorrência e o perfil de distribuição dos PCBs sustenta a hipótese de que a principal fonte de contaminação em áreas remotas é o transporte atmosférico de longa distância, e demonstra a ubiquidade desses poluentes no ambiente marinho. / Some oceanic islands, such as São Pedro e São Paulo Archipelago may be considered remote areas and preserved due to its distance from the mainland. However, these areas are not exempt from the influence of anthropogenic agents from coastal regions, such as persistent organic pollutants (POPs). This proposal aimed to determine the occurrence and distribution of POPs in marine biota of São Pedro e São Paulo Archipelago. Samples extractions were performed with microwave and organochlorine pesticides and PCBs/PBDES was respectively analysed by gas chromatography with electron capture detection and mass spectrometry. The predominant compounds were PCBs and DDTs that presented, respectively, the maximum concentrations 127.7 and 34.37 ng g-1 to Exocoetus volitans (Flying fish), 98.15 and 8.89 ng g-1 to Sula leucogaster (Brown Booby) and 90.5 and 18.86 ng g-1 to Grapsus grapsus (Sally Lightfoot crab). The low levels of contaminants suggest a relative degree of isolation and preservation, but the occurrence and distribution profiles of PCBs supports the hypothesis that the main source of contamination in remote areas is long range atmospheric transport, and demonstrates the ubiquity of those pollutants in the marine environment.

Algumas ilhas oceânicas como o Arquipélago de São Pedro e São Paulo podem ser consideradas áreas remotas e preservadas devido a sua distância do continente. Entretanto, essas regiões não estão isentas da influência de agentes antrópicos oriundos das regiões costeiras, como é o caso dos poluentes orgânicos persistentes (POPs). A presente proposta visou determinar a ocorrência e distribuição de POPs na biota marinha, do Arquipélago de São Pedro e São Paulo. As extrações das amostras foram realizadas em micro-ondas e os pesticidas organoclorados e os PCBs/PBDEs foram analisados respectivamente por cromatografia a gás com detecção por captura de elétrons e espectrometria de massas. Os compostos predominantes foram os PCBs e os DDTs que apresentaram, respectivamente, as concentrações máximas de: 127,7 e 34,37 ng g-1 para Exocoetus volitans (Peixe-voador), 98,15 e 8,89 ng g-1 para Sula leucogaster (Atobá-marrom) e 90,5 e 18,86 ng g-1 Grapsus grapsus (Aratu). Os baixos valores dos contaminantes sugerem um relativo grau de isolamento e preservação, porém a ocorrência e o perfil de distribuição dos PCBs sustenta a hipótese de que a principal fonte de contaminação em áreas remotas é o transporte atmosférico de longa distância, e demonstra a ubiquidade desses poluentes no ambiente marinho. / Some oceanic islands, such as São Pedro e São Paulo Archipelago may be considered remote areas and preserved due to its distance from the mainland. However, these areas are not exempt from the influence of anthropogenic agents from coastal regions, such as persistent organic pollutants (POPs). This proposal aimed to determine the occurrence and distribution of POPs in marine biota of São Pedro e São Paulo Archipelago. Samples extractions were performed with microwave and organochlorine pesticides and PCBs/PBDES was respectively analysed by gas chromatography with electron capture detection and mass spectrometry. The predominant compounds were PCBs and DDTs that presented, respectively, the maximum concentrations 127.7 and 34.37 ng g-1 to Exocoetus volitans (Flying fish), 98.15 and 8.89 ng g-1 to Sula leucogaster (Brown Booby) and 90.5 and 18.86 ng g-1 to Grapsus grapsus (Sally Lightfoot crab). The low levels of contaminants suggest a relative degree of isolation and preservation, but the occurrence and distribution profiles of PCBs supports the hypothesis that the main source of contamination in remote areas is long range atmospheric transport, and demonstrates the ubiquity of those pollutants in the marine environment.

Marine aerosols have attracted increasing attention over the past 15 years because of their potential significance for global climate modelling. The size distribution of these aerosols extends from super-micrometer sea salt mode particles down through 150 nm accumulation mode particles, 40 nm Aitken mode particles and nucleation mode particles which extend from 25 nm right down to clusters of a few molecules. The process by which the submicrometer modes form and grow and their composition have remained topics of debate throughout this time in large part because of the difficulties associated with determining their composition and relating it to proposed models of the formation process. The work compared the modality of marine aerosol influencing the South-east-Queensland region with that of other environmental aerosols in the region. The aerosol was found to be consistent with marine aerosols observed elsewhere with concentrations below 1000 cm-3 and frequently exhibiting the distinct bimodal structure associated with cloud processing, consisting of an Aitken mode at approximately 40 nm, an accumulation mode in the range 100-200 nm and a coarse mode attributed to sea salt between 600 and 1200 nm. This work included the development of two new techniques for aerosol research. The first technique measures aerosol density using a combination of aerosol size distribution and gravimetric mass concentration measurements. This technique was used to measure the density of a number of submicrometer aerosols including laboratory generated NaCl aerosol and ambient aerosol. The densities for the laboratory generated aerosols were found to be similar to those for the bulk materials used to produce them. The technique, extended to super-micrometer particle size range may find application in ambient aerosol research where it could be used to discriminate between periods when the aerosol is dominated by NaCl and periods when the density is more representative of crustal material or sulfates. The technique may also prove useful in laboratory or industrial settings for investigating particle density or in case where the composition is known, morphology and porosity. The second technique developed, integrates the existing physicochemical techniques of volatilisation and hygroscopic growth analysis to investigate particle composition in terms of both the volatilisation temperatures of the chemical constituents and their contribution to particle hygroscopic behaviour. The resulting volatilisation and humidification tandem differential mobility analyser or VH-TDMA, has proven to be a valuable research tool which is being used in ongoing research. Findings of investigations relating the composition of the submicrometer marine aerosol modes to candidate models for their formation are presented. Sea salt was not found in the numerically dominant particle type in coastal nucleation mode or marine Aitken and accumulation modes examined on the Southeast Queensland coast during periods where back trajectories indicated marine origin. The work suggests that all three submicrometer modes contain the same four volatile chemical species and an insoluble non-volatile residue. The volatility and hygroscopic behaviours of the particles are consistent with a composition consisting of a core composed of sulfuric acid, ammonium sulfate and an iodine oxide coated with a volatile organic compound. The volume fraction of the sulfuric acid like species in the particles shows a strong dependence on particle size.