Presented diploma thesis is focused on analysis of phenolic compounds in various types of beers. The aim of this work was to find possible differences among several types of beers and also between Czech beers and beers of foreign production. Theoretical part contains detailed description of beer technology, review of important analytical methods for determination of phenolic compounds and total antioxidant activity. The main attention is focused on instrumental technique LC/MS. In the experimental part values of total phenolics and total flavonoids and results of antioxidant status in analyzed beers were determined spectrophotometrically. Basic brewing characteristics were determined by pycnometry. On-line liquid chromatography with photo diode array detection and mass spectrometry detection was used for identification and quantification of individual phenolic compounds. Spectrophotometric analysis of phenolic and flavonoid levels seems to be less specific, that is consistent with findings in accessible literature. It was proved, that iso- bitter compounds exhibit about 65.44 – 90.93 % of the total bitter substances. These components are responsible for the main part of beer bitterness. The HPLC/PDA/ESI-MS was necessary to use for determination of characteristic phenolic compounds in individual types of beer. Within our measurement three columns were tested, the most favourable results were obtained using the column Restek C18. When compared with foreing beers, in Czech beers higher level of majority of phenolic compounds was detected and specific distribution of individual derivatives was found as well.

Analytical chemistry has developed throughout time to meet current needs. At present, the interest in biorefinery is growing, due to environmental awareness and the depletion of fossil resources. Biomass from agricultural and forestry industries has proven to be excellent raw material for different processes. Biorefinering valuable species such as bioactive species from biomass, without compromising the primary process of the biomass is highly desirable. Pressurised fluid extraction (PFE) using water and ethanol as a solvent was developed for extracting betulin from birch (Betula pendula) bark. Apart from betulin, stilbene glucosides such as astringin, isorhapontin and picied were also extracted from spruce (Picea abies) using PFE. PFE is an advanced technique that extracts at temperatures above the solvent’s atmospheric boiling point. The applied pressure in PFE is mainly to maintain the liquid state of the extraction solvent. Parameters such as type of solvent, temperature, and time affect the extraction selectivity and efficiency. Therefore it is necessary to comprehend these parameters in order to optimise extraction. The DPPH (1,1-diphenyl-2-picrylhydrazyl) assay was used to determine the antioxidant capacity and activity of the obtained bioactive species. The results showed high antioxidant capacity in bioactive species that were extracted at an elevated temperature, 180°C. Extraction and degradation occur simultaneously during the extraction. Hence, it is crucial to separate these two processes in order to obtain the actual value. An online hyphenated system of chromatographic separation electrochemical mass spectrometric detection was developed (LC-DAD-ECD-MS/MS). The electrochemical detector facilitates real-time monitoring of the antioxidant capacity and activity of each antioxidant and its oxidation products. This developed LC-DAD-ECD-MS/MS method enabled rapid screening of antioxidants and created a fingerprint map for their oxidation products. Characterisation and molecular elucidation of bioactive species were also performed. Degradation of bioactive species was investigated with the said online system and birch bark extract was compared with birch bark extracts that were hydrothermally treated. The obtained results showed some degradation of antioxidants at 180°C. In summary, the aim of this thesis was to develop analytical methods integrated with sustainable chemistry for extraction of bioactive species in biomass from the forestry industry. A novel online system using selective and sensitive detectors such as diode-array, electrochemical, and tandem mass spectrometry was developed to rapidly determine the antioxidant capacity and activity of antioxidants. Furthermore, tandem mass spectrometry enables identification of unknown bioactive species without the need of reference samples. / Felaktigt tryckt som Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 719

Quantitative Untersuchungen krankheitsspezifischer oder krankheitsassoziierter metabolischer Signaturen in humanen Körperflüssigkeiten („Clinical Metabolomics“) haben zum Ziel neue Ansätze für diagnostische oder therapeutische Konzepte zu entwickeln. Die simultane quantitative Analytik von Aminosäuren (AS) und Acylcarnitinen (AC) mittels Tandem-Massenspektrometrie (MS/MS) ermöglicht die Erfassung wichtiger Stoffwechselwege des humanen Metabolismus. Hierzu zählen der Stoffwechsel der ketogenen AS, des Harnstoffzyklus oder der β-Oxidation langkettiger Fettsäuren. Allerdings wird die Konzentration der verschiedenen metabolischen Parameter in humanen Körperflüssigkeiten durch eine Vielzahl präanalytischer in vitro Störfaktoren und in vivo Einflussgrößen beeinflusst. Diese können zu signifikanten Veränderungen der Laborergebnisse führen. Im Rahmen meiner Promotionsarbeit wurden in vitro Störfaktoren (Probenmaterial, Lagerung u. a.) und in vivo Einflussgrößen (Ernährung, physische Aktivität) untersucht und ein standardisiertes Präanalytik-Protokoll entwickelt. Dazu wurden pro Probe 3 µL Trockenblut (TB), 10 µL Serum oder Plasma nach Butylierung mittels Elektrospray-Ionisations-MS/MS analysiert und jeweils 26 AS und 35 AC in 1,5 Minuten simultan bestimmt. Als Ergebnis der zahlreichen systematischen Präanalytik-Untersuchungen konnten signifikante Konzentrationsunterschiede der Metabolite zwischen kapillärer und venöser Blutentnahme sowie in Abhängigkeit des Hämatokrits gefunden werden. Im Vergleich zu Serum und antikoaguliertem Plasma (EDTA, Citrat, Heparin) waren die Konzentrationen der langkettigen AC im TB 5-fach höher. Nahrungsaufnahme und körperliche Aktivität führten ebenfalls zu signifikanten Veränderungen der AS- und AC-Konzentrationen. Durch Optimierung des Probenaufarbeitungsprotokolls konnte die Variabilität zwischen den Messtagen für 17 AS und 6 AC auf < 20 % gesenkt werden. Die Ergebnisse meiner Promotionsarbeit unterstreichen den Einfluss präanalytischer Faktoren auf die Metabolomanalytik. Durch Etablierung und Einhaltung standardisierter präanalytischer Protokolle kann die präanalytische Varianz der Ergebnisse deutlich verringert werden. Sie stellen somit eine wichtige Voraussetzung für eine qualitativ hochwertige Metabolomanalytik im Rahmen klinischer Studien zur Identifizierung neuer Biomarker dar.

In the works presented here, we studied molecular changes associated with drug resistance in human mantle cell lymphoma (MCL) cells using proteomics. Our analyses allowed us to identify causal and/or secondary changes in protein expression associated with the development of resistance to the experimental drug TRAIL and the clinically used antimetabolites cytarabine and fludarabine. Resistance of MCL cells to the recombinant proapoptotic cytokine TRAIL was associated with downregulation of key enzymes of purine metabolism. This pathway potentially represents a molecular "weakness", which could be used as a therapeutic target for selective elimination of such resistant cells. Resistance to the pyrimidine analog drug cytarabine was associated with cross-resistance to other antinucleosides. Proteomic and transcriptomic analyses showed pronounced downregulation of deoxycytidine kinase (dCK), which activates both purine and pyrimidine antinucleosides. This change explains the cross-resistance and is the causal mechanism of resistance to cytarabine. Our observations suggest that MCL patients, who do not respond to cytarabine-based therapy, should be treated with non-nucleoside drugs. MCL cells resistant to purine-derived antinucleoside fludarabine were cross-resistant to all tested antinucleosides and...

Colistin is a polypeptide antibiotic used as a "last resort" effective against Gram-negative bacteria. However, increase in its consumption in veterinary medicine in the last 30 years has led to the development of bacterial resistance even to colistin. The application of slurry to soil containing unmetabolized colistin and resistant bacteria poses a risk, because the resistance of bacteria to colistin can be further developed and spread to other components of the environment. Therefore, this work was focused on the creation and optimization of extraction and analytical methods for soil samples containing colistin. Colistin was detected by liquid chromatography in connection with mass spectrometry (HPLC/MS and UPLC/MS/MS). Many extraction solutions have been tested in connection with ultrasonic extraction and purification on various SPE columns, yet colistin has not been successfully extracted from the soil. Colistin was successfully detected only in the slurry extract. The reason why colistin was not detected in soil extracts could be the sorption of colistin on soil organic matter or the formation of complexes of colistin with humic substances.

Quantitative Untersuchungen krankheitsspezifischer oder krankheitsassoziierter metabolischer Signaturen in humanen Körperflüssigkeiten („Clinical Metabolomics“) haben zum Ziel neue Ansätze für diagnostische oder therapeutische Konzepte zu entwickeln. Die simultane quantitative Analytik von Aminosäuren (AS) und Acylcarnitinen (AC) mittels Tandem-Massenspektrometrie (MS/MS) ermöglicht die Erfassung wichtiger Stoffwechselwege des humanen Metabolismus. Hierzu zählen der Stoffwechsel der ketogenen AS, des Harnstoffzyklus oder der β-Oxidation langkettiger Fettsäuren. Allerdings wird die Konzentration der verschiedenen metabolischen Parameter in humanen Körperflüssigkeiten durch eine Vielzahl präanalytischer in vitro Störfaktoren und in vivo Einflussgrößen beeinflusst. Diese können zu signifikanten Veränderungen der Laborergebnisse führen. Im Rahmen meiner Promotionsarbeit wurden in vitro Störfaktoren (Probenmaterial, Lagerung u. a.) und in vivo Einflussgrößen (Ernährung, physische Aktivität) untersucht und ein standardisiertes Präanalytik-Protokoll entwickelt. Dazu wurden pro Probe 3 µL Trockenblut (TB), 10 µL Serum oder Plasma nach Butylierung mittels Elektrospray-Ionisations-MS/MS analysiert und jeweils 26 AS und 35 AC in 1,5 Minuten simultan bestimmt. Als Ergebnis der zahlreichen systematischen Präanalytik-Untersuchungen konnten signifikante Konzentrationsunterschiede der Metabolite zwischen kapillärer und venöser Blutentnahme sowie in Abhängigkeit des Hämatokrits gefunden werden. Im Vergleich zu Serum und antikoaguliertem Plasma (EDTA, Citrat, Heparin) waren die Konzentrationen der langkettigen AC im TB 5-fach höher. Nahrungsaufnahme und körperliche Aktivität führten ebenfalls zu signifikanten Veränderungen der AS- und AC-Konzentrationen. Durch Optimierung des Probenaufarbeitungsprotokolls konnte die Variabilität zwischen den Messtagen für 17 AS und 6 AC auf < 20 % gesenkt werden. Die Ergebnisse meiner Promotionsarbeit unterstreichen den Einfluss präanalytischer Faktoren auf die Metabolomanalytik. Durch Etablierung und Einhaltung standardisierter präanalytischer Protokolle kann die präanalytische Varianz der Ergebnisse deutlich verringert werden. Sie stellen somit eine wichtige Voraussetzung für eine qualitativ hochwertige Metabolomanalytik im Rahmen klinischer Studien zur Identifizierung neuer Biomarker dar.

This PhD thesis provides a commented set of four publications. These publications are focused on capillary electrophoresis, liquid chromatography, and UV/Vis spectrometry used to study complexes of rhenium with aromatic ligands. The methods of mass spectrometry with soft ionization techniques, 1 H and 13 C nuclear magnetic resonance, and infrared spectrometry were used for structural characterization of the individual complexes. The complexes were synthetized in reactions of the rhenium precursor tetrabutylammonium tetrachlorooxorhenate with the corresponding ligand under both aerobic and anaerobic conditions. In the course of the research, it was revealed that the prepared complexes (with Re in the oxidation number +V and +VI) are unstable and their oxidation numbers change to another more stable form (Re+VII ). Sub-projects which were successfully implemented during the research were as follows:  Design and successful realization of the process of synthesis of selected rhenium complexes with aromatic ligands 1,2-dihydroxybenzene, 1,2,3-trihydroxybenzene, and 2,3-dihydroxynaphthalene in reactions with and without air access, and their structural characterization by ESI-MS, APPI- MS, LDI-MS, ESI-MS/MS, NMR, and IR.  ESI-MS SRM and UV/Vis time studies of the behaviour of primary rhenium complexes...

The theoretical part of this diploma thesis consists of current matters regarding the presence of perfluorinated organic compounds in living environment elements. The attention has been focused on perfluoroktanoic acid (PFOA), (PFOS), and (FOSA). Physical-chemical characteristics of these organic pollutants and their toxicological and environmental aspects have been described. Possible ways of the pollutants analytical determination have been specified. The experimental part has explored effects of extraction techniques (sonication, pressurized solvent extraction, solid-phase extraction) used for PFAS separation from seats of fire soil sample. Identification of the analytes have been achieved by liquid chromatography/mass spektrometry.