Brucella melitensis is the etiological agent of brucellosis, a zoonotic disease characterized by abortions in ruminant animals and a chronic debilitating disease in humans. Despite genome sequencing, little is known about the genetic elements behind Brucella s ability to survive and cause disease. Regulatory networks provide the ability to adapt to changing environments by initiating expression from specific regulons to provide adjustments to metabolism and mechanisms that enhance survival. Little detail is known about transcriptional networks that exist in Brucella, but are of great interest because they could provide information about genetic loci that contribute to virulence and intracellular survival. Transposon mutagenesis identified gene loci that are indispensable for the intracellular replication of B. melitensis, including virulence genes, metabolic defects, and transcriptional regulators. Two transcriptional regulators of interest were identified, MucR and VjbR. VjbR is a LuxR homologue and is associated with the regulation of virulence genes in a density dependent manner in a number of bacterial pathogens, and is consistent with VjbR regulation of virulence genes in B. melitensis. Microarray analysis of vjbR and a potential activating signal C12-HSL revealed that both regulate numerous putative virulence genes, including adhesins, proteases, protein secretion/translocation components, potential effector proteins, lipoproteins, a hemolysin and stress survival aids. This analysis also revealed that C12-HSL is not an activating signal of VjbR, but instead acts to suppress VjbR activity. MucR is a transcriptional regulator shown to regulate exopolysaccharide synthesis in the closely related Rhizobiales. Microarray analysis of a mucR mutant in B. melitensis suggested that MucR contributes to the regulation of nitrogen metabolism and iron sequestering/storage. MucR was also found to regulate genes involved in stress response, regulating several proteases that may contribute to enhanced survival and virulence of the organism. This work identified approximately 1,000 genetic loci that may be important to the survival of B. melitensis, revealing potential virulence genes and metabolic defects. Interruption of the VjbR regulon could be a potential chemotherapeutic target for the treatment of brucellosis. Furthermore, this work describes the functions of two gene deletions that are being evaluated as novel attenuated vaccines.

Invasive species are often successful and problematic because of their ability to persist in disturbed and undisturbed environments despite weed management practices. Understanding reproduction and dispersal strategies in these species can aid in developing management approaches to help control their spread. Centaurea melitensis, a nonnative invasive with European origins, is found in disturbed areas of southern California. It produces three different types of flower heads that develop at different times and at different locations on the plant during the growing season. The chasmogamous (CH) flower heads are located at the top of the plant, the initial cleistogamous (iCL) heads are located at the base of the plant and at some branch and axillary points, and the final cleistogamous (fCL) heads are located along the stem and at some branch points. This pattern differs from that in Centaurea solstitialis, its most closely related congener, which develops one type of flower head with two morphologically distinct achenes within each flower head: peripheral and center achenes. The overall objective of this study was to examine potential differences between peripheral and center achenes of Centaurea melitensis, including morphological differences in dispersal features, potential differences in response to temperature, tendency to disperse, dormancy and viability. The approach involved selecting whole plants from the field and separating peripheral and center achenes from each of the three head types. Morphological differences were assessed by measuring mass, fruit length, fruit width, pappus length, pappus width, and elaiosome features. Temperature response patterns were evaluated by exposing peripheral and center achenes to temperatures ranging from 5 C to 30 C and measuring germination. Tendency of different achene types to remain in the flower heads was assessed by comparing ratios of peripheral to center achenes in heads immediately after maturation (March to June) to the ratios remaining in heads in early fall (September). Viability and dormancy testing was performed using a cut test and tetrazolium chloride tests in conjunction with germination tests. Results of these studies indicate that peripheral achenes of Centaurea melitensis were lighter and narrower, with shorter pappi and smaller elaiosomes than center achenes. Peripheral achenes responded similarly to their center counterparts in germination response to temperature, but the pattern differed among head types. Broad temperature optima were observed within the fCL and CH heads and a narrow optimum was observed in iCL. There was no evidence that the peripheral achenes remained in the heads longer than the center achenes. Ratios of peripheral to center achenes were 3.8:1 in CH heads, 2.23:1 in iCL heads, and 1.94:1 in fCL heads. Peripheral achenes were more likely to be dormant while maintaining viability than center achenes were. The results of this study, therefore, indicate that peripheral and center achenes of Centaurea melitensis differ morphologically. Dispersal features, such as pappi and elaiosomes, were more highly developed in center achenes than in peripheral achenes, but these differences were not reflected in differences in behavior to the extent we could measure it (i.e., the tendency to remain in heads or the germination responses to temperature). Differences between peripheral and center achenes of Centaurea melitensis trended in the same direction as differences seen in its closely related congener, Centaurea solstitialis, which has center achenes that disperse more readily than peripheral achenes. However, the differences observed in Centaurea melitensis were not as pronounced as those seen in Centaurea solstitialis.

La connaissance de la structure tridimensionnelle (3D) des protéines est une information capitale. Néanmoins, le nombre de protéines dont la structure 3D a été déterminée expérimentalement est cent fois plus faible que le nombre de protéines connues aujourd'hui. Cet écart ne pourra pas être comblé, car les techniques expérimentales de détermination de structure (diffraction de rayons X et résonance magnétique nucléaire) sont coûteuses et lentes (un an de travail en moyenne pour une seule protéine). Un moyen d'obtenir plus rapidement la structure 3D de protéines est de la prédire par des moyens bioinformatiques. La technique de prédiction la plus précise actuellement est la modélisation par homologie. Celle-ci est basée sur la similitude de structure entre deux protéines de séquences similaires. L'étape critique de cette méthode est l'étape d'alignement entre la séquence à modéliser et une séquence similaire de structure connue. Notre travail a consisté tout d'abord en la conception d'une nouvelle méthode d'alignement pairé très fiable. Cette méthode a ensuite été incluse dans un système automatique de modélisation par homologie: la bonne qualité des structures prédites par le système trouve en partie son origine dans le programme d'alignement utilisé. Enfin, nous avons appliqué notre système de modélisation automatique à la modélisation de toutes les protéines déduites du génome d'une bactérie pathogène étudiée dans notre unité de recherche: Brucella melitensis. Cela nous a conduit à créer une banque de données structurales et fonctionnelles consacrée au génome de cette bactérie. Cette banque de données est devenue un outil de travail indispensable pour plusieurs équipes de recherche européennes qui étudient Brucella melitensis.

RESUME : Le Quorum Sensing est un système de communication bactérien permettant à une population de coordonner l’expression de gènes cibles en fonction de sa densité ou des propriétés du milieu (diffusion, flux....). Chez les bactéries à Gram négatif, le Quorum Sensing est basé sur la synthèse et la détection de petites molécules signal appelées N-acyl-homosérine lactones (AHLs). Les régulateurs transcriptionnels de type LuxR sont les médiateurs de ce système de régulation. Lorsque la concentration en AHLs augmente, ces molécules se fixent au domaine N-terminal d’un régulateur LuxR et provoquent des changement conformationnels entraînant une modification de l’activité du régulateur. Un tel système de régulation a été mis en évidence chez la bactérie Gram négative Brucella melitensis. Cette bactérie pathogène intracellulaire synthétise une dodécanoyl-homosérine lactone (C12-HSL) et possède deux régulateurs de type LuxR : VjbR et BabR. VjbR est impliqué dans la virulence de B. melitensis et est indispensable à l’expression de deux facteurs de virulence: le système flagellaire et le système de sécrétion de type IV VirB. Les C12-HSL ont quant à elles un effet répresseur sur ces deux structures membranaires. Durant ce travail, la mutation du domaine Nterminal du régulateur VjbR a permis de démontrer la capacité de VjbR à médier l’effet des C12-HSL sur l’opéron virB. Les souches mutées dans le gène vjbR forment des agrégats en cultures liquides. Nous avons montré que ce phénotype est lié à la production d’un exopolysaccharide, suggérant pour la première fois que Brucella pourrait former des structures de type biofilm. Cette étude a également permis de mettre en évidence un rôle majeur de VjbR dans la régulation de structures de surface puisque ce régulateur est impliqué dans le contrôle de l’expression de nombreuses protéines de membrane externe (Omp). L’utilisation de la technique d’immunoprécipitation chromatinienne (ChIP) a permis de montrer que VjbR régule directement deux de ces Omps ainsi que l’opéron virB. La virulence de Brucella est en partie basée sur sa capacité à dévier le trafic intracellulaire de ses cellules hôtes (phagocytes professionnels et nonprofessionnels) et à s’y multiplier. Lors de son cycle infectieux, Brucella est confrontée à de nombreux stress et environnements différents, suggérant la nécessité d’une régulation génétique fine en réponse à des stimuli environnementaux. Le Quorum Sensing, de par son implication dans la virulence de ce pathogène pourrait être impliqué dans de telles régulations. Afin d’aborder de façon globale le rôle de VjbR et de BabR chez B. melitensis, des études transcriptomique et protéomique des mutants ΔvjbR et ΔbabR ont été réalisées. Ces études ont permis de mettre en évidence que le Quorum Sensing chez B. melitensis est un système de régulation global, puisqu’il permet de réguler 10% du génome dans les conditions testées (dont 9% sous le contrôle de VjbR). De nombreuses cibles de ces régulateurs sont impliquées dans la virulence et l’adaptation aux conditions de stress (oxydatif, métabolique...), suggérant un rôle important du Quorum Sensing dans l’accomplissement du cycle infectieux de B. melitensis. SUMMARY : Quorum Sensing is a bacterial communication system wich allows the coordinated gene expression within a population regarding its density and environmental properties (diffusion, flow...). In Gram negative bacteria, Quorum Sensing is based on the synthesis and the detection of small diffusible molecules called N-acyl-homoserine lactones (AHLs). LuxR transcriptional regulators are the mediators of these regulation systems. When AHL concentration increases, these molecules bind to the N-terminal domain of a LuxR-type regulator and leads to conformational changes driving the modification of the regulator activity. A similar regulation system has been discovered in the Gram negative bacteria Brucella melitensis. This intracellular pathogen synthesizes a dodecanoylhomoserine lactone (C12-HSL) and possesses two LuxR-type regulators: VjbR and BabR. VjbR is involved in the virulence of this pathogen and is crucial for the expression of two virulence factors : the flagellar system and the type four secretion system VirB. C12-HSL have a repressor effect on these two membrane structures. During this work, mutation of the N-terminal domain of VjbR allowed us to demonstrate the ability of VjbR to mediate C12-HSL effect on the virB operon. vjbR mutated strains aggregate in liquid cultures. We have demonstrated that this phenotype is linked to the production of an exopolysaccharide, suggesting for the first time that Brucella could form biofilm-type structures. This study also demonstrates that VjbR has a major role in the regulation of surface structures because this regulator controls the expression of many outer membrane proteins (Omp). Using the chromatin immunoprecipitation technique (ChIP), we have shown that two of these Omps, as well as the virB operon, are directly regulated by VjbR. The virulence of Brucella is partly based on its ability to deviate the intracellular traffic of its host cells (professional and nonprofessional phagocytes) and to proliferate within these cells. During its infectious cycle, Brucella faces numerous stresses and environments, suggesting the necessity of a finely tuned genetic regulation depending on environmental stimuli. Quorum Sensing, through its involvement in the virulence of this intracellular pathogen, could be involved in such regulations. In order to investigate the role of VjbR and BabR in B. melitensis, global transcriptomic and proteomic studies of ΔvjbR and ΔbabR mutants were performed. These studies demonstrate that Quorum Sensing is a global regulation system in B. melitensis because it controls the expression of 10% of the genome in the condition tested (9% through VjbR). Numerous targets of these two regulators are involved in virulence and adaptation to environmental stresses (oxydative, metabolic...), suggesting an important role of Quorum sensing in the achievement of the infectious cycle of B. melitensis.

Publicación a texto completo no autorizada por el autor / Analiza el grado de diversidad genética de 24 aislados de B. melitensis obtenidas a partir de las muestras clínicas de pacientes mediante la aplicación de la técnica HOOF-Prints, mediante el análisis del número variable de repeticiones en tándem de 8 loci, un método rápido, de bajo costo y que permite determinar la diversidad alélica de la población siendo el locus 7 el más polimórfico (D = 0.8). / Tesis

Brucellosis is the most common zoonotic disease worldwide. The intracellular localization of Brucella hinders the action of drugs that poorly cross cell membrane barriers. Additionally, when the immune response fails to clear the infection, chronic brucellosis ensues that becomes more challenging to treat with antibiotics. Therefore, two approaches, intracellular drug delivery and immunostimulation, have been explored in this dissertation, with an aim to develop a better therapeutic against Brucella infection in mice. First, to overcome the cell membrane barriers, drug loaded nanoparticles were tested to treat B. melitensis infection in mice. Gentamicin loaded block-ionomer complexes (BICs) and magnetite block-ionomer complexes (MBICs) were tested in vitro and along with clusters of MBICs (MBIClusters) were tested in vivo as tools to deliver gentamicin intracellularly. While these complexes showed very high efficacy compared to free gentamicin against Brucella in macrophage cell culture, they failed to show similar efficacies in mice. Histopathological examination of kidneys from mice treated with MBICs or MBIClusters showed deposition of brown pigment-laden macrophages in peri-renal adipose tissue and the pigment was confirmed as MBICs or MBIClusters based on special staining for iron. Additionally, it was found that doxycycline-gentamicin (DG) treatment results in better clearance of Brucella from infected mice compared to doxycycline alone. Secondly, two vaccine candidates, irradiated B. neotomae (IBN) and outer membrane vesicles (OMVs), were tested as immunostimulants to treat chronic B. melitensis infection in mice in combination with antibiotics. The non-ionic block co-polymer Pluronic P85, when mixed with OMVs as an adjuvant showed significantly higher protection against B. melitensis challenge in vaccinated mice compared to those vaccinated with OMVs alone. When tested as immunostimulants, there was no additive effect of vaccines and antibiotics on Brucella clearance from mice. However, IBN enhanced the production of IFN-γ while OMVs were associated with enhanced antibody production. This enhancement in the immune system resulted in the control of Brucella growth after the end of treatment. When given without antibiotics, vaccine alone failed to clear any Brucella from infected mice. The use of these vaccine candidates in combination with antibiotics shows a potential to prevent relapses in cases of brucellosis. / Ph. D.

Brucellosis is one of the neglected diseases in Nigeria. In Lagos, the commercial capital of Nigeria with about twenty one million people, a descriptive cross-sectional study was carried out in order to determine the sero-prevalence of brucellosis among people at risk in some selected abattoirs and secondary health care facilities (hospitals) in the state. Mixed sampling method was employed at the abattoir while convenient sampling method was used in sampling the respondents at the hospitals. Sera samples from three hundred and one (n=301) abattoir-based workers and traders; and one hundred and twenty one (n=121) hospital-based individuals which include people with febrile illnesses and blood donors were tested for brucellosis using Rose Bengal Plate test (RBPT), with indirect ELISA being used as a confirmatory test. Of the 301 abattoir-based workers and traders, 27 (8.97%) were sero-positive to the infection when Rose Bengal Plate test antigen was used. The twenty seven individuals consists of fifteen (15) butchers; four (4) veterinarians; two (2) meat transporters and bone/cow horn dealers each as well as one each of blood meal producer, abattoir engineer, water seller and meat supplier. When blood samples from the sero-positive individuals were subjected to ELISA, 3 (11.1%) were sero-positive to the brucellosis, while one is equivocal. These results confirm that agglutination observed on RBPT might be related to unknown cross-reactions and confirmation with a different test was necessary. None of the hospital-based respondents is sero-positive to the infection. The clinical signs significant for the infection in this study were fever, joint pain, lower backache, regular headache and miscarriage. Brucellosis awareness level among the respondents was very low. Data was analysed using (SPSS) version 20.0 at α0.05 significant level. The significant risk factors for human brucellosis according to this research are consumption of fura (unpasteurized milk) and wara (fresh cheese). The study revealed that brucellosis is not only an occupational disease but can also affect people who trade or live in proximity with infected animals. / Agriculture, Animal Health and Human Ecology / M. Sc. (Agriculture)