Chapter 1: The unique chemical and biological properties of porphyrins have led to increased interest in the development of porphyrin-based materials. Metal organic frameworks (MOFs) can act as a scaffold for the immobilization of porphyrins in desired arrangements. The crystalline nature of MOFs allows for control over spatial arrangement of porphyrins and the local environment of the porphyrin molecules. This opens up the possibility of conducting systematic studies aimed at exploring structure-property relationships. Several strategies for the design and synthesis of porphyrin-based frameworks have been developed over the last two decades, such as, the pillared-layer strategy, construction of nanoscopic metal-organic polyhedrals (MOPs), post-synthetic modification, etc. These strategies provide an opportunity to engineer porphyrin-based MOFs that can target a specific application or serve as multi-functional assemblies. Porphyrin-based MOFs provide a tunable platform to perform a wide variety of functions ranging from gas adsorption, catalysis and light harvesting. The versatile nature of these frameworks can be exploited by incorporating them in multi-functional assemblies that mimic biological and enzymatic systems. Nano-thin film fabrication of porphyrin-based MOFs broadens their application range, making it possible to use them in the construction of photovoltaic and electronic devices. Chapter 2: The reaction of zirconium salts with meso-tetracarboxyphenylporphyrin (TCPP) in the presence of different modulators results in the formation of a diverse set of metal-organic frameworks (MOFs), each displaying distinct crystalline topologies. However, synthesis of phase-pure crystalline frameworks is challenging due to the concurrent formation of polymorphs. The acidity and concentration of modulator greatly influence the outcome of the MOF synthesis. By systematically varying these two parameters, selective framework formation can be achieved. In the present study, we aimed to elucidate the effect of modulator on the synthesis of zirconium-based TCPP MOFs. With the help of powder X-ray diffraction (PXRD) and scanning electron microscopy (SEM), modulator candidates and the optimal synthetic conditions yielding phase-pure PCN-222, PCN-223 and MOF-525 were identified. 1H NMR analysis, TGA and N2 gas adsorption measurements were performed on select MOFs to gain insight into the relationship between their defectivity and modulator properties. Chapter 3: Singlet-singlet energy transfer in PCN-223(free-base), a highly stable Zr-MOF based on meso-tetrakis(4-carboxyphenyl)porphyrin was investigated, using diffuse reflectance spectroscopy, steady-state emission spectroscopy, time-correlated single photon counting (TCSPC) spectroscopy and nanosecond transient absorption spectroscopy. The effects of the surrounding media and temperature on the excited-state properties of PCN-223(fb) were explored to understand the mechanistic aspects of energy transfer. Stern-Volmer photoluminescence quenching of PCN-223(fb) suspensions was performed to extract quenching rate constants and gain insight into the efficiency of energy transfer. Chapter 4: The fourth chapter of this thesis is adapted from chapter 14 of the book "Elaboration and Applications of Metal-Organic Frameworks" authored by Jie Zhu, Shaunak Shaikh, Nicholas J Mayhall and Amanda J Morris. This chapter summarizes the fundamental principles of energy transfer in MOFs and provides an overview of energy transfer in lanthanide-Based luminescent MOFs, Ru/Os-Based MOFs, porphyrin- and metalloporphyrin-based MOF materials, and nonporphyrinic, organic chromophore-based MOFs. / Master of Science / Metal Organic frameworks (MOFs) composed of Zirconium-oxo clusters connected through meso-tetra(4-carboxyphenyl)porphyrin (TCPP) linker molecules have emerged as promising solid-state materials because of their unique structural features and diverse applications. Although these MOFs have demonstrated great potential over the years, synthesizing them in phase-pure form has proven to be very challenging as they are susceptible to polymorphism. Syntheses of these frameworks often result in phase mixtures and have poor reproducibility. To address, this issue, we conducted a systematic exploration of the synthetic parameter landscape to identify reaction conditions for the synthesis of phase-pure Zirconium-based porphyrin MOFs, and to gain deeper insights into the factors governing the formation of these MOFs. We also investigated the defectivity of pristine Zr-TCPP MOFs using a variety of techniques, including 1H NMR spectroscopy, thermogravimetric analysis (TGA), inductively coupled plasma mass spectrometry (ICP-MS), and Nitrogen gas adsorption/desorption measurements. The long-term goal of this project is to use phase-pure Zr-based porphyrin MOFs as model systems to study energy transfer in three dimensional structures. To achieve this goal, we characterized the photophysical properties of PCN-223(fb) (a Zr-based porphyrin MOF) using a variety of techniques including steady-state photoluminescence spectroscopy, time-resolved photoluminescence spectroscopy, nanosecond transient absorption spectroscopy and femtosecond transient absorption spectroscopy. Understanding the mechanistic aspects of energy transfer in PCN-223(fb) can pave the way for the design of a new generation of solar energy conversion devices.

The synthesis, characterization and photophysical properties of three Zr-based Metalorganic frameworks (MOFs) assembled from 2,6-anthracenedicarboxylic acid (2,6-ADCA, 2,6- MOF) and 1,4-anthracenedicarboxylic (1,4-ADCA, 1,4-MOF), and 9,10-anthracenedicarboxylic acid (9,10-ADCA, 9,10-MOF) are described. The crystal structure of the 9,10-MOF was elucidated by synchrotron powder X-ray diffraction (PXRD) analysis and is isostructural with the well-known UiO-66 framework. The 2,6-MOFs also form highly crystalline, octahedral-shaped structures and was characterized by PXRD. Le Bail refinement of the powder pattern revealed that the 2,6-MOF also has UiO-type crystal structure. Conversely, incorporation of the 1,4-ADCA ligand results in large rod-shaped crystals. The excited-state properties of the MOFs were examined using steadstate diffuse reflectance, steady-state emission spectroscopy and time-correlated single photon counting (TCSPC) spectroscopy and are compared to those of the corresponding ligand in solution. Both the unique fluorescent properties of the ligand as well as individual framework structure, result in distinctive luminescent behavior and dictate the extent of intermolecular interactions. Specifically, the 2,6-MOF displays monomeric emission with a fluorescence lifetime (t) of 16.6 ± 1.1 and fluorescence quantum yield (Ff). On the other hand, the 1,4-MOF displays both monomeric and excimeric emission, with corresponding lifetime values of 7.5 ± 0.01 and 19.9 ± 0.1, respectively and a quantum yield of 0.002 ± 0.0001. The propensity for photon upconversion through sensitized triplet-triplet annihilation (TTA-UC) was probed in the three anthracene-based MOFs. The MOFs were surface-modified with Pd(II) mesoporphyrin IX (PdMP) as the triplet sensitizer. Upconverted emission from the 9,10-MOF was observed, with a quantum efficiency (FUC) of 0.46 % and a threshold intensity (Ith) of 142 mW/cm2 . The variation of the spacing between the anthracene units in the MOFs was found to have significant impact on TTA-UC. As a result, upconverted emission is only displayed by the 9-10-MOF. The distance between anthracene linkers in the 2,6-MOF are too large for TTA to occur, while the short distances in the 1,4-MOF inhibit upconversion through competitive excimer formation. To further explore the effects of chromophore spacing on energy transfer processes, a series of zinc-based mixed-ligand MOF were constructed from Zn(II) tetrakis(4- carboxyphenyl)porphyrin (ZnTCPP) and pyrazine, 2,2′-bipyridine (pyz) or 4,4′-bipyridyl (bpy) or 1,4-di(4-pyridyl)benzense (dpbz), comprising ZnTCPP/Zn paddlewheel layers. Across this series, the porphyrin spacing was approximately 6 Å, 11 Å and 16 Å for pyz, bpy and dpbz, respectively. The photophysical properties of the MOFs were explored using stead-state diffuse reflectance spectroscopy and steady-state and time-resolved emission spectroscopies. Florescence quenching studies examined the correlation between porphyrin spacing and efficiency of energy transfer. / Ph. D.

New synthetic advances in the control of nanoparticle size and shape along with the development of new surface modifications facilitates the growing use of nanomaterials in biomedical applications. Of particular interest are functional and biocompatible nanomaterials for sensing, imaging, and drug delivery. The goal of this research is to tailor the function of nanomaterials for biomedical applications by improving the biocompatibility of the systems. Our work demonstrates both a bottom up and a post synthetic approach for incorporating stability, stealth, and biocompatibility to metal based nanoparticle systems. Two main nanomaterial projects are the focus of this dissertation. We first investigated the development of a green synthetic procedure to produce gold nanoparticles for biological imaging and sensing. The size and morphology of gold nanoparticles directly impact their optical properties, which are important for their function as imaging agents or their use in sensor systems. In this project, a synthetic route based on the natural process of biomineralization was developed, where a designed protein scaffold initiates the nucleation and subsequent growth of gold ions. To gain insight into controlling the size and morphology of the synthesized nanoparticles, interactions between the gold ions and the protein surface were studied along with the effect of ionic strength on interactions and then subsequent crystal growth. We are able to control the size and morphology of the gold nanoparticles by altering the concentration or identity of protein scaffold, salt, or reducing agent. The second project involves the design and optimization of metal organic framework nanoparticles for an external stimulus triggered drug delivery system. This work demonstrates the advantages of using surface coatings for improved stability and functionalization. We show that the addition of a polyethylene glycol surface coating improved the colloidal stability and biocompatibility of the system. The nanoparticle was shown to successfully encapsulate a variety of small molecule cargo. This is the first report of photo-triggered degradation and subsequent release of the loaded cargo as a mechanism of stimuli-controlled drug delivery. Each of the aforementioned projects demonstrates the design, synthesis, and optimization of metal-based systems for use in biomedical applications. / Ph. D.

High-performance functional electrode materials are critical for the development of electrochemical energy conversion and storage technologies. Among various advanced materials, three-dimensional (3D) porous structures have attracted extensive interest due to their high surface area and capability for efficient mass transport. Metal-organic frameworks (MOFs) are a novel class of porous coordination polymers constructed with organic linkers connected by inorganic nodes. Their extraordinarily high surface area, permanent pores/channels, good thermal and chemical stabilities have made MOFs one of the most promising materials for various electrochemical applications, including electrocatalysis, supercapacitors, Lithium-ion batteries, chemical sensors, etc. The present dissertation focuses on the investigation of charge transfer mechanism in MOF films so as to establish design rules for future MOF design, and the exploration of MOF-based materials for electrochemical and photoelectrochemical applications. To promote the use of MOF-based materials in electrochemical applications, efficient charge transfer is a necessity. In redox-active MOFs, charge transfer can happen through redox hopping, i.e. site-to-site electron hopping coupled to diffusion of counter ions to balance electroneutrality. While the apparent diffusion coefficient (Dapp) has been employed to describe the overall charge transfer efficiency, independent elucidation of electron and ion diffusion is crucial for providing insights into the mechanism of charge transfer in MOFs. In Chapter 2, we investigated the MOF pore size effect on electron and ion diffusion. Three redox-active ferrocene-doped MOF (Fc-MOF) films with different pore sizes immobilized on conductive substrates were prepared, and electron and ion diffusion coefficients and rate constants were quantified by applying a theoretical model to chronoamperometric responses. Increasing MOF pore size led to an increase in ion diffusion rate constant and a decrease in electron diffusion rate constant. The overall charge transfer rate constant increased when MOF pore size increased, implying the ability of promoting efficient charge transfer through control of MOF pore size. As charge transfer via redox hopping proved to be feasible, Chapter 3 focused on the application of a ruthenium(II)-polypyridyl doped MOF film immobilized on a conductive substrate, UiO-67-Ru@FTO, for solid-state electrochemiluminescence (ECL). In the presence of tripropylamine as a coreactant, UiO-67-Ru@FTO exhibited higher ECL intensity and better reproducibility compared to corresponding solution-based ECL system. Subsequently, UiO-67-Ru@FTO was successfully used for dopamine detection, highlighting the great potential of using MOF-based materials as solid-state ECL detector for practical applications. Covalent-organic frameworks (COFs) are a recently emerging family of crystalline organic polymers constructed with organic building blocks linked by covalent bonds. In addition to advantages including high surface area and high porosity that are similar to MOFs, COFs possess low density due to the constitution of light-weighted elements and excellent stability owing to the robust covalent bonds. Therefore, it is of our interest to investigate the properties and potential applications of COFs. Two-dimensional (2D) COFs are composed of conjugated organic layers stacked via - interactions. Chapter 4 focused on understanding the effects of intraplanar -conjugation and interplanar -stacking on the photophysical properties of a 2D COF, TpBpy. Compared to the two building blocks, TpBpy exhibited a red-shifted emission, due to the - stacking. Density functional theory (DFT) calculations were performed on energies of the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO). It was found that the extended structure of the framework resulted in a decrease in the HOMO-LUMO gap. The experimental and computational studies reveal the important influence of intraplanar and interplanar interactions on photophysical properties in 2D COFs. In Chapter 5, we modified the COF TpBpy with nickel(II) and investigated its application as an electrocatalyst for 5-hydroxymethylfufural (HMF) oxidation. Unlike TpBpy characterized in Chapter 4, TpBpy thin films were prepared by an interfacial crystallization strategy. The films were transferred to conductive substrates and then post-synthetically modified by nickel acetate. Similar to redox-active MOFs, the resulting TpBpy-Ni COF film exhibited redox conductivity. TpBpy-Ni showed good catalytic activity for HMF oxidation under basic conditions. This study suggests the great potential of functionalized COFs for electrochemical applications. / Doctor of Philosophy / The increasing demand for clean and efficient energy has triggered a great deal of research interest in developing novel energy conversion and storage technologies. In particular, electrochemical (EC) systems including supercapacitors, Lithium-ion batteries, artificial photosynthetic system, fuel cells, etc. have drawn significant attention. The key component in high-performance EC energy conversion and storage devices is the functional electrode materials. Three-dimensional (3D) porous nanostructures have been widely applied as advanced electrode materials due to their high surface area that enables more liquid/solid interfacial interactions, and pores/channels that allows efficient mass diffusion and transport. Metal-organic frameworks (MOFs), made of organic ligands bridged by inorganic nodes, are a novel kind of porous materials with extraordinarily high surface area and permanent porosity. As a result, there is great potential in developing MOF-based electrode materials for EC applications. As the name itself suggests, EC systems rely on electrochemical reactions that involve transfer of charges (i.e. electrons and ions). Therefore, efficient charge transfer is vital for achieving high performance. While MOFs used for gas separation and storage have been reported, their electrochemical applications are still in early stages. The fundamental understanding of charge transfer in MOFs is in its infancy. As a result, there is an urgent demand for understanding the nature of charge transfer in MOFs. In this dissertation, we investigated the mechanism of charge transfer by independent quantification of electron and ion transfer rate constants. With a better understanding in hand, we also explored two electrochemical applications in MOFs, electrocatalysis and electrogenerated chemiluminescence.

Increasing energy demand will not only aggravate global warming, but also cause fossil fuels shortage in the near future. Solar energy is an infinite green energy resource that can potentially satisfy our energy usage. By utilizing solar energy to drive reactions like water splitting, solar fuels system are able to produce valuable energy resource. Catalysts for water oxidation are the essential component of water splitting cells which have been intensively studied. As a solid state porous crystalline material with synthetic tunability, Metal-organic framework (MOF) is a promising platform for water oxidation catalysis due to its outstanding properties. Herein, we aimed to develop molecular catalysts incorporated MOF for water oxidation and study the reaction mechanism. Chapter 1 introduces the background of water oxidation and previous research on ruthenium nuclear water oxidation catalysts (WOCs). The reaction mechanism of binuclear and mononuclear ruthenium WOCs was briefly summarized. Opportunities for the design and the synthesis of MOF based WOCs were then discussed. Lastly, studies about MOF based WOCs were categorized based on the difference of the WOCs active site location in frameworks. Water oxidation catalyst [Ru(dcbpy)(tpy)OH2]2+ (RuTB) was incorporated into UiO-67 MOF (resulting materials denoted as RuTB-UiO-67) for chemical water oxidation in Chapter 2. Differences of catalytic reaction behavior between homogeneous RuTB and RuTB incorporated in MOF were examined. Based on MOF particle size dependent catalysis reaction experiments, in-MOF reactivity was anticipated to be primarily arose from redox hopping between RuTB active sites in the framework. In Chapter 3, RuTB-UiO-67 MOF thin films grown on conducting FTO substrate (RuTB-UiO-67/FTO) were synthesized to test their catalytic activity of electrochemical water oxidation. Electrochemical behavior of RuTB-UiO-67/FTO was found to be consistent with homogeneous RuTB by various electrochemistry study and in-situ X-ray absorption spectroscopy characterization. Scan-rate-dependent voltammetry study demonstrated the homogeneous distribution of electrochemical active sites throughout the MOF thin film. Diffusion controlled redox hopping was attributed to be the main charge transfer pathway during catalysis. In order to pursue photo-induced water splitting system, we further our study by investigating MOF based photoelectrochemical catalysis in Chapter 4. Photoelectrochemical alcohol oxidation was chosen as the preliminary-stage study towards the more challenging goal, photoelectrochemical water oxidation. Electron transfer processes of the photosensitizer ([Ru(bpy)2(dcbpy)]2+) and the catalyst (RuTB) doped UiO-67 MOF were investigated with transient absorption spectroscopy analysis. Finally, the role of redox hopping in electrocatalysis by MOF was reviewed in Chapter 5. Pathways of charge transfer in electroactive MOF were first summarized. Redox hopping in MOF was then compared with previous studies on redox active polymer thin films. Lastly, factors that will affect the rate of redox hopping of MOF electrocatalyst were discussed. / Doctor of Philosophy / Solar energy is the most abundant renewable energy resource that can satisfy our energy demand. Solar fuel devices like water splitting systems can generate hydrogen as an environmental friendly energy source. However, the commercialization of water splitting system was hindered by one particular half reaction, water oxidation. Therefore, the development of efficient and stable water oxidation catalysts is critical. Metal-organic framework (MOF) as a porous crystalline material with large surface area is a great platform for stable and reusable solid state water oxidation catalyst. Herein, we incorporated ruthenium based molecular water oxidation catalysts into a MOF denoted as UiO-67. The catalysts doped MOF was able to oxidize water chemically and electrochemically. Furthermore, light absorber molecules were introduced to the MOF to test their catalytic ability towards photoelectrochemical alcohol oxidation. It provides valuable information for the more challenging study of MOF based photoelectrochemcal water oxidation catalysts.

Yes / Three highly porous Zr(IV)-based metal–organic frameworks, UBMOF-8, UBMOF-9, and UBMOF-31, were synthesized by using 2,2′-diamino-4,4′-stilbenedicarboxylic acid, 4,4′-stilbenedicarboxylic acid, and combination of both linkers, respectively. The mixed-linker UBMOF-31 showed excellent hydrogen uptake of 4.9 wt% and high selectivity for adsorption of CO2 over N2 with high thermal stability and moderate water stability with permanent porosity and surface area of 2552 m2 g−1. / University of Bath; Royal Society of Chemistry; Engineering and Physical Sciences Research Council

Yes / The synthesis of metal–organic frameworks with large three-dimensional channels that are permanently porous and chemically stable offers new opportunities in areas such as catalysis and separation. Two linkers (L1=4,4′,4′′,4′′′-([1,1′-biphenyl]-3,3′,5,5′-tetrayltetrakis(ethyne-2,1-diyl)) tetrabenzoic acid, L2=4,4′,4′′,4′′′-(pyrene-1,3,6,8-tetrayltetrakis(ethyne-2,1-diyl))tetrabenzoic acid) were used that have equivalent connectivity and dimensions but quite distinct torsional flexibility. With these, a solid solution material, [Zr6O4(OH)4(L1)2.6(L2)0.4]⋅(solvent)x, was formed that has three-dimensional crystalline permanent porosity with a surface area of over 4000 m2 g−1 that persists after immersion in water. These properties are not accessible for the isostructural phases made from the separate single linkers. / Financial support from EPSRC under EP/H000925, access to the HPC service ARCHER via EP/L000202. S.N. thanks the EU for a Marie Curie fellowship (PIEF-GA-2010-274952). C.M.-G. thanks the Spanish MINECO for a Ramón y Cajal Fellowship (RYC-2012-10894).

Yes / Pesticide contamination is a global issue, affecting nearly 44% of the global farming population, and disproportionately affecting farmers and agricultural workers in developing countries. Despite this, global pesticide usage is on the rise, with the growing demand of global food production with increasing population. Different types of porous materials, such as carbon and zeolites, have been explored for the remediation of pesticides from the environment. However, there are some limitations with these materials, especially due to lack of functional groups and relatively modest surface areas. In this regard, metal-organic frameworks (MOFs) provide us with a better alternative to conventionally used porous materials due to their versatile and highly porous structure. Recently, a number of MOFs have been studied for the extraction of pesticides from the environment as well as for targeted and controlled release of agrochemicals. Different types of pesticides and conditions have been investigated, and MOFs have proved their potential in agricultural applications. In this review, the latest studies on delivery and extraction of pesticides using MOFs are systematically reviewed, along with some recent studies on greener ways of pest control through the slow release of chemical compounds from MOF composites. Finally, we present our insights into the key issues concerning the development and translational applications of using MOFs for targeted delivery and pesticide control.

Metal-organic frameworks (MOFs) have come to the forefront over the past two decades because of their potential application in hydrocarbon separation under ambient conditions. MOFs are coordination polymers constructed by joining metal ions or metal clusters with organic linkers containing Lewis basic binding atoms. The main focus of the research pursued in this dissertation was to design and synthesize new metal-organic frameworks based on larger polycarboxyaryl linkers developed by our group. The linker design was as such to add a phenyl ring and an unsaturated C2 spacer to the analogous linkers based on linker expansion strategy. The aim of the linker design was to potentially increase the surface area, by virtue of the overall larger linker size, and afford higher adsorption energy to the hydrocarbon molecules (especially to the unsaturated hydrocarbons) owing to π(hydrocarbon)-π(linker) possibly chemisorptive stacking interactions, hence increasing their separations from impurities. To accomplish this goal, we reported several new MOFs and studied their separation abilities. We were also able to report MOFs for the capture of CO2 from industrial flue gases under ambient conditions.

Les MOFs résultent de l’organisation de polyèdres métalliques reliés par des molécules organiques chélatantes pour former un réseau poreux. La construction de solides hybrides organiques/inorganiques permet d’imaginer un très grand nombre de matériaux aux propriétés structurales et physico-chimiques variées. Le confinement du substrat dans une structure rigide, associé à des propriétés particulières des clusters métalliques ainsi qu’à des parois pouvant être fonctionnalisées, fournissent un environnement catalytique unique, plaçant les MOF à la frontière entre les espèces types zéolites et les enzymes. Cependant, il existe aujourd’hui très peu de MOFs possédant plus d’une fonction catalytique. Néanmoins, les propriétés catalytiques des MOFs peuvent être améliorées de façons non négligeables grâce aux méthodes de post-fonctionalisation. Dans ce travail, nous reportons le développement d’une méthode de post-fonctionnalisation originale des amino-MOFs. La première étape consiste à convertir la fonction amine en fonction azoture. Puis, sans isolation ni purification, le MOF fonctionnalisé est obtenu par « Click Chemistry » en ajoutant l’alcyne correspondant. Cette méthode peut être appliquée à tous les types d’amino-MOFs et à quasi toutes les fonctions chimiques que l’on souhaite greffer. Une large librairie de nouveaux matériaux a ainsi été obtenue et complètement caractérisée. Cette méthode a aussi été utilisée pour créer des MOFs catalytiques à façon pour une réaction de transesterification, ainsi que pour l’investigation de nouvelles applications plus fines (niches industrielle) / MOFs result from the association of metallic clusters connected by organic linkers to form a net. It is acknowledged that ultimately MOFs could mimic “enzymes” using “molecular recognition” concept to allow high chemio-, regio-, enantio-selectivity. We could indeed anticipate MOFs as potential “artificial enzymes” that can combine several properties at the nanometer scale in a concerted fashion. However to date, the number of MOFs with more than one reactive “catalytic” function is rather scarce. A key to address advanced MOF materials suitable for more sophisticated applications is to add functionalities of greater complexity in a controlled manner. The ability to modify the chemical environment of the cavities within MOFs would allow tuning of the interactions with guest species, and serve as a route to tailor the chemical reactivity of the framework. However, the introduction of reactive chemical functions by self-assembly methods is not a trivial task. In this work, we report an original PSM method starting from amino derived MOFs. The first step consists in converting the amino group into azide (N3). Without isolation nor purification, the desired functionalized material is obtained by grafting the corresponding alkyne using “Clik Chemistry”. This method can be applied to all kind of amino-MOFs and to all kind of grafted chemical functions. A diverse library of original MOFs was synthesized and characterized. Finally, this method was used to engineer catalytic MOFs for the transesterification of ethyldecanoate with methanol or to investigate applications in specialized industrial niches