Pour soutenir la demande en denrées alimentaires d’une population mondiale croissante, les rendements des productions en céréales, notamment du blé, doivent être améliorés par sélection végétale. À cause du changement climatique et de l’épuisement des ressources fossiles, les systèmes racinaires des futures variétés de blé devront être adaptés aux épisodes de sécheresse et aux sols peu fertiles. Il est donc crucial de développer des outils de mesure de traits racinaires au champ répondant aux exigences de la sélection variétale. Ainsi, la pertinence des minirhizotrons et de l’impédance électrique des plantes a été évaluée en essai agronomique sur des variétés de blé, conçu pour obtenir un panel varié d’enracinement. Nous avons montré que les minirhizotrons fournissent une quantification dynamique et pertinente de la longueur de racines profondes, qui jouent rôle majeur dans les rendements obtenus en conditions pluviales. Malgré une sous-estimation de la partie superficielle des systèmes racinaires, la conversion volumétrique des données issues des minirhizotrons basée sur une profondeur de champ, et à l’aide de prélèvements pour les horizons de surface, a permis une estimation du ratio de masse racinaire sur masse aérienne.À travers une étude méthodologique en laboratoire, nous avons déterminé le montage optimal de mesure d’impédance électrique sur des plants de blé. Son application au champ montre que la qualité de l’estimation diminue au cours de la croissance et dépend de l’humidité du sol.Nous avons montré que l’impédance des plants de blé est décrite par un modèle de condensateur plan, les tissus végétaux formant un diélectrique imparfait. Ainsi, la réactance est un prédicteur de la masse racinaire, uniquement dans les couches superficielles et sèches du sol. / Ensuring the food supply of an increasing world population could be achieved by improvingcrop yields through plant breeding. Due to the climate change and the rarefaction of fossilresources, the root systems of the future wheat cultivars should be adapted to low soilmoisture and low soil fertility. Developing tools for in situ root traits measurements fulfilling the high through put requirement of modern breeding is crucial. For this purpose, anagronomic trial was conducted on wheat cultivars to evaluate the relevance of minirhizotrons and plant electrical impedance on assessing varied rooting architecture.We showed that minirhizotrons provide dynamic and relevant quantifications of deep rootlengths, which was a key factor in crop yield under rainfed conditions. In spite ofunderestimated lengths in the shallow part of the root systems, a volumetric conversion ofminirhizotron data using a depth-of-field criterion, coupled with auger sampling for surfacelayers, allowed fairly estimation root to shoot ratio at different growth stages.We determined the optimal setup of plant impedance measurements by a methodological study performed under laboratory conditions. The application of this optimal set up to an in situ survey showed that the quality of the predictions decreased at later growth stages andunder low soil wetness. The plant impedance was described by an imperfect parallel-platecapacitor mode, where plant tissues acted as the separating medium. Consequently, electrical reactance is a root biomass sensor, but only in surface soil layers at low water content.

Grasslands are characterized by recurring disturbances such as fire and grazing occurring against a background of topoedaphic heterogeneity and climatic variability. The result is a complex, multi-scaled disturbance regime, in which fire and grazing often have interactive roles, yet they have usually been studied independently. Relationships between climate, fire and simulated grazing (=mowing) were explored to determine the roles these disturbances play in shaping patterns and processes in southern mixed-grass prairie. A field experiment investigated the potential effects of these disturbances on above and belowground plant productivity, patch dynamics, and soil respiration over a 2-year period characterized by drought (1998) and normal (1999) rainfall. Spring burning and mowing had interactive effects on aboveground net primary production (ANPP). Consistent with published single factor studies, burning without mowing doubled ANPP, whereas mowing in the absence of burning had neutral effects. However, subsequent mowing on burned plots reduced ANPP gains to levels comparable with all unburned plots. Drought reduced ANPP by 22% relative to a normal rainfall year. In contrast to the traditional model of root response to defoliation, burning and mowing each stimulated root length recruitment measured with minirhizotrons. However, subsequent mowing on burned plots did not produce additional root recruitment. Fire and mowing appear to interact by affecting different components of root recruitment (production and mortality, respectively). Root biomass recovered from ingrowth cores were not correlated with minirhizotron results, and responded only to drought, suggesting that methodological differences have contributed to the varied root responses reported in the literature. Drought suppressed soil respiration, diminished soil moisture, and enhanced soil temperature, whereas fire and/or mowing had little effect. Results suggest that any fire or mowing effects on soil respiration in southern mixed-grass prairie may be highly constrained by moisture limitations during dry periods. In summary, patch level response to fire is a pulse of root recruitment followed by increased ANPP, unless subsequent grazing offsets these gains. Grazing alone produces a pulse of root recruitment, perhaps to replace consumed foliage. This study demonstrates the interactive nature of fire and grazing in grasslands, and the perils of single-factor studies.

A significant acreage of poorly drained sites occurs in the Western Gulf region of the United States. These sites experience standing water through much of the winter and spring, resulting in poor seedling survival. In addition, the sites occasionally experience a summer drought that affects tree growth. This study was designed to determine the effects of intensive forest management on seedling growth and physiology, and to enhance seedling performance under these harsh conditions. Fertilization, chemical vegetation control and mechanical site preparation were used in different combinations to test the effects of these intensive forest management tools on seedling above- and below-ground growth, survival, water status, gas exchange attributes, and nutrient concentrations in the foliage and soil solution. Ten sites were established in southern Arkansas in 1998 and 1999 to monitor loblolly pine (Pinus taeda L.) seedling performance in three consecutive growing seasons between 1998 and 2000. Fertilization, chemical vegetation control and mechanical site preparation increased above-ground growth. Growth increment from mechanical site preparation was comparable to that from fertilization. Survival was not affected by any treatment. Fertilization enhanced root growth, more so in the shallow soil layers. Subsoil bulk density greatly restricted root growth, resulting in decreased above-ground growth. Chemical vegetation control made more soil water available to the seedlings during drought, resulting in increased seedling water potential. The effect of chemical vegetation control on seedling water potential was absent in the early growing season when soil moisture was abundant. Seedlings on plots treated with bedding-plus-fertilizer or bedding alone experienced stomatal closure at times of severe water stress while those treated with chemical vegetation control were able to continue net carbon dioxide assimilation. Fertilization did not increase needle nutrient concentrations, but increased needle weight, thereby increasing total nutrient content. Fertilization increased base cation concentrations in the soil solution, but had no effect on nitrogen and phosphorus concentrations. Intensive forest management was found to be a viable tool for optimum loblolly pine seedling growth and survival on poorly drained sites in the Western Gulf region of the United States.

Population growth in regions of the Intermountain West has resulted in rapid growth of residential neighborhoods. In Utah, the landscapes associated with these expanding neighborhoods consume vast quantities of treated water. This is a concern in all states of the Intermountain West, as water becomes increasingly scarce. Traditionally used turfgrasses, trees and other plants in Intermountain West landscapes require significant amounts of supplemental water considering the intense sunlight, dry winds and sparse rainfall typical of the region. Characterizing the interactions between turfgrass and tree species in these landscapes can aid in the identification of candidate species that consume less nutritional and water resources, while maintaining satisfactory appearance. A study was conducted investigating the nature of interactions between tree and turfgrass species in a constructed landscape of the Intermountain West. An experiment was performed investigating differences in rooting length and volume between combinations of two tree (Robinia pseudoacacia L., Gleditsia triacanthos var. inermis L.) and three turfgrass [Poa pratensis L., Buchlöe dactyloides (Nutt.) Engelm., Festuca arundinacea Schreb.] species. A minirhizotron system was used to obtain root images at three times during the growing seasons of 2006 and 2007 at depths from 1-15 cm in each tree-turfgrass rooting zone. Images were analyzed to determine combined total volume, length, and surface area of turfgrass and tree roots. This research shows that root growth differences occur in turfgrass-tree combinations containing all three turfgrass species. Buffalograss best resisted possible root growth inhibition, regardless of tree combination. Further evidence shows that Robinia secondary growth is vulnerable to presence of turfgrass in proximity.

Fine roots constitute a large part of the primary production in northern (arctic and boreal) ecosystems, and are key players in ecosystem fluxes of water, nutrients and carbon. Data on root dynamics are generally rare, especially so in northern ecosystems. However, those ecosystems undergo the most rapid climatic changes on the planet and a profound understanding of form, function and dynamics of roots in such ecosystems is essential. This thesis aimed to advance our knowledge about fine root dynamics in northern ecosystems, with a focus on fine root phenology in natural plant communities and how climate change might alter it. Factors considered included thickness and duration of snow cover, thawing of permafrost, as well as natural gradients in temperature. Experiments and observational studies were located around Abisko (68°21' N, 18°45' E), and in a boreal forest close to Vindeln (64°14'N, 19°46'E), northern Sweden. Root responses included root growth, total root length, and root litter input, always involving seasonal changes therein, measured with minirhizotrons. Root biomass was also determined with destructive soil sampling. Additionally, aboveground response parameters, such as phenology and growth, and environmental parameters, such as air and soil temperatures, were assessed. This thesis reveals that aboveground patterns or responses cannot be directly translated belowground and urges a decoupling of above- and belowground phenology in terrestrial biosphere models. Specifically, root growth occurred outside of the photosynthetically active period of tundra plants. Moreover, patterns observed in arctic and boreal ecosystems diverged from those of temperate systems, and models including root parameters may thus need specific parameterization for northern ecosystems. In addition, this thesis showed that plant communities differ in root properties, and that changes in plant community compositions can thus induce changes in root dynamics and functioning. This underlines the importance of a thorough understanding of root dynamics in different plant community types in order to understand and predict how changes in plant communities in response to climate change will translate into root dynamics. Overall, this thesis describes root dynamics in response to a variety of factors, because a deeper knowledge about root dynamics will enable a better understanding of ecosystem processes, as well as improve model prediction of how northern ecosystems will respond to climate change.

Fine roots constitute a large part of the primary production in northern (arctic and boreal) ecosystems, and are key players in ecosystem fluxes of water, nutrients and carbon. Data on root dynamics are generally rare, especially so in northern ecosystems. However, those ecosystems undergo the most rapid climatic changes on the planet and a profound understanding of form, function and dynamics of roots in such ecosystems is essential. This thesis aimed to advance our knowledge about fine root dynamics in northern ecosystems, with a focus on fine root phenology in natural plant communities and how climate change might alter it. Factors considered included thickness and duration of snow cover, thawing of permafrost, as well as natural gradients in temperature. Experiments and observational studies were located around Abisko (68°21' N, 18°45' E), and in a boreal forest close to Vindeln (64°14'N, 19°46'E), northern Sweden. Root responses included root growth, total root length, and root litter input, always involving seasonal changes therein, measured with minirhizotrons. Root biomass was also determined with destructive soil sampling. Additionally, aboveground response parameters, such as phenology and growth, and environmental parameters, such as air and soil temperatures, were assessed. This thesis reveals that aboveground patterns or responses cannot be directly translated belowground and urges a decoupling of above- and belowground phenology in terrestrial biosphere models. Specifically, root growth occurred outside of the photosynthetically active period of tundra plants. Moreover, patterns observed in arctic and boreal ecosystems diverged from those of temperate systems, and models including root parameters may thus need specific parameterization for northern ecosystems. In addition, this thesis showed that plant communities differ in root properties, and that changes in plant community compositions can thus induce changes in root dynamics and functioning. This underlines the importance of a thorough understanding of root dynamics in different plant community types in order to understand and predict how changes in plant communities in response to climate change will translate into root dynamics. Overall, this thesis describes root dynamics in response to a variety of factors, because a deeper knowledge about root dynamics will enable a better understanding of ecosystem processes, as well as improve model prediction of how northern ecosystems will respond to climate change.

Nitrogen (N) is a central nutrient in cropping systems. However, a considerable N fraction is lost through runoffs and leaching with detrimental consequences for environment and controversial effects on human health. Increasing the plant N uptake by optimizing the degree of root branching for exploring a larger soil volume in search of the mobile nitrate resource may contribute to limit soil leaching and subsequently to rely more efficiently on the soil mineralization and fertilizer inputs. Rapeseed (Brassica napus L.) is a major oil crop that highly depends on N fertilization. This doctoral thesis aims at exploring the diversity of root morphology in recently selected cultivars and in a large set of rapeseed inbred lines, and at understanding the genetic control on root morphology and how it is impacted by N nutrition.Firstly, a panel of twenty-eight European recently selected cultivars of winter oilseed rape were tested in laboratory and field conditions. Upon hydroponic culture, these hybrids showed a great diversity for biomass production and root morphological traits. Differences in root and shoot dry biomasses and lateral root length were mainly explained by the genotype, while differences in primary root length by the nutrition. The cultivars were tested in a pluriannual field trial. The observed variation for yield and seed quality traits attributed to the genotype was more important than the year or the genotype x year interaction effects. The total root length measured in laboratory could predict the proportion of nitrogen taken-up from the field and reallocated to the seeds. The genetic interrelationship between cultivars, established with polymorphic markers, indicated a very narrow genetic base. Positive correlations were found between the genetic distance measures, root morphological trait distances during nitrogen depletion conditions, and agronomic performance. Secondly, three cultivars previously selected from a root morphology screen at a young developmental stage were field tested with two nitrogen applications. The purpose was to examine the relationship between root morphology and Nitrogen Uptake Efficiency (NUpE) and to test the predictiveness of canopy optical indices for seed quality and yield. A tube-rhizotron system was used to incorporate below-ground root growth information. One-meter length clear tubes were installed in soil at an angle of 45°. The root development was followed with a camera at key growth stages in autumn (leaf development) and spring (stem elongation and flowering). Autumn was a critical time window to observe the root development and exploration in deeper horizons (36-48 cm) was faster without any fertilization treatment. Analysis of the rhizotron images was challenging and it was not possible to clearly discriminate between cultivars. Canopy reflectance and leaf optical indices were measured with proximal sensors. The Normalized Difference Vegetation Index (NDVI) was a positive indicator of biomass and seed yield while the Nitrogen Balance Index (NBI) was a positive indicator of above-ground biomass N concentration at flowering and seed N concentration at harvest.Thirdly, the natural variability offered by a diversity set of 392 inbred lines was screened to apprehend the genetic control of root morphology in rapeseed and how it is impacted by nitrogen nutrition. Seedlings grew hydroponically with low (0.2 mM) or elevated (5 mM) nitrate supplies. Low nitrate supply triggered the primary root and lateral root growth, while elevated supply promoted shoot biomass production. A considerable variation degree in the root morphological traits was observed across the diversity set, and there was no trade-off between abundant lateral root branching and shoot biomass production. Root traits were mainly dependent on the genotype and highly heritable. A genome wide association study identified some genomic regions associated with biomass production and root morphological traits. A total of fifty-nine QTLs were identified and thirty of them were integrated into seven clusters on chromosomes A01 and C07. Some candidate genes were identified with Arabidopsis orthologs related to root growth and development, nitrogen nutrition or hormone regulation.This study provides promising routes for redesigning the root system architecture by uncovering nitrogen-interactive genomic regions shaping root morphology. A perspective is to develop genetic markers associated with root morphological traits that could be used for assisted breeding. / Doctorat en Sciences agronomiques et ingénierie biologique / info:eu-repo/semantics/nonPublished