京都大学 / 新制・課程博士 / 博士(医学) / 甲第23076号 / 医博第4703号 / 新制||医||1049(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 花川 隆, 教授 古川 壽亮, 教授 髙橋 良輔 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

PhD (Zoology) / Department of Zoology / The order Rodentia is the most speciose group of mammals with muroids being the most diverse superfamily. Since they are represented in arboreal, semiaquatic, subterranean and terrestrial niches, rodents may exhibit morphological traits reflecting their adaptations to such diverse environments. This thesis focuses on the morphology of the endocranium, auditory bulla and cochlea in three tribes (Otomyini, Taterillini and Gerbillini) representing 10 species of African rodents, concentrating on their variability, function and adaptability, using micro-CT imaging and 3D shape comparative methods. Additionally, variations in cranial size were also studied in respective of global warming and climatic variables. Morphological changes/variations are a result of environmental change, therefore each chapter in this study details the effect of environmental change (in space and time) on different morphological traits i.e. general cranial size (chapter 2), cochlea and auditory bulla (chapter 3) and endocranial size and shape (chapter 4). With chapter 2 dealing specifically with climate change in its strict sense and the remaining two chapters looking at different environmental gradients. Chapter 2 tests the applicability of the “third universal response to warming” (i.e. declining body size) and the Resource Rule in two murid subfamilies, Murinae and Gerbillinae. The study shows that the third response is not as universal as only one species conformed to this response. Further, food availability (Resource Rule) was shown to be the more important factor correlated with body size variations in rodent species than Bergmann’s Rule. Chapter 3 looks at the auditory bulla and cochlea, the morphological traits that play a role in hearing capabilities of rodents. I found, with some exceptions, that bulla and cochlea modifications between species could be explained by environment, phylogeny and/or allometry. In addition, I concluded that true desert adapted laminate-toothed rats and gerbils use both bulla and associated cochlea hypertrophy. Chapter 4 shows larger brain size in Taterillini and two species of Otomyini, with life histories and environment being the most probably factors responsible for xiv this. Using a novel method of diffeomorphism (deformation models), there was more variation in endocranial morphology between the gerbils and laminate-toothed rats than within them with olfactory bulb, paraflocculi, and posterior ventral cortex showing the most variability. Overall, this thesis shows that variations in the morphological traits studied are strongly influenced by the environment and function. / NRF

Using morphometric and cytochemical techniques we have described changes taking place in the fat body cells during three different stages of development. The cell number remains constant at about 2200 cells during larval life and then decreases gradually and continuously throughout metamorphosis and the first 3 days of the adult stage until no more cells can be observed. Cell size increases rapidly during the larval period and decreases steadily during metamorphosis and adult stage. The size of the nuclei increases during the larval instars and decreases during the pupal interval. The change in nuclear size is correlated with the amount of DNA present throughout development implying the nuclear DNA is synthesized during the larval period and degraded gradually during metamorphosis. The cell size changes are due in large part to accumulation or loss of reserve substances: lipid droplets, glycogen deposits and protein granules. During metamorphosis the amount of lipid decreases slightly whereas glycogen experiences two loss cycles. The protein granules in the form of lysosomes continue to increase in amount during the first day of metamorphosis because of a short period of massive autophagy. Then the lysosomes decrease in amount throughout the remainder of metamorphosis. The lysosomes stain positively for lipofuscin.

To characterize the relationship between dispersion-based intra-individual variability (IIVd) in neuropsychological test performance and brain volume among HIV seropositive and seronegative men and to determine the effects of cardiovascular risk and HIV infection on this relationship. Magnetic Resonance Imaging (MRI) was used to acquire high-resolution neuroanatomic data from 147 men age 50 and over, including 80 HIV seropositive (HIV+) and 67 seronegative controls (HIV-) in this cross-sectional cohort study. Voxel Based Morphometry was used to derive volumetric measurements at the level of the individual voxel. These brain structure maps were analyzed using Statistical Parametric Mapping (SPM2). IIVd was measured by computing intra-individual standard deviations (ISD’s) from the standardized performance scores of five neuropsychological tests: Wechsler Memory Scale-III Visual Reproduction I and II, Logical Memory I and II, Wechsler Adult Intelligence Scale-III Letter Number Sequencing. Total gray matter (GM) volume was inversely associated with IIVd. Among all subjects, IIVd -related GM atrophy was observed primarily in: 1) the inferior frontal gyrus bilaterally, the left inferior temporal gyrus extending to the supramarginal gyrus, spanning the lateral sulcus; 2) the right superior parietal lobule and intraparietal sulcus; and, 3) dorsal/ventral regions of the posterior section of the transverse temporal gyrus. HIV status, biological, and cardiovascular disease (CVD) variables were not linked to IIVd -related GM atrophy. IIVd in neuropsychological test performance may be a sensitive marker of cortical integrity in older adults, regardless of HIV infection status or CVD risk factors, and degree of intra-individual variability links with volume loss in specific cortical regions; independent of mean-level performance on neuropsychological tests.

In the present study the species boundaries of the scleractinian coral genus Goniopora from the Saudi Arabian Red Sea were investigated. An integrated morpho-molecular approach was used to better clarify the complex scenario derived from traditional classification efforts based on skeletal morphology. Traditional taxonomy of this genus considers skeletal morphology first and polyp morphology as a secondary discriminating character. This leads to potential complication due to plasticity in skeletal features within a species. To address this issue, molecular analyses of evolutionary relationships between nine traditional morphospecies of Goniopora from the Red Sea were performed and were used to re-evaluate the informativeness of macromorphological and micromorphological features. Between four and six putative molecular lineages were identified within Goniopora samples from the Saudi Arabian Red Sea on the basis of four molecular markers: the mitochondrial intergenic spacer between Cytochrome b and the NADH dehydrogenase subunit 2, the entire nuclear ribosomal internal transcribed spacer region, the ATP synthase subunit β gene, and a portion of the Calmodulin gene. The results were strongly corroborated by three distinct analyses of species delimitation. Subsequent analyses of micromorphological and microstructural skeletal features identified the presence of distinctive characters in each of the molecular clades. Unique in vivo morphologies were associated with the genetic-delimited lineages, further supporting the molecular findings. The proposed re-organization of Goniopora will resolve several taxonomic problems in this genus while reconciling molecular and morphological evidence. Reliable species-level identification of Goniopora spp. can be achieved with polyp morphology under the proposed revision.

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第18845号 / 理博第4103号 / 新制||理||1590(附属図書館) / 31796 / 京都大学大学院理学研究科生物科学専攻 / (主査)教授 濱田 穣, 准教授 平﨑 鋭矢, 教授 岡本 宗裕 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DFAM

京都大学 / 0048 / 新制・論文博士 / 博士(医学) / 乙第13231号 / 論医博第2171号 / 新制||医||1036(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 高橋 淳, 教授 宮本 享, 教授 富樫 かおり / 学位規則第4条第2項該当 / Doctor of Medical Science / Kyoto University / DFAM

Phenotypic plasticity and developmental instability in leaf traits are common in oak species but the role of environmental factors is not well understood. To decipher possible correlations between different leaf traits and effects of the position of leaves within the tree canopy, we quantified the plasticity of three leaf traits of 30 trees of Quercus alba L., Quercus palustris Muench and Quercus velutina Lam. We hypothesized that trees could modify the shape of their leaves for better adaptation to the variable microclimate within the canopy. Our results demonstrated that the south and north outer leaves were significantly smaller, more lobed and denser than those situated in the inner canopy. The order of leaves on the branch accounted for the plasticity of leaf traits in Q. alba only. Plasticity of lobing in Q. alba and Q. velutina depended on the height of the trees. We detected fluctuating asymmetry (FA) in all three species, but the source of variation depended on branch position in Q. velutina only. FA was more pronounced in north-facing leaves. Plasticity of the leaf traits ranged from small to medium. Plasticity of leaf area and leaf mass per area (LMA) depended on the branch position. However, the plasticity of lobation was not affected by the location of a branch within the tree canopy. Quercus alba and Q. palustris had similar plastic responses but the plasticity of Q. velutina was significantly smaller. We concluded that individual plants detect and cope with environmental stress through vegetative organ modification.

Organisms are often exposed to multiple stressors in their natural habitat. While the effects of individual stressors alone are generally well-studied, their combined interactions are often unknown. One such unknown interaction is that between copper, an essential micronutrient that is toxic in high levels, and hypoxia, a commonly experienced environmental stressor. This project sought to examine the effects that copper has on the hypoxic response as well as the combined effects of copper and hypoxia exposure using freshwater-acclimated adult killifish (Fundulus heteroclitus), a model euryhaline teleost. It was found that copper blunts the acute ventilatory response to hypoxia, ammonia, and combined hypoxia and ammonia exposure. Gill morphometry was also examined and it was found that while copper alone has no effect, when combined with hypoxia exposure it eliminates the increase in filament length and cross-sectional area seen when fish were exposed to hypoxia alone. Furthermore, when neuroepithelial cell size was examined, copper decreased cell projection area with or without the combined presence of hypoxia. Taken as a whole, this thesis indicates that copper exposure can significantly and negatively impact the ability of aquatic organisms to mount appropriate physiological responses to hypoxia. / Thesis / Master of Science (MSc)

Caves on carbonate islands are useful indicators of past sea level because cave formation is dependent on sea-level controlled freshwater lens position (flank margin caves), or form in direct contact with coastal processes (sea caves). Sea-level curves present a useful proxy for glacioeustatic and paleoclimate studies, so caves offer useful data. Once a flank margin cave is breached, it may be modified and eroded by waves. This overprinting leads to morphology similar to that of sea caves. While both indicate past sea level, they reveal differing information about the amount of denudation that has occurred to expose them (a paleoclimate indicator), so differentiation of these cave types is important. This study presents some of the first sea cave data from carbonate islands, and makes morphological comparisons between flank margin caves and sea caves from the Bahamas, California, and Maine. Using morphometric techniques, these caves can be distinctly identified.