The EcoR124INT restriction-modification (R-M) system contains the genes HsdS3, HsdM and HsdR. S3 encodes the N-terminal domain of the wild-type S subunit and has been shown to dimerise in solution (Smith et al., 1998). Following purification of the subunits of the EcoR124INT R-M system, complexes of the methyltransferase S3/M and restriction endonuclease S3/M/R were formed and shown to have activity in vitro, methylating and hydrolysing a symmetrical DNA recognition sequence, respectively. The DNA mimic OCR (overcome classical restriction) protein inhibited the methyltransferase activity in vitro, with maximum inhibition at a 1: 2 molar ratio of (S3/M)2 to an ocr dimer. Dynamic light scattering (DLS), sedimentation equilibrium (SE) and sedimentation velocity (SV) experiments showed S3 to exist as a dimer and S11 (the central conserved domain of S) to exist as a tetramer in solution. M was found to be dimeric in solution, whilst the R protein was monomeric. A complex of S3/M was found to have a stoichiometry (S3/M)2 and a complex of S3/M/R had a stoichiometry of S3/M/R1, even when a 2: 1 molar ratio of R to S3/M, was added. Small angle neutron scattering (SANS) experiments provided values for the radius of gyration (Rg), which for S3 was comparable to that calculated for the recently published crystal structure of the S subunit from Methanococcus jannaschii (Kim et al., 2005). These experiments also showed a decrease in the Dmax in the presence of the 30 bp DNA recognition sequence from 200A to 140A, suggesting a similar conformational change in the positioning of the subunits as has been detected for the wild-type M. EcoR124I and a related type 1 1/2 system AhdI. This change following DNA binding was also observed by SV experiments. Furthermore ab initio modelling from the SANS data has provided a low-resolution structure for the EcoR124INT MTase and its complex with DNA.

Les rhabdovirus, dont les virus de la stomatite vésiculaire (VSV) et de la rage (RAV) constituent des prototypes, sont des virus enveloppés dont le génome est constitué d'une seule molécule d'ARN simple brin de polarité négative qui font partie de l'ordre des Mononegavirales (MNV). La machinerie de transcription/réplication de ces virus est constituée de l'ARN génomique et de trois protéines qui sont communes à tous les virus de l'ordre des MNV, la (N) qui encapside le génome viral, la grande sous-unité de l'ARN polymérase ARN dépendante (L) et la phosphoprotéine (P) qui est un cofacteur non-catalytique de la L et sert de chaperonne à la N. Le premier objectif de mon travail de thèse consistait à déterminer la structure cristallographique du domaine de dimérisation de la phosphoprotéine du virus de la rage. La P des rhabdovirus est une protéine modulaire qui contient deux régions intrinsèquement désordonnée, un domaine central responsable la dimérisation et un domaine C-terminal responsable de la fixation sur la matrice N-ARN. Le modèle atomique obtenu à une résolution de 1.5A montre que la structure est très différente de celle du domaine correspondant chez VSV. Le second objectif de mon travail était la caractérisation structurale de la grande sous-unité L de la polymérase du virus de la stomatite vésiculaire. Cette enzyme de 2109,aa, possède six régions conservées. Le domaine conservé III comprend les régions impliquées dans l'activité de polymérisation et les domaines V et VI sont responsables de la formation de la coiffe des ARNm. Plusieurs stratégies ont été envisagées successivement. (1) Sur la base de prédictions de structures secondaires et de prédictions de désordre, nous avons essayé d'exprimer différents fragments en système d'expression bactérien. Les constructions testées se sont avérées insolubles et certaines d'entre elles fixaient GroEL, indiquant un problème de repliement. (2) Nous avons alors essayé d'exprimer la L seule ou en complexe avec la P en système d'expression eucaryote. La purification s'est avérée impossible, la protéine L restant toujours associées à des protéines cellulaires visibles par coloration au bleu de Coommassie. (3) Finalement nous avons réussi à purifier la polymérase à partir de virus entier. La préparation de la polymérase était très homogène et a permis d'entreprendre une caractérisation par microscopie électronique. Une classification d'images a permis de construire un premier modèle à basse résolution. Le modèle révèle la présence d'un domaine annulaire avec plusieurs domaines structurés attachés au coeur de la polymérase. La cryo-microscopie électronique et la tomographie permettront d'obtenir plus de détails sur cette protéine. / Rhabdoviruses, including vesicular stomatitis virus (VSV) and rabies virus (RAV), are enveloped viruses which genome is made of a single molecule of negative-sense RNA and are classified in the order Mononegavirales (MNV). The transcription/replication machinery of these viruses consists of the genomic RNA and of three proteins, which are common to all other viruses of the order MNV, a nucleoprotein (N) that encapsidates the viral genome, a large subunit of the RNA-dependent RNA polymerase (L) and a phosphoprotein (P) that acts as a non-catalytic cofactor of L and a chaperone of N. The first goal of my research project was to determine the crystallographic structure of the dimerization domain of the rabies virus phosphoprotein. The P protein of the rhabdoviruses is a modular protein, which contains two intrinsically disordered regions, a central dimerization domain and a C-terminal domain involved in binding to the N-RNA template. The atomic model obtained at a resolution of 1.5 A showed that the structure is different from that of the corresponding domain of VSV. The second goal was the structural characterization of the large subunit L of VSV polymerase. The enzyme of 2109 aa has six conserved regions. Conserved region III includes the residues involved in the RNA synthesis activity, whereas domains V and VI are involved in mRNA capping formation. Three strategies were successively developed: (1) On the basis of secondary structure and disorder predictions, we tried to express different fragments in bacterial expression systems. These constructions appeared to be insoluble and some of them bound GroEL suggesting a folding problem; (2) We tried to express L alone or co-express it with P in eukaryotic expression system. The purification appeared to be impossible, the L protein always remaining associated with host-cell proteins in amounts detectable by Coommassie staining; (3) We succeeded in purifying the L protein from the virus. The L samples were homogenous and allowed a characterization by electron microscopy. Image classes allowed the reconstruction of a first low-resolution model. This model revealed the presence of a large ring-like domain and several globular domains. Cryo-electron microscopy and tomography should lead to a more detailed description of this protein.

Aluminas have had some form of chemical and industrial use throughout history. For little over a century corundum (α-Al2O3) has been the most widely used and known of the aluminas. The emerging metastable aluminas, including the γ, δ, η, θ, κ, β, and χ polymorphs, have been growing in importance. In particular, γ-Al2O3 has received wide attention, with established use as a catalyst and catalyst support, and growing application in wear abrasives, structural composites, and as part of burner systems in miniature power supplies. It is also growing in importance as part of the feedstock for aluminium production in order to affect both the adsorption of hydrogen fluoride and the feedstock solubility in the electrolytic solution. However, much ambiguity surrounds the precise structure of γ-Al2O3. Without proper knowledge of the structure, understanding the properties, dynamics and applications will always be less than optimal. The aim of this research was to contribute towards settling this ambiguity. This work was achieved through extensive computer simulations of the structure, based on interatomic potentials with refinements of promising structures using density functional theory (DFT), and a wide range of supporting experiments. In addition to providing a more realistic representation of the structure, this research has also served to advance knowledge of the evolution of the structure with changing temperature and make new insights regarding the location of hydrogen in γ-Al2O3. / Both the molecular modelling and Rietveld refinements of neutron diffraction data showed that the traditional cubic spinel-based structure models, based on m Fd3 space group symmetry, do not accurately describe the defect structure of γ-Al2O3. A more accurate description of the structure was provided using supercells of the cubic and tetragonal unit cells with a significant number of cations on c symmetry positions. These c symmetry based structures exhibited diffraction patterns that were characteristic of γ-Al2O3. The first three chapters of this Thesis provide a review of the literature. Chapter One provides a general introduction, describing the uses and importance of the aluminas and the problems associated with determining the structure of γ-Al2O3. Chapter Two details the research that has been conducted on the structure of vi γ-Al2O3 historically. Chapter Three describes the major principles behind the computational methods employed in this research. In Chapter Four, the specific experimental and computational techniques used to investigate the structure of γ-Al2O3 are described. All preparation conditions and parameters used are provided. Chapter Five describes the methodology employed in computational and experimental research. The examination of the ~ 1.47 billion spinel-based structural possibilities of γ-Al2O3, described using supercells, and the selection of ~ 122,000 candidates for computer simulation, is detailed. This chapter also contains a case study of the structure of κ-Al2O3, used to investigate the applicability of applying interatomic potentials to solving complex structures, where many possibilities are involved, and to develop a systematic procedure of computational investigation that could be applied to γ-Al2O3. Chapters Six to Nine present and discuss the results from the experimental studies. / Preliminary heating trials, performed to determine the appropriate preparation conditions for obtaining a highly crystalline boehmite precursor and an appropriate calcination procedure for the systematic study of γ-Al2O3, were presented in Chapter Six. Chapter Seven details the investigation of the structure from a singletemperature case. Several known structural models were investigated, including the possibility of a dual-phase model and the inclusion of hydrogen in the structure. It was demonstrated that an accurate structural model cannot be achieved for γ-Al2O3 if the cations are restricted to spinel positions. It was also found that electron diffraction patterns, typical for γ-Al2O3, could be indexed according to the I41/amd space group, which is a maximal subgroup of m Fd3 . Two models were presented which describe the structure more accurately; Cubic-16c, which describes cubic γ-Al2O3 and Tetragonal-8c, which describes tetragonal γ-Al2O3. The latter model was found to be a better description for the γ-Al2O3 samples studied. Chapter Eight describes the evolution of the structure with changing calcination temperature. Tetragonal γ-Al2O3 was found to be present between 450 and 750 °C. The structure showed a reduction in the tetragonal distortion with increasing temperature but at no stage was cubic γ-Al2O3 obtained. Examination of the progress of cation migration indicates the reduction in the tetragonal nature is due to ordering within inter-skeletal oxygen layers of the unit cell, left over from the breakdown of the hydroxide layers of boehmite when the transformation to γ-Al2O3 occurred. Above 750 °C, δ-Al2O3 was not observed, but a new phase was identified and designated γ.-Al2O3. / The structure of this phase was determined to be a triple cell of γ-Al2O3 and is herein described using the 2 4m P space group. Chapter Nine investigates the presence of hydrogen in the structure of γ-Al2O3. It was concluded that γ-Al2O3 derived from highly crystalline boehmite has a relatively well ordered bulk crystalline structure which contains no interstitial hydrogen and that hydrogen-containing species are located at the surface and within amorphous regions, which are located in the vicinity of pores. Expectedly, the specific surface area was found to decrease with increasing calcination temperature. This trend occurred concurrently with an increase in the mean pore and crystallite size and a reduction in the amount of hydrogen-containing species within the structure. It was also demonstrated that γ-Al2O3 derived from highly crystalline boehmite has a significantly higher surface area than expected, attributed to the presence of nano-pores and closed porosity. The results from the computational study are presented and discussed in Chapter Ten. Optimisation of the spinel-based structural models showed that structures with some non-spinel site occupancy were more energetically favourable. However, none of the structural models exhibited a configuration close to those determined from the experimental studies. Nor did any of the theoretical structures yield a diffraction pattern that was characteristic of γ-Al2O3. This discrepancy between the simulated and real structures means that the spinel-based starting structure models are not close enough to the true structure of γ-Al2O3 to facilitate the derivation of its representative configuration. / Large numbers of structures demonstrate migration of cations to c symmetry positions, providing strong evidence that c symmetry positions are inherent in the structure. This supports the Cubic-16c and Tetragonal-8c structure models presented in Chapter Seven and suggests that these models are universal for crystalline γ-Al2O3. Optimisation of c symmetry based structures, with starting configurations based on the experimental findings, resulted in simulated diffraction patterns that were characteristic of γ-Al2O3.

<p>A Monte Carlo simulation of the Neutron Wall detector system has been performed using Geant4, in order to define optimum conditions for the detection and identification of multiple neutrons. Emphasis was put on studying the scattering of neutrons between different detectors, which is the main source of the apparent increase of the number of detected neutrons. The simulation has been compared with experimental data. The quality of neutron gated γ-ray spectra was improved for both two- and three-neutron evaporation channels. The influence of small amounts of γ rays mis-interpreted as neutrons was investigated. It was found that such γ rays dramatically reduce the quality of neutron gated γ-ray spectra.</p><p>The interaction properties of fast neutrons in a closed-end coaxial and a planar high-purity germanium detector (HPGe) were studied. Digitised waveforms of HPGe preamplifier signals were recorded for time-of-flight separated neutrons and γ rays, emitted by a ²⁵²Cf source. The experimental waveforms from the detectors were compared to simulated pulse shapes. In the analysis, special emphasis was given to the detection of elastically scattered neutrons, which may be an important effect to take into account in future spectrometers based on γ-ray tracking. No differences between neutron and γ-ray induced pulse shapes were found in this work.</p><p>A Monte Carlo simulation of the interactions of fast neutrons in the future 4π γ-ray spectrometer AGATA was also performed, in order to study the influence of neutrons on γ-ray tracking. It was shown that although there is a large probability of detecting neutrons in AGATA, the neutrons decrease the photo-peak efficiency of AGATA by only about 1% for each neutron emitted in coincidence with γ rays. The peak-to-background ratios in γ-ray spectra are, however, reduced to a much larger extent. The possibility of using AGATA as a neutron detector system was also investigated.</p>

A Monte Carlo simulation of the Neutron Wall detector system has been performed using Geant4, in order to define optimum conditions for the detection and identification of multiple neutrons. Emphasis was put on studying the scattering of neutrons between different detectors, which is the main source of the apparent increase of the number of detected neutrons. The simulation has been compared with experimental data. The quality of neutron gated γ-ray spectra was improved for both two- and three-neutron evaporation channels. The influence of small amounts of γ rays mis-interpreted as neutrons was investigated. It was found that such γ rays dramatically reduce the quality of neutron gated γ-ray spectra. The interaction properties of fast neutrons in a closed-end coaxial and a planar high-purity germanium detector (HPGe) were studied. Digitised waveforms of HPGe preamplifier signals were recorded for time-of-flight separated neutrons and γ rays, emitted by a 252Cf source. The experimental waveforms from the detectors were compared to simulated pulse shapes. In the analysis, special emphasis was given to the detection of elastically scattered neutrons, which may be an important effect to take into account in future spectrometers based on γ-ray tracking. No differences between neutron and γ-ray induced pulse shapes were found in this work. A Monte Carlo simulation of the interactions of fast neutrons in the future 4π γ-ray spectrometer AGATA was also performed, in order to study the influence of neutrons on γ-ray tracking. It was shown that although there is a large probability of detecting neutrons in AGATA, the neutrons decrease the photo-peak efficiency of AGATA by only about 1% for each neutron emitted in coincidence with γ rays. The peak-to-background ratios in γ-ray spectra are, however, reduced to a much larger extent. The possibility of using AGATA as a neutron detector system was also investigated.

This work contributes to the structure investigation on the basis of small-angle neutron scattering (SANS). A new analytical scattering function for polydispers precipitates with diffusion zones is presented and used in SANS experiments. For diluted and dense packed systems structure describing parameter values were obtained. These results lead to a deeper understanding of the process of nanocristallization of amorphous alloys. The investigation of SANS on Fe73.5Si15.5B7Cu1Nb3 shows that the Fe3Si type nanocrystals created in the amorphous matrix during annealing are covered by Nb-atoms. The accumulation of Nb-atoms or Nb-B-aggregates acting as inhibitors at the surface of the nanocrystals is assumed to be the basic mechanism controlling the evolution of the precipitates. For the first time this inhibitor-model is shown to be correct without doubts. In the Zr32Ti7.5Al10Cu20Ni8 amorphous alloy the formation of ultrafine nanocystals of about 2-3 nm in diameter was observed. The nanocrystallization starts after ordered clusters achieved particular sizes and a certain packing fraction. This leads to a new model for the microscopic formation procedure of ultrafine nanocrystals in this amorphous alloy. Theoretical models of fractal systems are applied to complicated polydisperse materials. Both the theory for an exact surface fractal of Hermann (1994)and the model for coupled volume and surface fractals in the formulation of Wong (1992) are shown to be applicable. The latter approach is applied to experimental data here for the first time. With computer simulations conditions for scattering experiments were optained therewith predictions about the quality and grade of fractality in real specimens become possible. / Die vorliegende Arbeit ist ein Beitrag zur Strukturaufklärung mittels Neutronen-Kleinwinkel-Streuung (SANS). Es wird eine neu entwickelte analytische Streufunktion für polydisperse Ausscheidungen mit Diffusionszonen genutzt, um SANS Experimente auszuwerten. Sowohl für verdünnte, als auch für dicht gepackte Systeme werden auf diese Weise quantitative Strukturparameter gewonnen. Diese liefern einen Beitrag zum Verständnis des Nanokristallisationsverhaltens amorpher metallischer Gläser. Die Auswertung der Experimente an on Fe73.5Si15.5B7Cu1Nb3 zeigt, dass Fe3Si-artige Nanokristalle, die während der Temperaturbehandlung in der amorphen Matrix entstehen, von Nb-Atomen bedeckt werden. Diese Ansammlung von Nb-Atomen oder von entsprechenden Nb-B-Aggregaten auf der Oberfläche dieser Ausscheidungen hemmt das Größenwachstum der entstehenden Nanokristalle. Dieses Inhibitor-Modell wurde hier erstmals zweifelsfrei bestätigt. In Proben des amorphen metallischen Glases Zr32Ti7.5Al10Cu20Ni8 werden ultrafeine Ausscheidungen mit Durchmessern von 2-3 nm beobachtet. Diese entstehen verzögert nach der Ausprägung dicht gepackter Gebiete mit erhöhter Nahordnungsstruktur. Es wird ein Modell vorgeschlagen, das diesen Prozess erklären kann. Theoretisch diskutierte Modelle für fraktale Systeme werden auf komplizierte polydisperse Materialien angewendet. Sowohl die Formulierung von Hermann (1994) für ein exaktes Oberflächenfraktal, als auch der erstmals auf experimentelle Daten angewendete Ansatz von Wong (1992) für ein gekoppeltes Volumen- und Oberflächenfraktal erweisen sich als praktisch nutzbar. Mittels Computersimulationen wurden Bedingungen abgeleitet, die an Streuexperimente zu stellen sind, damit Aussagen über Qualität und Grad von Fraktalität in realen Proben getroffen werden können.

No description available.

This thesis entails the utilisation of ab initio density functional theory (DFT) in conjunction with neutron and synchrotron spectroscopy to study the mechanical, vibrational, and dielectric response of metal-organic framework (MOF) materials at the molecular level. MOFs are crystalline materials with nanoscale porosity, which have garnered immense scientific and technological interest for a wide variety of innovative engineering applications. One part of the thesis involves using low-frequency lattice vibrations to characterise the various physical motions that are possible for framework materials. These collective modes detected at terahertz (THz) frequencies have been used to reveal a broad range of exciting possibilities. New evidence has been established to demonstrate that THz modes are intrinsically linked to anomalous elasticity underpinning gate-opening and pore-breathing mechanisms, and to shear-induced phase transitions and the onset of structural instability. The phenomenon of molecular rotor mechanisms and trampoline-like motions are also observed, along with the first experimental confirmation of coordinated shear dynamics. Additionally, a new method to characterise the effects of temperature, and hence thermally-induced structural amorphisation is reported. Finally, for the first time, the frequency-dependent (dynamic) dielectric response of MOF materials, across the extended infrared (IR) spectral region was reported. The results were obtained from experimental synchrotron radiation IR reflectivity and DFT to reveal the low-&kcy; dielectric response of MOFs and established structure-property trends that highlight them as promising systems for microelectronic device applications.

La diffusion de neutrons à petits angles (SANS) est une méthode utilisée pour l'étude d'une large variété de particules en solution. Combinée à un marquage isotopique et à la variation de contraste, elle permet d'obtenir des informations structurales uniques sur des complexes biologiques impliquant plusieurs partenaires, la rendant particulièrement intéressante pour l'étude des mécanismes de translocation. Dans les trois grands domaines de la vie, jusqu'à 30% des protéines doivent être sécrétées hors de la cellule ou intégrées dans sa membrane. Ces mécanismes complexes impliquent deux grands chemins de translocation qui dépendent de multiples protéines cytoplasmiques et membranaires.L'Holotranslocon est un large complexe protéique membranaire composé de sept sous-unités : le translocon triméric SecYEG et les sous-unités accessoires SecD-SecF-YidC-YajC. Cet assemblage peut sécréter des protéines vers l'extérieur de la cellule et en intégrer dans la bicouche lipidique. Nous avons utilisé une sélection de méthodes biophysiques pour analyser différentes stratégies de préparation et la diffusion de neutrons pour analyser les caractéristiques structurales de ce complexe. Nous avons étudié l'efficacité des protocoles actuels pour la production d'un échantillon suffisamment concentré et homogène mais aussi la possibilité d'utiliser des Amphipols comme substitut aux détergents classiquement utilisés pour la purification de ce complexe. Nous avons également tenter de deutérer HTL pour étendre les possibilités offertes par le SANS dans ce contexte. Alors que les caractérisations biophysiques utilisées n'ont pas permis d'améliorer les méthodes de préparation actuelles, la diffusion de neutron nous a permis de confirmer la présence de lipides au centre de la structure. Nous avons assuré la fiabilité de cette stratégie pour étudier des complexes bien définis, formés par plusieurs composants. Nous proposons des méthodes alternatives, basées sur la fluorescence ou la génération de lipodisques, pour l'étude de ce système complexe.Nous avons également étudié la protéine tétramérique SecB, une chaperonne moléculaire qui est impliquée dans l'adressage des substrats de translocation aux translocons membranaires. Puisque SecB interagit avec des partenaires cytosoliques et ses propres substrats, nous avons utilisé la diffusion de neutrons ainsi que le marquage au deutérium pour analyser des complexes pertinents dans le processus de translocation et impliquant jusqu'à trois partenaires : SecB, un substrat déplié et l'ATPase SecA. Nous avons utilisé les valeurs de "contrast match point" mesurées pour obtenir des informations sur la stœchiométrie et l'affinité des différents assemblages. L'analyse des rayons de girations a permis de localiser les différents composants au sein de ces complexes. De plus, nous avons montré que SecB s'étend lorsqu'elle reconnait son substrat et nous proposons un modèle fonctionnel, basé sur nos données, pour l'adressage des protéines textit{via} le chemin post-traductionnel.Dans l'optique de diversifier les applications du SANS pour les systèmes biologiques, nous avons étendus les protocoles utilisés pour la production de protéines partiellement deutérées textit{in vivo} aux lipides et acides nucléiques bactériens. Les niveaux de deutération ont été analysés grâce à la diffusion de neutrons, spectrométrie de masse ou résonance magnétique nucléaire. Sur la base de ces données, nous avons extrapolé les niveaux de deutération et "contrast match point" pour chaque type de biomolécule afin de pouvoir prédire les conditions de cultures optimales requises pour atteindre un marquage spécifique. Nous avons, de plus, développé une nouvelle stratégie permettant de marquer sélectivement les protéines tout en conservant un marquage minimal des autres types de molécules. / Small Angle Neutron Scattering (SANS) is a method that is used for the study of a wide range of particles in solution. Combined with isotope labelling and contrast variation approaches, it allows the extraction of unique structural information on biological complexes involving multiple partner molecules, making it a method of interest for the study of protein translocation mechanisms. In all three kingdoms of life, up to 30% of all proteins need to be secreted out of the cell or integrated into its membrane. These complex mechanisms involve two pathways of translocation that rely on multiple cytoplasmic and membrane proteins.The Holotranslocon (HTL) is a large membrane protein complex composed of seven subunits: the core trimeric translocon SecYEG and the accessory subunits SecD-SecF-YidC-YajC. This assembly can secrete proteins out of the cell or integrate them into the lipid bilayer. In this project, a range of biophysical methods and sample preparation strategies have been used to analyse the structural features of this complex by SANS. The efficiency of the current protocols to produce a concentrated and homogeneous sample have been investigated, as well as the use of an amhpipol molecules as a substitute to classical detergents for the purification of this complex. The deuteration of HTL was attempted to expand the capabilities of SANS in this context. While the biophysical characterization methods we used did not allow us to further improve the current preparation protocols, a key result was the fact that SANS confirmed the presence of lipids at the centre of the structure and the reliability of this analysis method for the study well-defined multi-component complexes was tested. Alternative methods for the analyses of this complicated system are proposed, including fluorescence-based assays or lipodisc formation.The tetrameric protein SecB was also studied; SecB is a molecular chaperone that is involved in the delivery of translocation substrates to the translocon. Since SecB interacts with cytosolic partners and its own substrate, SANS and deuterium labelling was used to analyse translocation-relevant complexes involving up to three partners: SecB, an unfolded substrate and the SecA ATPase. The measured contrast match point was used to obtain information on the stoichiometry and affinity of the various assemblies, and the radii of gyration was used to localize the different components within the complexes. It has also been shown that SecB expands upon substrate binding; a new working model for the post-translational targeting pathway has been proposed, based on these data.As a corollary to the work described above, protocols for textit{in vivo} protein deuterium labelling to the deuteration of textit{E. coli} lipids and nucleic acids have been developed and it is hoped that these may be of general value in widening the scope of SANS applications for the study of biological systems. the These approaches were characterized and evaluated by SANS, nuclear magnetic resonance and mass spectrometry. Based on these data, the relevant deuteration levels and contrast match points were extracted for each class of biomolecule so that the optimal culture conditions can be used to achieve a specific level of deuteration. In addition, a new strategy has been developed that allows the selective labeling of proteins while keeping the labelling of other classes of molecules to a minimum within a single culture.

Cette thèse porte sur l'utilisation de plusieurs techniques de diffusion de neutrons polarisés pour la conduite d'expériences de diffraction et de spectroscopie inélastique à haute résolution. Nous décrivons de façon exhaustive l'option à écho de spin neutronique résonant ZETA, installée sur le spectromètre triple axe thermique CRG IN22 à l'Institut Laue Langevin. Grâce à elle, nous étudions la structure nucléaire et la dynamique de spin de plusieurs systèmes modèles. Dans un premier temps, nous nous intéressons à la série BaM2(XO4)2 (M = Co, Ni; X = As, P) dont les membres sont de bons exemples de systèmes magnétiques quasi-bidimensionnels. L'effet de la mise en ordre magnétique sur leurs paramètres de maille est révélé par diffraction de Larmor. De plus, nous montrons que l'évolution thermique de la durée de vie du mode de magnon optique dans BaNi2(PO4)2 est fortement affecté par la présence de défauts dans sa structure. Ensuite, nous abordons le composé à chaînes et échelles de spin 1/2 Sr14Cu24O41. Nous nous focalisons d'abord sur l'étude du pic inélastique associé au gap de spin des échelles et présentons une méthode capable de montrer de façon directe la dégénérescence de la transition concernée. Ensuite, nous évaluons sa largeur énergétique intrinsèque et observons l'effet des différentes mises en ordre de charge sur la structure cristallographique du matériau. Finalement, nous adaptons l'instrumentation disponible pour mener des expériences de réflectométrie résolues en temps, par le biais de la méthode MIEZE, sur une multicouche magnétique pouvant posséder des propriétés intéressante pour des applications en spintronique / This thesis is mainly concerned with the use of several polarized neutron scattering techniques for carrying high resolution diffraction and inelastic spectroscopy experiments. We describe exhaustively our neutron resonant spin-echo option ZETA, installed on the thermal triple-axis spectrometer CRG IN22 at Institut Laue Langevin. Through it, we study the nuclear structure and spin dynamics of several model systems. First, we are interested in the BaM2(XO4)2 (M = Co, Ni; X = As, P)-family which members are good prototypes of quasi-2D magnetic systems. The effect of magnetic ordering on lattice constants is revealed thanks to Larmor diffraction. Moreover, we show that the thermal evolution of optic magnon lifetime in BaNi2(PO4)2 is strongly affected by the presence of defects in its structure. Then, we address the spin-chain and -ladder compound Sr14Cu24O41. We first focus on the study of the inelastic peak associated with the spin gap in the ladders spectrum and introduce a method capable of showing directly the degeneracy of the associated spin transition. We also evaluate its intrinsic linewidth and observe the effect of different charge ordering process on the material crystallographic structure. Ultimately, we adapt our instrumentation to perform time-resolved reflectometry experiments on a magnetic multilayer which can possess interesting properties for spintronics applications, through the so-called MIEZE technique.