Chemical detection, including analysis of gases and liquids, is a large field in environmental research and industry. It requires sensitive, rapid, and inexpensive chemical sensors. Many industrial materials such as coatings and adhesives readily absorb chemical analytes, which may result in changes of their chemical, mechanical, and optical properties. This uptake of volatile organic compounds either from the gas phase or from an aqueous solution into a thin film is frequently accompanied by a change in material refractive index and film thickness. While the undesired swelling of thin film coatings and their refractive index changes affect their use in harsh environments, the sensitivity of some polymers to solvent vapours can also be exploited for sensing applications. In this project, a method is reported for real-time monitoring of vapour uptake by simultaneous detection of the refractive index, n, and thickness, d, of thin transparent films with a precision of 10-4 for refractive index and 100 nm for thickness. The setup combines a total internal reflection refractometer with an interferometric imaging method. Two setups using 1550 nm and 635 nm measurement wavelengths were developed, with a detection rate of 1 second per measurement. Two processing methods using a fast Fourier transform algorithm to calculate n and d are applied to the experimental results and compared. Both methods could extract n and d simultaneously from each image captured by the refractometer. The results show that the setup is capable of monitoring film RI and thickness change in real-time. The partitioning of volatile organic compound vapours into polydimethylsiloxane (PDMS) and PDMS-polydiphenylsiloxane (PDPS) copolymers is described. The system is also suited for characterization of other solid and liquid films like SU-8 photoresist and crude oil. It shows great potential in commercial applications of thin film characterization. / Thesis (Master, Electrical & Computer Engineering) -- Queen's University, 2013-09-19 22:21:38.836

Petrol attendants are exposed to petrol volatile organic compounds (VOCs) which may have genotoxic and carcinogenic effects. The single cell gel electrophoresis assay (comet assay) is a method highly sensitive to DNA damage induced by environmental and occupational exposure to carcinogenic and mutagenic agents. The aim of this study was to evaluate the level of exposure of petrol attendants to petrol VOCs and also to determine their effect on DNA damage and repair in lymphocytes of African petrol attendants. The exposed group consisted of 20 subjects, randomly selected from three petrol stations. A control group of 20 unexposed subjects was also chosen and matched for age and smoking habits with the exposed group. Sorbent tubes were used to assess personal exposure of petrol attendants. The comet assay was used to investigate the basal DNA damage and repair capacity in isolated lymphocytes of petrol attendants and control subjects. Blood samples were taken from the petrol attendants at the end of their 8 hour working shift and also from the control subjects. The petrol attendants were found to be exposed to levels of petrol VOCs lower than the occupational exposure limit (OEL) for constituent chemicals. A significant relationship was found between the volume of petrol sold during the shift and the average concentrations of benzene, toluene and the total VOCs measured. However, relative humidity had a negative correlation with the average concentrations of benzene, toluene, xylene and the total VOCs. Significantly higher basal DNA damage was observed with the exposed group compared to the control group. The period of exposure influenced the level of DNA damage and the calculated repair capacity. Smoking and age had a significant influence on the level of DNA damage. DNA repair capacity was delayed in smokers of both exposed and non-exposed group. / Thesis (M.Sc. (Occupational Hygiene))--North-West University, Potchefstroom Campus, 2008.

Biogenic volatile organic compounds (BVOC) are a wide-ranging group of trace gas components in the atmosphere which are emitted naturally from Earth’s surface. It is now recognised that biogenically sourced VOCs are far more significant on a global scale than those from anthropogenic sources, with up to 10 times greater emissions. Very few field-based studies of fluxes from plant canopies have been undertaken, particularly for non-terpenoid compounds. This thesis presents mixing ratio and flux measurements of BVOC from a range of temperate plant canopies: Douglas fir, short-rotation coppice willow, Miscanthus and mixed peatland vegetation. The virtual disjunct eddy covariance technique (vDEC) using a proton transfer reaction mass spectrometer (PTR-MS) as a fast VOC sensor was used for all measurements except for peatlands, where grab samples were collected on adsorbent sampling tubes for later chromatographic analysis. The PTR-MS was also utilised for measuring the rate of degradation of VOCs during laboratory chamber experiments. Mixing ratios and fluxes of VOCs measured within and above a Douglas fir forest were the first canopy-scale measurements for this species. Fluxes of monoterpenes were comparable to previous studies while isoprene was also detected (standard emissions factors up to 1.15 μg gdw -1 h-1 and 0.18 μg gdw -1 h-1, respectively). Emissions of oxygenated VOCs were also found to be significant, highlighting the importance of quantifying a wider variety of VOCs from biogenic sources, other than isoprene and monoterpenes. Results for bioenergy crops Miscanthus and willow showed that willow was a high isoprene emitter (20 μg gdw -1 h-1), but no measureable VOCs were detected from Miscanthus. This indicates that future expansion of bioenergy crops, and hence species selection, should take resultant air quality and human health impacts – due to changing VOC emissions – into account. Fluxes of BVOC from a Scottish peatland are the first reported measurements for this ecosystem in a temperate climate. Additionally, to assess the impact of nitrogen deposition on VOC fluxes, BVOC measurements were taken from sample plots in a pre-existing, long-term field manipulation study to assess impacts of wet nitrate or ammonium deposition on peatland. The peatland was found to be a significant source of isoprene and monoterpenes (590 and 1.5 μg m-2 h-1 respectively) and there was evidence that emissions were affected by wet nitrogen treatment. Isoprene emissions were reduced by both nitrate and ammonium treatment, while nitrate increased β- pinene fluxes. Increasing atmospheric nitrogen concentrations are therefore predicted to have an impact on VOC emission. Chamber studies showed that the rate of loss of α-pinene from the gas-phase during oxidation – and hence potential formation of secondary organic aerosol (SOA) – decreased with increasing isoprene mixing ratio. This was not observed for limonene. These results show that as isoprene mixing ratios increase with increasing global temperatures, negative feedback on radiative forcing from SOA particles may be suppressed. Results from this thesis provide valuable experimental data for a range of temperate plant canopies, which will help constrain modelled predictions of future VOC emissions. Additionally, the importance of understanding the effects of land use and environmental change on VOC emissions was demonstrated.

There are few published direct measurements of the atmosphere-surface exchange of volatile organic compounds (VOCs), particularly for biogenic VOCs (BVOCs). Global modelling of atmospheric chemistry and transport of BVOCs has large uncertainties due to the very small number of measurements in tropical regions, which are responsible for half the global BVOC emissions. This thesis presents direct measurements of concentrations and ecosystem fluxes of BVOCs in different regions (Tropics, Mediterranean) using the approach of virtual disjunct eddy covariance (vDEC) combined with proton transfer reaction mass spectrometry (PTR-MS) – a real-time BVOC sensor. The field measurements also included methodological developments of the vDEC/PTR-MS approach, which will be of value to the wider flux measurement community. A novel approach to determining the lag time between the vertical wind measurement and the air concentration measurement has been developed that will greatly reduce the uncertainty in the derived flux measurements. In the laboratory, the selectivity of PTR-MS was investigated by designing an alternating drift-voltage mode (AD-PTR-MS) to discriminate between structural isomers detected at the same m/z channel, with monoterpenes used as model compounds. The results of the measurements, particularly from the rainforest and oil palm plantations in Borneo, are novel and therefore provide important experimental constraints on models of atmospheric emissions, chemistry and transport. For example, although parameters which work reasonably well can be derived for model algorithms for the emission of isoprene from the rainforest, their performance over oil palms was less good, because of circadian controls of emissions from oil palms. However, the larger problem is the measured basal emission rates (BERs) which are significantly smaller than those used by default in the global MEGAN model. Another novel finding was the high deposition velocities of MVK and MACR (isoprene first order oxidation products) which at the oil palm plantation commonly exceeded 1 cm s-1; this result has implications for atmospheric modelling. The successful field results relied on significant developments in software for data acquisition and processing, and operational optimisation of the PTR-MS instruments in the extreme humidity encountered during the fieldwork in Borneo.

Volatile organic compounds (VOCs) are organic chemicals typically characterized as having low molecular weight, low solubility in water, and high vapor pressure. Consequently, they readily evaporate from liquid to the gaseous phase at standard temperature and pressure. VOCs are produced by many microorganisms as a result of both uninduced and induced metabolic pathways. Volatile-based microbial inhibition in environments such as soil is well founded, with numerous antimicrobial VOCs and formulations having been identified. Inhibitory VOCs are of particular interest as microbial control agents, as low concentrations of gaseous VOCs have been observed to elicit significant antimicrobial effects. It is believed that this contact-independent antagonism may present unique advantages over traditional microbial control methods, particularly where contact-dependent treatment methods are either impractical or inconvenient. This method may be of particular benefit for managing infections where disease may become pervasive in the population, such as with white-nose syndrome (WNS) among bats. A list of potential antifungal compounds and formulations was compiled by referencing the scientific literature. Screening of compounds and formulations was conducted through toxicity analyses and antimicrobial susceptibility testing for the in vitro ability of VOCs and formulations to inhibit growth of select pathogenic fungi. A dispersal system was developed that entailed electrical circuit and software engineering as well as quantitative analysis to validate consistent and accurate dispersal of potential treatment compounds and formulations. Successful completion of these goals culminated in exposure trials involving live bats to determine any significant toxicological effects. Ex and in situ treatment trials were conducted to determine efficacy of promoting the reduction of disease severity and increasing survivorship of infected bat populations. The identification of volatile-based inhibitory compounds, in conjunction with a novel method for accurate and automated delivery, could prove a promising treatment and prophylactic in combatting microbial pathogenesis and contamination.

Les analyses physico-chimiques des arômes du vin prennent aujourd’hui un essor considérable pour faciliter la prise de décision des professionnels de la vigne et du vin. Des analyses performantes, pour un certain nombre de molécules parmi les plus pertinentes, ont été développées (GC-MS, LC-MS). Cependant les techniques utilisées ne sont pas facilement transposables au sein des exploitations. L’objectif de cette thèse est donc de proposer un nouveau type de dosage peu onéreux et simple à mettre en œuvre. La technique envisagée est le dosage immunologique (tests ELISA) qui permet, pour quelques Euros, de doser directement sur le terrain les molécules pertinentes sans préparation préalable des échantillons. Les molécules visées (alkylméthoxypyrazines et précurseurs cystéinylés de thiols volatiles) sont présentes dans les vins de Cabernet Sauvignon et de Sauvignon blanc. / Analytical methods for the detection and quantification of wines aroma typically utilise HPLC-MS or GC-MS. The methods require some isolation and concentration step preceding the analysis. Enzyme-linked immunosorbent assays (ELISAs) are becoming either alternative complementary analytical tools to conventional methods because of their rapidity, sensitivity, selectivity, and low cost. In this Thesis, the applicability of ELISAs for detection and quantification of precursors of volatile thiols and alkylmethoxypyrazines, which have been isolated from wines, made from Cabernet Sauvignon or Sauvignon Blanc, are described.

Les réactions d'oxydation impliquant les composés phénoliques semblent induire des modifications non négligeables du profil chimique et sensoriel des vins. Les travaux concernent l’étude des mécanismes réactionnels impliquant certains thiols volatils, contributeurs de l’arôme distinctif et de la complexité des vins des différents cépages avec les composés phénoliques oxydés des vins blancs, principalement les flavan-3-ols. En solution modèle de composition proche du vin, une réactivité différente des thiols volatils selon leur nature chimique vis à vis des formes oxydées des flavan-3-ols a été établie. La synthèse et la caractérisation des adduits par RMN entre les principaux composés phénoliques des moûts et des vins blancs et le 3-sulfanylhexanol, présentant des nuances d’agrumes, a ensuite été réalisée en conditions d’oxydation chimique et enzymatique. La suivi cinétique de la formation des adduits par CLHP-ESI-SM a permis de mettre en évidence une réactivité du thiol spécifique vis à vis d’un substrat polyphénolique, d’établir le rôle catalytique des métaux (Fe2+) et la capacité antioxydante du dioxyde de soufre vis à vis de ces mécanismes réactionnels. La compréhension de mécanismes fondamentaux de la réactivité de la (+)-catéchine et de la (-)-épicatéchine en conditions œnologiques avec les thiols volatils nous a permis de décliner les travaux à l’étude de l’influence de la présence des flavan-3-ols au cours de la vinification et de l’élevage des vins sur ces composants de l’arôme des vins blancs. / Oxidation reactions involving phenolics might change wines chemical and sensory profile. The present work concern the study of reactional mechanisms implying certain volatile thiols, responsible of distinctiveness and complexity of various wines, with white wines oxidized phenolic compounds, mainly flavan-3-ols. In a model wine solution, a different volatile thiol reactivity pattern according to their chemical nature with respect to oxidized flavan-3-ols forms was established. The adducts synthesis and characterization by NMR between the principal white musts and wines phenolic compounds and the 3-sulfanylhexanol, presenting citrus fruits nuances, were carried out under chemical and enzymatic oxidation conditions. Their formation monitoring by HPLC-ESI-MS highlighted a specific reactivity of thiol with polyphenolic substrate and established the catalytic role of metals (Fe2+) as well as, the antioxidant effect of sulphur dioxide into these mechanisms. The comprehension of fundamental mechanisms for the reactivity of (+)-catechin and of (-)-epicatechin with volatile thiols in oenological conditions enabled us to elucidate the influence of flavan-3-ols into white wines aroma compounds during wine making and ageing.

Trichoderma species are soil-borne filamentous fungi widely utilized for their many plant health benefits, such as conferring improved growth, disease resistance and abiotic stress tolerance to their hosts. Many Trichoderma species are able to produce the auxin phytohormone indole-3-acetic acid (IAA), and its production has been suggested to promote root growth. Here we show that the production of IAA is strain dependent and diverse external stimuli are associated with its production. In in vitro assays, Arabidopsis primary root length was negatively affected by the interaction with some Trichoderma strains. In soil experiments, a continuum effect on plant growth was shown and this was also strain dependent. In plate assays, some strains of Trichoderma spp. inhibited the expression of the auxin reporter gene DR5 in Arabidopsis primary roots but not secondary roots. When Trichoderma spp. and A. thaliana were physically separated, enhancement of both shoot and root biomass, increased root production and chlorophyll content were observed, which strongly suggested that volatile production by the fungus influenced the parameters analyzed. Trichoderma strains T. virens Gv29.8, T. atroviride IMI206040, T. sp. "atroviride B" LU132, and T. asperellum LU1370 were demonstrated to promote plant growth through volatile production. However, contrasting differences were observed with LU1370 which had a negative effect on plant growth in soil but a positive effect in plate assays. Altogether our results suggest that the mechanisms and molecules involved in plant growth promotion by Trichoderma spp. are multivariable and are affected by the environmental conditions.

Aerosols play important roles in atmospheric and environmental processes. Not only do they impact human health, they also affect visibility and climate. Despite recent advances made to under their sources and fate, there remains a limited understanding of the mechanisms that lead to the formation of aerosols and their ultimate fate in the atmosphere. These knowledge gaps provide the crux of the research reported herein, which has focused on identifying novel sources of atmospheric aerosol, characterizing its physical and optical properties, and rationalizing these properties using an in-depth knowledge of the molecular level mechanisms that led to its formation. Upon mowing, turfgrasses emit large amounts of green leaf volatiles which can then be oxidized by ozone to form SOA. Overall, the mowing of lawns has the potential to contribute nearly 50 µg SOA per square meter of lawn mowed. This SOA contribution is on the same order of magnitude as other predominant SOA sources (isoprene, monoterpenes, sesquiterpenes). Turfgrasses represent an interesting and potentially meaningful SOA source because they contribute to SOA and also because they cover large land areas in close proximity to oxidant sources. Another related SOA precursor is sugarcane, which is in the same family as turfgrass and is among the largest agricultural crops worldwide. Globally, the ozonolysis of sugarcane has the potential to contribute 16 Mg SOA to the atmosphere, compared to global estimates of SOA loading that range from 12-70 Tg SOA. In order to fully understand the role of atmospheric SOA on the radiative budget (and therefore climate), it is also important to understand its optical properties; its ability to absorb vs scatter light. Turfgrass and sugarcane produced SOA that was weakly absorbing while its scatter efficiency was wavelength and size-dependent. Interestingly, SOA formed under both dry (10% RH) and wet (70% RH) conditions had the same bulk chemical properties (O:C), yet significantly different optical properties, which was attributed to differences in molecular-level composition. The work presented herein represents a unique, inclusive study of SOA precursors. A complete understanding of the chemistry leading to SOA formation is used to understand its physical and optical properties and evaluate these large-scale effects of SOA from these precursors.

Organic aerosol (OA) is a ubiquitous component of atmospheric particulate that influences both human health and global climate. A large fraction of OA is secondary in nature (SOA), being produced by oxidation of volatile organic compounds (VOCs) emitted by biogenic and anthropogenic sources. Despite the integral role of SOA in atmospheric processes, there remains a limited scientific understanding of the chemical and physical changes induced in SOA as it ages in the atmosphere. This thesis describes work done to increase the knowledge of processes and properties of atmospherically relevant SOA. In the work presented in this thesis, I have worked on improving an existing innovative, soft ionization aerosol mass spectrometer and utilized it to establish chemical mechanisms for oxidation of atmospherically relevant organic precursors (i.e., Green Leaf Volatiles). I discovered that SOA formation from cis-3-hexen-1-ol is dominated by oligomer and higher molecular weight products, whereas the acetate functionality in cis-3-hexenylacetate inhibited oligomer formation, resulting in SOA that is dominated by low molecular weight products. One of the most important factors contributing to uncertainties in our estimations of SOA mass in the atmosphere, remains our basic assumption that atmospheric SOA is liquid-like, which we have found to be untrue. Hence, I developed a methodology to estimate the phase state of SOA and identified new parameters that can have significant influence on the phase state of atmospheric aerosol. This simplified method eliminates the need for a Scanning Mobility Particle Sizer (SMPS) and directly measures Bounce Factor (BF) of polydisperse SOA using only one multi-stage cascade Electrostatic Low Pressure Impactor (ELPI). The novel method allows for the real time determination of SOA phase state, permitting studies of the relationship between SOA phase, oxidative formation and chemical aging in the atmosphere. I demonstrated that SOA mass loading (CSOA) influences the phase state significantly. Results show that under nominally identical conditions, the maximum BF decreases by approximately 30% at higher CSOA and suggests that extrapolation of experiments not conducted at atmospherically relevant SOA levels to simulate the chemical properties may not yield results that are relevant to our natural environment. My work has provided a better understanding of the mechanisms of aerosol formation at atmospheric concentrations, which is necessary to understand its physical properties. This improved understanding is fundamental to accurately model aerosol formation in the atmosphere, and subsequently evaluate their large-scale effect on human health and environment.