Master of Science / Department of Animal Sciences and Industry / Cassandra Jones / Three experiments were conducted to analyze the average mycotoxin concentration that may be reduced by cleaning corn, and to determine how removing broken kernels may affect nursery pig growth performance. A fourth and fifth experiment evaluated pellet processing parameters and their effects on gelatinized starch, phytase stability, pellet quality, and nursery pig growth performance. In Exp. 1 and 2, corn was divided into twenty 150 kg runs then cleaned by mechanical sieving. Run were randomly assigned to 1 of 4 experimental treatments: 1) no screen 2) 12.7 mm screen, 3) 4.8 mm screen, and 4) 12.7 + 4.8-mm screen. Across both experiments, cleaning reduced (P < 0.05) aflatoxin and fumonisin concentration by an average of 26% and 42.5%, respectively, compared to the original uncleaned corn level. In Exp. 3, 360 nursery pigs were evaluated to determine the impact of cleaning or pelleting on growth performance. Treatments were arranged in a 2 × 3 factorial with corn type (uncleaned vs. cleaned) and feed form (mash vs. pelleted from either mill A or B). Neither cleaning corn nor pellet mill type affected (P > 0.19) nursery pig growth performance. Pelleting improved (P < 0.0001) G:F by 7.6% compared to mash diets. This improvement in G:F is consistent when pelleting diets, however pellet processing parameters can influence this improvement percentage. For these reasons, Exp. 4 was a 3 × 4 factorial design with 3 pellet mills (model 3016-4, 1000 HD, or CL-5, California Pellet Mill Co., Crawfordsville, IN), that produced samples collected at 4 locations (initial, post-conditioner, post-die, or post-cooler). Across each pellet mill, the greatest gelatinized starch increase (P < 0.05) was found post-pellet die, while phytase stability decreased (P < 0.05) by 70% after conditioning feed to 85˚C. This decrease led to substituting phytase in the diet for other sources of phosphorus for Exp. 5, which was a 2 × 3 factorial design plus a control, with pellet diameter (4.0 or 5.2 mm), conditioning temperature (low, medium, or high), and mash, created seven experimental treatments. Overall, neither the pellet diameter × conditioning temperature interaction, nor the main effects, affected (P > 0.06) nursery pig growth performance, even though pellet quality improved (P < 0.0001) when increasing conditioning temperature. These data suggest that cleaning is an effective method to legally reduce aflatoxin and fumonisin concentration, and that increasing conditioning temperature improves pellet quality, but neither impacts nursery pig growth performance.

Master of Science / Department of Animal Sciences and Industry / Joel DeRouchey / Jason Woodworth / Two experiments using a total of 646 nursery pigs were used to determine the effects of increasing phytase on nursery pig growth performance and bone ash characteristics. Two experiments using a total of 821 sows were used to determine the impact of increasing standardized ileal digestible (SID) lysine (Lys) in lactating sows. Experiment 1 determined the available phosphorus (aP) release of Natuphos E 5,000 G phytase in nursery pigs. Increasing phytase from 0 to 1,000 FTU/kg in phosphorus deficient diets improved nursery pig performance and bone ash characteristics. Using percentage bone ash and formulated phytase concentrations, an equation was developed to predict aP release up to 1,000 FTU/kg of Natuphos E phytase. Experiment 2 was conducted to determine the effect of Superdosing Natuphos E 5,000 G phytase on nursery pig performance and bone ash characteristics. Increasing phytase in diets marginal in P improved pig performance and bone ash values. Increasing phytase in P sufficient diets improved bone ash percent and tended to improve feed efficiency. Experiments 3 and 4 determined the impacts of increasing SID Lys in primiparous and multiparous lactating sows and their litters. In Exp. 3, increasing SID Lys above 0.80% in primiparous sows decreased backfat loss, but had no effect on sow BW loss, ADFI or litter gain. Conception rate at d 30 and percentage born alive tended to improve at 0.95% SID Lys. In Exp. 4 with mixed parity sows, increasing SID Lys to 1.05% increased sow weaning BW, litter gain, and reduced weight loss in lactation. Sow backfat loss increased as SID Lys increased from 0.75 to 1.20%, however loin eye depth loss was reduced as SID Lys increased. Percentage of females bred by d 7 after weaning was improved in primiparous females with increasing SID Lys, however no difference was observed in multiparous sows.

Master of Science / Department of Animal Sciences and Industry / Joel DeRouchey / Michael Tokach / Six experiments using a total of 2,974 nursery pigs were used to determine the effects of monosodium glutamate (MSG) and amino acids (AA) on nursery pig growth performance. Experiments 1 and 2 evaluated increasing dietary MSG for nursery pigs. Increasing dietary MSG up to 2% without balancing for sodium and chloride content decreased nursery pig performance, and feeding sodium levels equivalent to 1% MSG also decreased performance. When sodium and chloride were balanced, there were marginal effects of increasing dietary MSG on pig performance. Experiment 3 was conducted to determine the standardized ileal digestible (SID) lysine (Lys) requirement for pigs weighing 7- to 11- kg. The SID Lys requirement was estimated to be 1.45% and greater than 1.60% depending on the statistical model applied for both ADG and G:F. This experiment served to validate the SID Lys requirement for use in formulating diets for the subsequent experiments. Experiment 4 evaluated increasing SID valine (Val) to Lys ratio for nursery pigs weighing 7- to 10- kg. A SID Val:Lys ratio of 62.9% optimized ADG. Maximum feed efficiency (G:F) was captured using 71.7% SID Val:Lys ratio, however, 99% of maximum was achieved with SID Val at 64.4% of Lys. For ADFI, maximum performance was at 74% SID Val:Lys ratio, with 99% of maximum intake achieved at 68%. Experiments 5 and 6 investigated increasing SID isoleucine (Ile) to Lys ratio for 6- to 11- kg pigs. When ADG and ADFI were modeled, broken-line models reported maxima of 52.0% Ile:Lys ratio while quadratic models were as high as 64% of Lys.

DL-Methionine (Met) has been conventionally used in swine diets with assumption of similar bioefficacy with L-Met. However, because L-Met is the form that is utilized by animals for protein synthesis, L-Met could, theoretically, be more available. Four experiments were conducted to evaluate L-Met bioavailability in nursery pigs with 21-day growth trials. A total of 105,105,112 and 84 crossbred pigs were used in Exp. 1, 2, 3 and 4, respectively. Each experiment had a low Met basal diet and 3 levels of the Met sources (DL-Met and L-Met). In addition to the basal diet, supplementation levels were 0.053%, 0.107% and 0.160% in Exp. 1, 0.040%, 0.080% and 0.120% in Exp. 2, 0.033%, 0.067% and 0.100% in Exp.3, 0.040%, 0.080% and 0.120% in Exp. 4. Body weight (BW), average daily gain (ADG), average daily feed intake (ADFI), gain: feed (G:F) were measured and plasma urea nitrogen (PUN) was analyzed in blood samples weekly. In Exp. 3 and 4, preference studies were conducted with the basal diet and the second highest level of each Met source. When additional DL-Met or L-Met were supplemented to the basal diet, BW, ADG, ADFI, and G:F ratio increased (P < 0.05). In the comparison between the DL-Met and L-Met diets in Exp. 1, pigs in the L-Met group had greater ADG and G:F ratios in the d 0-7 (P < 0.05) period than those in the DL-Met group. However, there were no differences for the overall experimental period. In Exp. 2, pigs in the DL-Met group had greater BW (P < 0.05), ADG (P < 0.05) and ADFI (P < 0.05) than those in the L-Met group for the overall period whereas no differences were observed in G:F ratios and PUN concentrations. In Exp. 3 and 4, there were no differences in BW, ADG, ADFI, G:F ratios or PUN concentrations between L-Met and DL-Met groups for the overall period. There was no preference exhibited for either the DL-Met or L-Met diet. In the results of relative bioavailability of L-Met to DL-Met, the values was 111.1% for d 0-14 based on the estimation by ADG in Exp. 1; L-Met bioavailability was lower than DL-Met based on all response measures in Exp. 2. However, in Exp. 3, relative bioavailability of L-Met to DL-Met was 100.4, 147.3, and 104.1% for d 0-14 ADG, G:F ratio and PUN concentrations. In Exp 4, the relative bioavailability of L-Met was 92.9, 139.4 and 70.4% for d 0-14 ADG, G:F ratio and PUN concentrations. In conclusion, using L-Met in the nursery diet demonstrated no consistent beneficial effect on ADG, G:F ratio or relative bioavailability compared to conventional DL-Met.

Master of Science / Department of Animal Sciences and Industry / Joel DeRouchey / Thirteen experiments using a total of 7,589 nursery and finishing pigs were conducted to evaluate the effects of deoxynivalenol (DON), feed additives and processing conditions on nursery pig growth performance. In addition, feed withdrawal and diet blending were evaluated in finishing pigs. Experiment 1 tested 3 feed additives in DON-contaminated diets with only Defusion Plus improving performance. Experiment 2 evaluated Biofix in both low- and high-DON diets and showed no effects on growth. Experiments 3 and 4 further evaluated levels of Defusion and the effects of pelleting and supplemental nutrients in DON-contaminated diets. Defusion improved growth in low-DON diets, but had variable effects in high DON diets. Pelleting DON-contaminated diets resulted in comparable growth to pigs fed positive control diets in meal form. In Exp. 5 and 6, pilot studies evaluated DON-detoxification using sodium metabisulfite (SMB) with hydrothermal treatment in both an autoclave and a pellet mill. These conditions reduced analyzed DON by as much as 89 and 75% for the autoclave and pellet mill, respectively. In Exp. 7 and 8, pelleting DON-contaminated diets with SMB improved growth. Experiments 9 and 10 evaluated feed-withdrawal time on carcass composition and economic returns. These experiments showed that pre-slaughter fasting for up to 36 h prior can be used to avoid weight discounts in heavyweight pigs without negatively impacting carcass composition and maintaining overall revenue. However, these advantages come with a potential reduction in carcass weight and increased incidence of leaking ingesta, which can result in condemned heads. Experiments 11, 12, and 13 compared phase-feeding to blending diets using an automated feed delivery system. These studies showed that corn-supplement blending is not economical and feeding diets blended to a Lys curve results in lower feed costs compared to phase-feeding, but due to reductions in growth and carcass weight, these savings do not translate into higher income over feed cost. Finally, Exp. 13 showed that over- and under-budgeting situations do not significantly influence overall returns, but pigs fed under-budgeted diets performed more closely to those fed correctly estimated feed budgets.

Master of Science / Department of Animal Sciences and Industry / Jim Nelssen / Seven experiments using a total of 3,251 preweaned pigs, nursery pigs, and sows were used to determine the effects of: 1) supplemental vitamin D[subscript]3 on suckling and nursery pig growth, and maternal performance, and 2) high sulfate water, dietary zeolite and humic substance on nursery pig performance. Also, a web-based survey was developed to question pork producers and advisors of the swine industry on their knowledge of feed efficiency. Experiment 1 tested an oral dose of either; none, 40,000 or 80,000 IU vitamin D[subscript]3 given to pigs 24 to 48 h after farrowing. No differences in growth performance or bone mineralization were observed, but vitamin D[subscript]3 supplementation increased serum 25(OH)D[subscript]3 on d 10, 20, and 30, but returned to control values by d 52. Experiments 2 and 3 evaluated an oral dose of vitamin D[subscript]3 to pigs just before weaning, as well as added D[subscript]3 in nursery diets and in drinking water. There were no effects on growth performance; however, serum 25(OH)D[subscript]3 increased with all sources of vitamin D[subscript]3 supplementation. Experiment 4 evaluated if pigs had a preference to 1 of 3 dietary concentrations of vitamin D[subscript]3. Pigs ate less feed from diets containing very high levels of vitamin D[subscript]3 compared to commonly supplemented levels. Experiment 5 evaluated 3 levels of vitamin D[subscript]3 in sow diets. There were no effects on sow productivity, subsequent pig performance, or piglet bone ash content. However, increasing vitamin D[subscript]3 increased sow serum 25(OH)D[subscript]3, milk vitamin D, and pig serum 25(OH)D[subscript]3. Experiment 6 and 7 evaluated the effects of dietary zeolite and humic substances in nursery pigs drinking high sulfate water. Ultimately, pigs drinking high sulfate water had increased fecal moisture content and decreased growth performance, and feed additives evaluated were ineffective in ameliorating these negative effects. Finally, data collected from the feed efficiency survey suggest that there are knowledge gaps about practices that effect feed efficiency. Results from this survey will help extension educators better target specific industry segments with current information and provide more specific areas of future research where lack of information has been identified.

The objectives of this study were to investigate the long-term effects of feeding increasing supplemental levels (20, 120, or 220 mg/kg) of dietary copper (Cu) as tribasic copper chloride (TBCC) or copper sulfate (CuSO4) on performance, antioxidant status, nutrient digestibility, and trace mineral deposition of sows and piglets; as well as to assess nursery dietary Cu levels on growth performance and response to immunological challenge in nursery pigs from sows fed either high or low Cu diets. In the long-term sow experiment, sows fed TBCC diets had greater adjusted weaning weight for litter and piglet (P < 0.10), as well as adjusted litter and piglet weight gain (P < 0.10) when compared to sows that received CuSO4 diets. Increasing dietary Cu level linearly increased live born piglet weight (P = 0.06). Sows fed TBCC diets had lower apparent total tract digestibility (ATTD) of ether extract (P = 0.01) during late gestation, but greater ATTD of dry matter, nitrogen, and phosphorous during lactation (P < 0.05). Increasing Cu levels linearly increased dry matter digestibility in lactating sows (P = 0.02). Milk from sows fed TBCC diets had a greater concentration of protein (P = 0.02) than that from sows fed CuSO4 diets. Increasing Cu levels increased levels of milk fat and Cu (linear, P < 0.05); but linearly decreased lactose and Zn levels (P < 0.05). Lactating sows fed TBCC diets had a greater activity of Cu/Zn superoxide dismutase (SOD) and ceruloplasmin in serum than those fed CuSO4 diets (P < 0.05). Increasing dietary Cu levels increased total and Cu/Zn SOD activity for lactating sows (linear, P < 0.05). Sows fed TBCC diets had lower concentrations of Cu (P = 0.04), but higher concentrations of iron and manganese (P < 0.05) in the liver, when compared to those fed with CuSO4 diets. In addition, liver Cu concentrations increased with increasing dietary Cu levels (linear and quadratic, P < 0.05). Increasing dietary Cu levels resulted in the elevation of concentrations and contents of Cu in the liver of weanling piglets (linear, P < 0.0001). In the nursery pig experiment, pigs from sows fed 120 mg/kg Cu diets had greater ADG from d 0 to 14 (P < 0.05), and tended to have greater ADG in the overall period (P < 0.08), when compared to pigs from sows fed 20 mg/kg Cu diets. During the lipopolysaccharide challenge period, the challenged pigs from sows fed 120 mg/kg Cu had a greater overall rectal temperature than those from sows fed 20 mg/kg Cu (P = 0.01). Also, the challenged pigs fed with 220 mg/kg Cu diets had greater serum tumor necrosis factor-alpha concentration over time as compared to those fed 20 mg/kg Cu diets (P = 0.03). In summary, the TBCC may be a superior Cu source compared to CuSO4 regarding reproductive performance, and higher dietary Cu levels result in greater birth weight of piglets; furthermore, high Cu levels in sow and nursery diets promote growth performance of nursery pigs and affects their responses to immunological challenge.

Doctor of Philosophy / Diagnostic Medicine/Pathobiology / Raymond R. R. Rowland / Emerging viral diseases cause significant and widespread economic losses to U.S. swine production. Over the last 25 years, porcine reproductive and respiratory syndrome virus (PRRSV), porcine circovirus type 2 (PCV2) and porcine epidemic diarrhea virus (PEDV) have emerged or re-emerged, costing the industry billions through increased mortality and clinical or subclinical reductions in growth. Nursery pigs are greatly affected by these viruses due to high susceptibility to primary and secondary infections after weaning. However, clinical disease occurs in only a subpopulation of infected pigs and can vary drastically from sudden death to poor growth performance. This thesis documents a series of 4 studies where nursery pigs were challenged with either PRRSV/PCV2 or PEDV; the associations between clinical outcome and several factors affecting viral pathogenesis were investigated. In the first study, the administration of PRRS modified live virus vaccine prior to co-challenge with PRRSV/PCV2 was shown to protect against PRRS but enhance PCV2 replication and pathogenesis. This study provides insight into the role that PRRS vaccination has in both the control and potentiation of clinical disease. In the second study, microbial populations were compared between pigs with the best and worst clinical outcome following PRRSV/PCV2 co-infection. Increased fecal microbiome diversity was associated with improved clinical outcome; however, worst clinical outcome pigs had prolonged and greater virus replication, highlighting the host response to viral challenge as a primary determinant of clinical outcome. In the third study, 13 clinical phenotypes were compiled for >450 pigs after PRRSV/PCV2 co-infection. Duration of dyspnea and the presence of muscle wasting had the strongest associations with reduced weight gain. This study highlights the opportunity to improve animal welfare and production through improvements in clinical health. In the fourth study, clinical disease was mild to moderate and occurred within the first week after pigs were challenged with PEDV. However, PEDV was detected weeks after clinical disease had resolved and may implicate nursery pigs as an important source of viral carriage and transmission. Overall, the goal of this thesis was to develop models for understanding the impact of emerging and re-emerging viruses to improve recognition and control of disease.