Microrganismos formam associações com a maioria das espécies animais e um exemplo fascinante são as múltiplas interações nas colônias de formigas-cortadeiras. Os efeitos dessas interações (positivos e negativos) se manifestam na sanidade e desenvolvimento das colônias. Sendo assim, a compreensão das interações que ocorrem entre os microrganismos das colônias de formigas-cortadeiras A. sexdens é importante para fundamentar o controle biológico desta praga. Esse presente trabalho foi dividido em três capítulos. O primeiro capítulo objetivou comparar o desenvolvimento de colônias de Atta sexdens (Linnaeus) em contato com dois solos: (i) de área com ninhos e (ii) de área sem ninhos de formigas-cortadeiras. Foram conduzidos dois experimentos em laboratório. No experimento I, fêmeas recémfecundadas fundaram a colônia em pote com gesso e, após 106 dias, entraram em contato com solo. No experimento II, as fêmeas recém-fecundadas fundaram suas colônias diretamente no solo. A taxa de mortalidade de colônias, após 106 dias da revoada e se desenvolvendo em pote com gesso, foi de 28,6%. Quando se desenvolveram desde o início em contato com o solo, a taxa de mortalidade elevouse a 67,2 %. Os resultados confirmam que as colônias incipientes de A. sexdens sofrem forte pressão seletiva de microrganismos do solo no momento da fundação. No entanto, após o surgimento da força operária, mecanismos de defesa imune social, provavelmente, garantem o desenvolvimento da colônia a despeito da presença de microrganismos patogênicos no solo dos ninhos. O segundo capítulo objetivou isolar e identificar actinobactérias de solos de câmaras de jardim de fungos de A. sexdens e avaliar o efeito inibitório desses isolados sobre fungos associados às colônias de formigas-cortadeiras. Foram sequenciados o gene 16S rRNA de nove actinobactérias, sendo seis do gênero Streptomyces, duas do gênero Nocardia e uma do gênero Kitasatospora. Foi verificado que dois isolados de Streptomyces e um de Kitasatospora inibiram não só o fungo Escovopsis sp., como também o fungo entomopatogênico Metarhizium anisopliae e o fungo antagonista do cultivar simbionte de cortadeiras Trichoderma aff. strigosellum. Uma vez que não existem evidências de cultivo de actinobactérias na cutícula de operárias do gênero Atta, é possível hipotetizar que essas operárias estabeleçam simbiose temporária adaptativa com microrganismos do solo produtores de substâncias antifúngicas e antibióticas e que vivem em alguma parte de seu ninho ou mesmo no interior do seu corpo. Além disso, 10 os fungos patogênicos para colônias de formigas-cortadeiras presentes no solo adjacente ao ninho, apesar de constituírem um risco, podem ser controlados pelas secreções produzidas pelas operárias, bem como pelos metabólitos de algumas actinobactérias. O terceiro capítulo teve como objetivo verificar a aceitação e incorporação de iscas contendo micélio de Escovopsis sp. em colônias jovens de Atta sexdens. Verificou-se o transporte de iscas em todas as colônias do teste. Houve redução no peso do jardim de fungos das colônias que receberam iscas com Escovopsis sp., e aumento no peso do jardim de fungos de colônias que receberam tratamento controle. Conclui-se que a utilização de iscas com micélio de Escovopsis sp. foi satisfatória para introduzir o fungo parasita no jardim de fungos de colônias de Atta sexdens. / Microorganisms form associations with most animal species, and a fascinating example is the multiple interactions in the colonies of leaf-cutting ants. The effects of these interactions (positive and negative) are exhibited in the health and development of the colonies. Therefore, the understanding of the interactions that occur among the microorganisms into leaf-cutting ants colonies is important to support of biological control of this pest. This work was divided into three chapters. The first chapter aimed to compare the development of colonies of Atta sexdens (Linnaeus) in contact with two types of soil: (i) from an area used for nesting and (ii) from an area not used for nesting of leaf-cutting ants. Two experiments were conducted in the laboratory. In experiment I, newly fertilized females founded the colony in a plastic pot with gypsum and, after 106 days were transferred to a plastic pot with soil. In experiment II, newly fertilized females founded their colonies directly on the soil. Colony mortality rate 106 days after nuptial flight and founding in a plastic pot with gypsum was 28.6%. When they developed directly in contact with the soil, mortality rate increased to 67.2%. The results support that incipient colonies of A. sexdens undergo strong selective pressure from soil microorganisms at the time of foundation. However, after the emergence of the worker force, social immune defense mechanisms likely guarantee the development of the colony, despite the presence of pathogenic microorganisms in the soil of the nests. The second chapter aimed to isolate and identify actinobacteria from soils of fungi garden chambers of A. sexdens and to evaluate the inhibitory effect of these isolates on fungi associated with leaf-cutting colonies. To identify the isolates, the 16S rRNA gene was sequenced from nine actinobacteria: six of Streptomyces genus, two of Nocardia genus and one of Kitasatospora genus. Two Streptomyces and one Kitasatospora isolates inhibited not only the fungus Escovopsis sp., but also the entomopathogenic fungus Metarhizium anisopliae and the antagonistic fungus of the cultivar symbiont of leaf-cutting ant Trichoderma aff. strigosellum. Since there is no evidence of cultivation of actinobacteria on the Atta worker cuticle, it is possible that these workers establish temporary adaptive symbiosis with soil microorganisms producing antifungal and antibiotic substances and living in some part of their nest or even in the interior of their body. It can be hypothesized that pathogenic fungi present in the soil adjacent to the leaf-cutting ant nest, despite the risk they represent, are controlled by the secretions produced by the workers, as well as by the metabolites of some actinobacteria. The third chapter had the objective of verifying the acceptance and incorporation of baits containing mycelium of Escovopsis sp. by young colonies of A. sexdens. We verified the transport of baits in all tested colonies. There was a reduction in the weight of the fungus garden of the colonies that received baits with Escovopsis sp., and an increase in the weight of the fungus garden of colonies that received control treatment. It is concluded that the use of baits with mycelium of Escovopsis sp. was satisfactory to introduce the fungus parasite in the fungus garden of A. sexdens colonies.

All living organisms require food for growth and survival. Heterotrophs depend on autotrophs such as green plants which can synthesize their own food unlike heterotrophic animals. Among heterotrophs, only humans and some insects have the remarkable ability to cultivate crops for food. While humans cultivate plants, three insect lineages—ants, termites, and beetles—cultivate fungi inside their nests in obligate mutualistic exo-symbioses. Interestingly, just like human agriculture, insect fungus farms are also threatened by weeds and pests, e.g. the farms of fungus-growing termites which cultivate Termitomyces fungi can be overgrown by weeds such as the parasitic fungus Pseudoxylaria. Studies on ant and beetle fungus-farming systems have uncovered the important role of chemicals and behaviour in helping these insects to protect their crops from parasitic fungi. On the other hand, studies on the termite system till now, have only revealed the presence of antifungal compounds and actinobacteria which are largely non-specific and inhibitory to the mutualistic crop fungi. Antifungal behavioural mechanisms, if present, are yet to be discovered. Therefore, this thesis focuses on different anti-Pseudoxylaria mechanisms employed by fungus-growing termites, viz. role of nest abiotic factors, mechanism of fungal recognition by termite hosts, behavioural response of termite to Pseudoxylaria presence and coupling of this behaviour to anti-Pseudoxylaria activity. The present thesis has been divided into six chapters. CHAPTER 1 gives a brief literature review on fungus-farming insects and the different mechanisms which insects employ in order to keep their fungal farms safe from growth of parasitic fungi with specific reference to fungus-growing termites. The obligate mutualistic interaction between termites and the Termitomyces fungus is 19–49 My-old and is, therefore, a very ancient agriculture system. The mutualistic fungus is cultivated on partially digested plant matter called fungus comb inside the nest and harvested by termites for nutrition. At the same time, the weedy fungal parasite Pseudoxylaria can compete with the mutualistic fungus for nutrition leading to negative effects on the fungal farms. Termite hosts are believed to use abiotic factors, antibiotics and hygienic behaviours to keep their fungal gardens free from parasitic fungi such as Pseudoxylaria. However, the actual mechanisms used by termites against parasitic fungi are unclear. Unravelling the proximate mechanisms used in fungal cultivar protection is central to understanding the evolutionary stability of these farming mutualisms. CHAPTER 2 examines the diversity and population genetic structure of Termitomyces and Pseudoxylaria strains associated with the fungus-growing termite Odontotermes obesus. Genetic diversity of cultivar and parasite could have important implications for the stability of the mutualistic interaction, e.g. genetic clonality arising from monoculture is generally thought to make populations more prone to infection by parasites. Using molecular phylogenetic tools, within-nest genetic homogeneity was found in Termitomyces species but not in Pseudoxylaria species. Lower OTU but higher genotypic diversity (within the most abundant OTU) was found in the genus Termitomyces compared to Pseudoxylaria. Additionally, population genetics methods suggested a sexual population structure for Termitomyces and clonal propagation for Pseudoxylaria species. This is the first study to investigate the population genetics of the symbiotic fungi associated with the termite genus Odontotermes or any other termite species from India. In CHAPTER 3, the effect of nest micro-environment alone on the growth of the parasitic fungus Pseudoxylaria was examined. For this, seasonal changes in nest xiii temperature and CO2 were recorded and in situ and ex situ growth experiments were performed on Pseudoxylaria. The monthly pattern of mound temperatures was found to be similar to the outside—cycling from highs in summer to lows in winter—but characterised by dampened variation compared to high daily fluctuations outside. Moreover, the mound CO2 levels were found to be orders of magnitude above atmospheric levels and, unlike the outside, were characterised by daily and monthly fluctuations. With in situ experiments during summer and winter, the effect of these dissimilar conditions—inside and outside mounds—was examined on Pseudoxylaria growth. The growth of the parasite was found to be greater inside than outside the mound. Following this, the growth of different parasite isolates under controlled ex situ conditions was examined—spanning the variation in environmental conditions that mounds exhibit daily and seasonally. High CO2 levels decreased parasitic fungal growth in general but temperature had an isolate-dependent effect. Taken together, these results suggested that the parasite is adapted to survive in the mound. However, mound environmental conditions still seemed to exert a negative effect on parasite growth, even if they cannot inhibit Pseudoxylaria completely. These results shed light on the possible new role of termite-engineered structures in impacting parasitic fungus ecology, independent of any direct role of termites in suppressing parasite growth. This is the first study to investigate the effect of abiotic factors on Pseudoxylaria growth. In CHAPTER 4, whether termites can differentiate between Termitomyces and Pseudoxylaria was investigated. In a novel, laboratory-based choice assay, termites displayed a differential response towards the two fungi by burying the Pseudoxylaria with agar. Also, termites were found to be able to differentiate between the fungi using olfactory cues, i.e. smell, alone, for this task. The mutualistic and parasitic fungi were found to emit unique volatile bouquets which could help termites to distinguish between them. This is important because, whether termites use antifungal compounds or hygienic behaviours, it is crucial that they are able to differentiate between the parasitic and mutualistic fungi so that they can selectively use antifungal mechanisms—whether chemical or behavioural—against Pseudoxylaria. This is of special significance because, many actinobacteria and anti-Pseudoxylaria compounds isolated from this system till now, lack specificity and inhibit the mutualistic Termitomyces as well. Also, fungal grooming and weeding behaviours as displayed by fungus-growing ants have not yet been reported in termites. This is the first study to show that termites have the behavioural capacity to differentiate between the mutualistic and parasitic fungi in an ecologically relevant setting. In CHAPTER 5, whether the burying of Pseudoxylaria could affect its growth was investigated. It was found that termites can utilise agar, glass beads and soil for deposition over the offered fungal plugs but the use of agar and glass beads did not inhibit Pseudoxylaria growth effectively. On the other hand, soil deposition was found to decrease growth of both Pseudoxylaria and Termitomyces fungi post-burial. However, Pseudoxylaria was found to be affected more strongly than Termitomyces. Further, hypoxia acting alone seemed to decrease only Pseudoxylaria survival without any apparent effect on Termitomyces. Therefore, hypoxia induced by soil deposition may be the reason behind the decrease in Pseudoxylaria survival. However, presence of antifungal compounds can not be ruled out and they may be selectively applied in larger quantities on Pseudoxylaria with soil deposition. This study demonstrates an anti-Pseudoxylaria activity of this insect behaviour, unique to termites among fungus-farming insects, to the presence of the parasitic fungus. CHAPTER 6 concludes the findings of this thesis and suggests a working model for the mechanism of growth suppression of Pseudoxylaria inside a termite nest. In particular, focus is on the important role of abiotic factors when combined with termite behaviour in the apparent absence of Pseudoxylaria from termite nests. These results not only shed new light on how the ecology of these fungi is affected by their termite host but also reveal the mechanistic bases that may contribute fundamentally to the evolutionary stability of this ancient mutualism.