Badges of status are supposed to have insignificant production costs, so use costs are thought to be most important in ensuring signal reliability. Use costs arise from the use of the status signal in social interactions. Social experiences that arise from the use of inappropriate signals in social interactions may drive mechanisms that result in reduced fitness for inappropriate signalers. The role of social control, probing and familiarity in producing use costs was explored. There was no evidence that social control by dominants produced a cost for cheaters and no evidence that social control by subordinates produced a cost for inappropriate signaling by Trojans. Probing produced a cost for cheating when resource value was high but not when resource value was low. Familiarity had some effect on the cost and benefit of cheating but in patterns that were not predicted. Familiarity both eliminated a benefit of cheating and reduced a cost of cheating; therefore it is uncertain how familiarity affects honest signaling. The status signal of the receiver had no effect on the cost or benefits of cheating, and there was no evidence of punishment. Social experiences have the potential to affect signal development to produce a correspondence between signal and status. The effects of social experience on signal production were examined and there was little evidence that social experience influenced bib development. Neither aggression expressed nor aggression received was not predictive of bib size. Additionally, tests on the different measures of winning experience produced conflicting conclusions regarding the relationship between winning experience and bib development.

<p>An atom or ion can change quantum state, usually through emission or absorption of a photon. The photon has the same energy as the energy difference between the states of the transition. The states, or energy levels, of an atom are quantized and light emitted, or absorbed, from the atom is therefore of specific wavelengths, giving spectral lines. The spectrum of an atomic ion is unique and contains information of the structure and energy levels of the ion. The spectrum of an atom can be used as a fingerprint in determinations of the abundance of the element in different objects.</p><p>This thesis is focused on some weak effects observed by spectroscopy. Although the effects are weak, they turn out to be of great importance. According to quantum mechanics transitions between certain states are not allowed. Here the weak effects open the possibility for transitions. Spectral lines from forbidden transitions are very weak and difficult to observe under ordinary laboratorial conditions, but they are commonly observed from astrophysical objects and can be very useful for diagnostics of astrophysical plasmas. The first reported observation of forbidden lines was from an astrophysical object and at that time supposed to be from new, previous unknown, elements. If all possible decay channels from an energy level are forbidden, the energy level is metastable and has usually a lifetime 10$^8$ times longer than an ordinary excited state. Measurements of such long lifetimes are difficult since the ion need to be confined during the observation time. Confinement of ions can be achieved with a storage device, such as a storage ring or a trap, where the ions are stored without interacting with each other or the surroundings.</p><p>A laser probing technique has been developed at the storage ring CRYRING, for measurements of lifetimes of metastable states. The technique has now been improved for measurement of longer lifetimes. The technique has also been modified to fit when measuring on negative ions. Results of lifetime measurements are reported and the techniques and methods used are described.</p><p>Another weak effect is hyperfine interaction, which splits the energy levels of an atom or ion. Hyperfine splitting is very small and usually special spectral techniques are needed to resolve such structure. A laser can, in combination with an electromagnetic radio-frequency field, be used for accurate determination of hyperfine structures in atomic ions. Such measurements are also important for evaluation of astrophysical properties, since hyperfine structure can broaden the spectral lines. An experimental setup for such double resonance measurements has been developed and constructed. Results of experimental measurements are reported and the technique is described.</p>

There is an increasing trend towards miniaturization of micro features as well as micro parts. In order to accurately produce these components and the miniaturized features on them, accurate measurement of the component dimensions is required. However, there are limitations in the dimensional measurement of miniature components: micro-probes and Micro coordinate machines (micro-CMMs) suitable for micro-feature measurement are expensive and fragile so it can be difficult to justify the cost for dimensional verification of batch-produced parts (in many cases miniature components are batch-produced). Therefore, a new cost-effective way for dimensional measurement of miniature components is needed. With this in mind, this thesis describes the development of a novel, three-dimensional measurement system using a rotating wire as a probe and acoustic emissions for contact sensing. This study presents a novel concept of three-dimensional measurements using a rotating wire as a probe and acoustic emission for contact sensing. Experimental results show that the probing system can measure a part with high repeatability. A controller algorithm has been developed for automated scanning within a machine tool. The performance is verified against calibration artifacts. The main contributions of this thesis are as follows: firstly, the traditional contact and non-contact micro coordinate measuring machines including sensing techniques and acoustic emission sensing are reviewed, and a clear set of knowledge gaps are identified in these fields. Secondly, a novel concept of three-dimensional measurements using a rotating wire as a probe tip and acoustic emission for contact sensing is introduced. The operation and measurements of the rotating micro probing based on acoustic emission (AE) sensing are validated experimentally. Initially, the ability of the rotating microprobe tip based on AE sensing to counteract the measured surfaces interaction rubbing is investigated. Other areas of validation are in the determination of the probing point repeatability, the straightness, and probe tip calibration. Thirdly, the acoustic emission signal and its characterizations of the probe tip touches are studied. The behavior of the rotating probe tip focusses on the threshold, touching time and as well as measured materials type that has an effect on probing accuracy. Finally, the estimated effective diameter and approximation threshold are modeled. This work is directly aimed at ensuring that the developed rotating probe tip based on AE sensing is capable of operating in an industrial metrology environment. It is concluded that the developed rotating probe tip based on AE sensing will be able to address the current needs of the micro-CMM community. On the other hand, it is possible that the rotating wire probe tip based on AE sensing can measure micro holes less than the achieved in this work, further increasing its usefulness. / Graduate / elfurjan@uvic.ca

Stable isotope probing (SIP) is an established technique that can be applied to identify the metabolically active micro-organisms within a microbial population. The SIP method utilises an isotopically-labelled substrate and PCR techniques to discern the members of a microbial community that incorporate the isotope into their DNA or RNA. The current literature gap around using 15N isotopes with RNA-SIP offers real potential and advantages for targeting and identifying active members from mixed communities involved in global biogeochemical nitrogen cycling. This study specifically investigated whether nitrogen based compounds can be used as substrates in RNA-SIP methodologies and whether they can in turn be used to probe mixed community environments known to be actively fixing nitrogen. The nitrogen-limited systems targeted represented an ideal opportunity to assess the suitability of 15N-RNA-SIP approaches due to their known high nitrogen fixation rates. Identifying these nitrogen-fixing bacteria could provide a better representation analysis of the community, leading to an improved prediction on how to manage and optimise the treatment performance of target waste systems and to exploit the unique bioconversion properties of these types of organisms. Initially, the project undertook methodological proof of concept by using a soluble nitrogen source, 15NH4Cl, to label the RNA of Novosphingobium nitrogenifigens and a mixed microbial community. Successful separation of the 14N- (control) and 15N-RNA was achieved for both pure and mixed communities using isopycnic caesium trifluoroacetate (CsTFA) gradients in an ultracentrifuge. The usefulness of this technique to identify active diazotrophs in real environmental samples was tested using a nitrogen-fixing community from a pulp and paper wastewater treatment system. After growing the mixed culture with 15N2 as the sole nitrogen source, the labelled RNA was extracted and fractionated using isopycnic centrifugation in CsTFA gradients. The community composition of the active nitrogen-fixing community in the 15N2 enriched fraction was analysed by establishing a 16S rRNA gene clone library containing over 200 members. These were analysed by comparison with published sequences and by phylogenetic analysis. It was found that the more isotopic label substrate incorporated, the further the buoyant density (BD) separation between 15N- and 14N-RNA. Novosphingobium nitrogenifigens gave an average BD shift of 0.03 + 0.004 g ml-1 (95.0 atom % 15N) with 15NH4Cl. For mixed communities the average BD shift was 0.02 + 0.004 g ml-1 (80.0 atom % 15N) with 15NH4Cl and 0.013 + 0.002 g ml-1 (32.6 atom % 15N) when using 15N2. Clone library analysis of 16S rRNA genes present in the enriched 15N-RNA fraction of the mixed community was shown to consist of a diverse population of bacteria as indicated by a Shannon Weaver index value of gt;2.8. Three dominant genera (Aeromonas, Pseudomonas and Bacillus) were identified by comparison with published sequences and phylogenetic analysis. Many other groups not known as archetypal nitrogen-fixing bacteria were also identified, demonstrating that 15N2-RNA-SIP provides a useful tool for the identification of important and previously unknown contributors to nitrogen fixation in a range of environments. Overall, this project has established that nitrogen based RNA-SIP is a powerful tool that can be used successfully and reproducibly with both pure and complex mixed microbial communities to study active diazotrophs in environmental samples.

An atom or ion can change quantum state, usually through emission or absorption of a photon. The photon has the same energy as the energy difference between the states of the transition. The states, or energy levels, of an atom are quantized and light emitted, or absorbed, from the atom is therefore of specific wavelengths, giving spectral lines. The spectrum of an atomic ion is unique and contains information of the structure and energy levels of the ion. The spectrum of an atom can be used as a fingerprint in determinations of the abundance of the element in different objects. This thesis is focused on some weak effects observed by spectroscopy. Although the effects are weak, they turn out to be of great importance. According to quantum mechanics transitions between certain states are not allowed. Here the weak effects open the possibility for transitions. Spectral lines from forbidden transitions are very weak and difficult to observe under ordinary laboratorial conditions, but they are commonly observed from astrophysical objects and can be very useful for diagnostics of astrophysical plasmas. The first reported observation of forbidden lines was from an astrophysical object and at that time supposed to be from new, previous unknown, elements. If all possible decay channels from an energy level are forbidden, the energy level is metastable and has usually a lifetime 10$^8$ times longer than an ordinary excited state. Measurements of such long lifetimes are difficult since the ion need to be confined during the observation time. Confinement of ions can be achieved with a storage device, such as a storage ring or a trap, where the ions are stored without interacting with each other or the surroundings. A laser probing technique has been developed at the storage ring CRYRING, for measurements of lifetimes of metastable states. The technique has now been improved for measurement of longer lifetimes. The technique has also been modified to fit when measuring on negative ions. Results of lifetime measurements are reported and the techniques and methods used are described. Another weak effect is hyperfine interaction, which splits the energy levels of an atom or ion. Hyperfine splitting is very small and usually special spectral techniques are needed to resolve such structure. A laser can, in combination with an electromagnetic radio-frequency field, be used for accurate determination of hyperfine structures in atomic ions. Such measurements are also important for evaluation of astrophysical properties, since hyperfine structure can broaden the spectral lines. An experimental setup for such double resonance measurements has been developed and constructed. Results of experimental measurements are reported and the technique is described.

In this thesis we study the standard probabilistic model for hashing with linear probing. The main purpose is to determine the asymptotic distribution for the maximum displacement. Depending on the ratio between the number of items and the number of cells, there are several cases to consider. Paper I solves the problem for the special case of almost full hash tables. That is, hash tables where every cell but one is occupied. Paper II completes the analysis by solving the problem for all remaining cases. That is, for every case where the number of items divided by the number of cells lies in the interval [0,1]. The last two papers treat quite different topics. Paper III studies the area covered by the supremum process of Brownian motion. One of the main theorems in Paper I is expressed in terms of the Laplace transform of this area. Paper IV provides a new sufficient condition for a collection of independent random variables to be negatively associated when conditioned on their total sum. The condition applies to a collection of independent Borel-distributed random variables, which made it possible to prove a Poisson approximation that where essential for the completion of Paper II.

Chemical modification and limited enzymatic hydrolysis are powerful methods to obtain detailed information on the structure and dynamics of RNAs in solution. In the work presented here I have taken advantage of the properties of the divalent metal ion lead(II) to establish it as a new probe for investigating the structure of RNA in vivo. Besides highly specific lead(II)-induced cleavage due to the presence of tight metal ion binding sites, lead(II) is known to cleave RNA within single-stranded regions, loops and bulges. The detailed structural data obtained with three different RNAs: tmRNA, CopT, and the leader region of the ompF mRNA, show that lead(II) has great potential for in vivo studies of RNA structure. In P. fluorescens, the activity and stability of RsmY, a small regulatory RNA, was shown to be strongly dependent on repeated GGA motifs in single-stranded regions. In vivo lead(II) probing essentially confirmed predicted secondary structures and also indicated binding to a protein, RsmA. The potential in using lead(II) for mapping protein binding sites on RNAs was shown for the interaction between E. coli tmRNA and the SmpB protein. In vivo and in vitro data show protections in the tRNA-like domain of tmRNA due to binding to the SmpB protein, indicating that the SmpB protein is associated with the majority of tmRNA in the cell. Furthermore, the overall conformation/ structure of E. coli RNase P was analyzed by probing the native structure of M1 RNA in vivo with lead(II). The observed cleavages suggests that M1 RNA is present in two main conformations in the cell, one being characteristic of free RNase P, and one of an RNase P-tRNA complex. The results also indicate that the C5 protein subunit has only minor effects on the overall structure of the RNA subunit.

The way printed circuit board interconnects for high-speed digital signals are designed ultimately determines the performance that can be achieved for a certain interface, thus having a profound impact on whether the complete communication channel will comply with the desired standard specification or not. Good understanding and methods for anticipating and verifying this behaviour through computer simulations and practical measurements are therefore essential. Characterization of an interconnect can be performed either in the time domain or in the frequency domain. Regardless of the domain chosen, a method for unobstrusively connecting to the test object is required. After various different attempts it could be concluded that frequency domain measurements using a vector network analyzer together with microwave probes will provide the best measurement fidelity and ease of use. In turn, this method requires the test object to be prepared for the measurement. Advanced computer simulation software is available, but comes with the drawback of dramatically increasing the requirements on computational resources for improved accuracy. In general, these simulators can be configured to show good agreement with measurements at frequencies as high as ten gigahertz. For ideal interconnects, the simplest and, thus, fastest methods will provide good enough accuracy. These simple methods should be complemented with the results from more accurate simulations in cases where the physical structure is complex or in other ways deviates from the ideal. Several practical routing situations were found to introduce severe signal integrity issues. Through appropriate use of the methods developed in this thesis, these can be identified in the design process and thereby avoided.

The consortia of microorganisms responsible for the hydrolysis of cellulose in situ are at present poorly characterized. Nonetheless, the importance of these communities is underscored by their capacity for converting biomass to greenhouse gases such as carbon dioxide and methane. The metabolic capacities of these organisms is particularly alarming considering the volume of biomass that is projected to re-enter the carbon cycle in Arctic tundra soil environments as a result of a warming climate. Novel cold-adapted cellulase enzymes also present enormous opportunities for a broad range of industries. DNA stable-isotope probing (DNA-SIP) is a powerful tool for linking the phylogenetic identity and function of cellulolytic microorganisms by the incorporation of isotopically labelled substrate into nucleic acids. By providing 13C-enriched glucose and cellulose to soil microcosms, it was possible to characterize the communities of microorganisms involved in the metabolism of these substrates in an Arctic tundra soil sample from Resolute Bay, Canada. A protocol for generating 13C-enriched cellulose was developed as part of this thesis, and a visual DNA-SIP protocol was generated to demonstrate the experimental outline. Denaturing gradient gel electrophoresis (DGGE) and 16S rRNA clone libraries were used to visualize changes in community structure and to identify prevalent, active phylotypes in the SIP incubations. Notably, predominant phylotypes changed over time and clustered based on substrate metabolism. Labelled nucleic acids identified by sequenced DGGE bands and 16S rRNA gene clone libraries provided converging evidence indicating the predominance of Clostridium and Sporolactobacillus in the 13C-glucose microcosms, and Betaproteobacteria, Bacteroidetes, and Gammaproteobacteria in the 13C-cellulose microcosms. Active populations consuming glucose and cellulose were distinct based on principle coordinate analysis of “light” and “heavy” DNA. A large portion of the recovered sequences possessed no close matches in the GenBank database, reflecting the paucity of data on these communities of microorganisms.

Electro-Optic(EO) probing techniques are advancing rapidly in recent years due to their superior performance in characterization of semiconductor devices and circuits. Although the conventional systems can only monitor the amplitude distribution of electric field, some advanced EO probing techniques are able to measure not only the electric-field amplitude, but also direction of the electric field. Because valuable information can be released in such as chamfered bending transmission lines, patch antennas and wireless devices, etc., EO probing technique becomes an important tool to the characterization of radio frequency devices. These systems often require two beams or two different EO crystals to differentiate the directions of the electric field under test because only one type of EO modulation, compressed/stretched deformation modulation, is utilized in the measurement. Therefore, the measurements are inaccurate and complicated due to the fact that the path length and EO interaction strength of the two probing beams are different. In this research, we demonstrate the EO probing technique with one beam and one EO crystal to extract 2-D electric-field vector using an additional modulation effect, i.e. rotational deformation modulation. This electric field vector measurement technique is compact, accurate and low cost. We not only prove that on-wafer 2-D electric-field-vector measurement using single-beam electro-optic probing technique is feasible theoretically and experimentally, but also combine rotational deformation modulation and compressed/stretched deformation modulation to a practical circuit measurement. Commercial software, Ansoft Maxwell 3-D Field Simulator, is employed to verify our measurements. Good agreement is obtained between experiment and simulation results. In addition to 2-D electric-field-vector measurement, we made an attempt to high-frequency real-time measurement. With the trend of low voltage operation in wireless communication, the most serious issue of high-frequency real-time EO probing technique is the improvement of signal to noise ratio. We tried to improve the stability of laser source, control the polarization of incident beam, and utilize Fabry-Perot filter in order to implement high-frequency real-time measurement. A bandwidth of 900 MHz was achieved, which is record-high to our knowledge.