München, Techn. University, Diss., 2004.

Bochum, Univ., Diss., 2003. / Computerdatei im Fernzugriff.

Bochum, Univ., Diss., 2003. / Computerdatei im Fernzugriff.

Bochum, Universiẗat, Diss., 2003.

Universiẗat, Diss., 2002--Kaiserslautern.

Le but de ce doctorat était de comprendre les bases génétiques de la diversification de la pigmentation extra-oculaire chez les embryons des Gerromorphes. La plupart des punaises semi-aquatiques présentent une variabilité de pattern de couleur jaune ou/et rouge dans les pattes et les antennes au stade embryonnaire. La couleur rouge observée dans les appendices étant similaire à celle présente dans les yeux, nous avons émis l'hypothèse que les couleurs extra-oculaires pouvaient être produites par la co-option des voies de synthèse des pigments des yeux. Nous avons d'abord déterminé l'histoire évolutive de ce trait à partir de sa présence ou de son absence dans les embryons de 34 espèces. Grâce à l'analyse génétique par interférence ARN et hybridation in situ, nous avons identifié les voies impliquées dans la pigmentation des yeux et des organes extra-oculaires dans l'espèce Limnogonus franciscanus. Nous avons ensuite testé par interférence ARN et hybridation in situ trois gènes de la voie ptéridine dans cinq autres espèces de Gerromorphes présentant des colorations extra-oculaires différentes. Les résultats suggèrent que la même voie a été recrutée une seule fois pour produire la diversité de pattern. De plus, grâce à une analyse chimique par ultra-chromatographie couplée à de la spectrométrie de masse, nous avons identifié que la xanthopterin et l’erythropterin sont les deux pigments responsables de la couleur chez différentes espèces. Nous nous sommes aussi demandé comment le recrutement d'une seule et même voie conservée pouvait produire une telle diversité de pattern. En utilisant la technologie de transcriptomique du RNA-seq, nous avons identifié 167 facteurs de transcription co-exprimés dans les yeux, les antennes et les pattes des embryons de Limnogonus franciscanus. Ces protéines pourraient intervenir dans la régulation des gènes impliqués dans la formation des patterns de couleur embryonnaire. Nous avons initié un crible ARNi de ces facteurs de transcription. En conclusion, la pigmentation des punaises semi-aquatiques au stade embryonnaire est un bon modèle pour comprendre la co-option des voies génétiques et la question sous-jacente de la façon dont une voie conservée pourrait être réglementée pour produire divers phénotypes. / The principal aim of this doctoral thesis was to understand the genetic basis for the diversification of the extra-ocular pigmentation in Gerromorpha embryos. Most of the semi-aquatic bugs develop a variability of yellow or red colours patterns in legs and antennas during the embryonic stage. Since the red colour in appendages was similar to the one present in eyes, we hypothesized that the extra-ocular colours could be produced by the co-option of the eye pigments biosynthesis pathway. First we inferred the evolutionary history of this trait based on its presence or absence in embryos of 34 species. We found that the ancestral state of the trait in Gerromorpha was yellow and that six independent lineages evolved bright red colour, while two lineages lost the colour. Using RNAi and in situ hybridisation on homologous genes from the pteridine and ommochrome biosynthesis pathways, we described the genetic pathway involved in the production of pigments in eyes and extra-ocular tissues in Limnogonus franciscanus embryos. After that, we performed a screening of three genes from this pathway in five other species with different extra-ocular colours and patterns. We discovered that the same pathway was recruited once to produce the diversity of patterns in Gerromorpha. Furthermore, we identified by UPLC-HRMS that xanthopterin and erythropterin pigments produce the variability of colours and patterns in different species. Our next step aimed to understand how the recruitment of a conserved pathway could produce this striking diversity of colour patterns. Using RNA-Seq technology and bioinformatics tools, we identified 167 transcription factors that are co-expressed in eyes, antennas and legs of embryos in Limnogonus franciscanus. These proteins might be involved in the regulation of genes responsible for the different colour patterns. We have started an RNAi screen of these transcription factors. This project is still ongoing but in this thesis I will present the preliminary results and conclusions.In conclusion, the pigmentation of semi-aquatic bugs during the embryonic stage is a good model to understand the co-option of pre-existing genetic pathways and underlying the question of how a conserved pathway could be regulated to produce diverse morphological phenotypes.

<p>Autoimmune polyendocrine syndrome type I (APS) is a monogenous, recessively inherited disease characterised by endocrine and non-endocrine autoimmune manifestations. One fifth of APS I patients suffer from periodic intestinal dysfunction with varying degrees of malabsorbtion, steatorrhea and constipation. Alopecia areata is found in one third of APS I patients. By immunoscreening human cDNA libraries derived from normal human duodenum and scalp with APS I sera, we identified tryptophan hydroxylase (TPH) as an intestinal autoantigen and tyrosine hydroxylase (TH) as a dermal autoantigen. Forty-eight percent (38/80) of the APS I patients had TPH antibodies (Ab) and 44% (41/94) showed TH immunoreactivity. No reactivity against TPH or TH was seen in healthy controls. TPH-Abs showed a statistically significant correlation with gastrointestinal dysfunction (p<0.0001) and TH-Abs were significantly correlated to alopecia (p=0.02). TPH-Ab positive APS I sera specifically immunostained TPH containing enterochromaffin cells in normal duodenal mucosa. In affected mucosa a depletion of the TPH containing EC cells was seen. In enzyme inhibition experiments TPH and TH activity <i>in vitro</i> was reduced by adding APS I sera. TPH and TH together with phenylalanine hydroxylase (PAH) constitute the group of pteridine dependent hydroxylases. These are highly homologous enzymes involved in the biosynthesis of neurotransmitters. Immunoprecipitation of PAH expressed <i>in vitro</i> showed that 27% (25/94) of APS I patients had antibodies reacting with PAH, but no associations with clinical manifestations was observed. An immunocompetition assay showed that the PAH reactivity reflects a cross-reactivity with TPH.</p><p>In conclusion, we have identified TPH and TH as intestinal and dermal autoantigens in APS I, coupled to gastrointestinal dysfunction and alopecia. We have also demonstrated immunoreactivity against PAH in APS I patient sera reflecting a cross-reactivity with TPH.</p>

Autoimmune polyendocrine syndrome type I (APS) is a monogenous, recessively inherited disease characterised by endocrine and non-endocrine autoimmune manifestations. One fifth of APS I patients suffer from periodic intestinal dysfunction with varying degrees of malabsorbtion, steatorrhea and constipation. Alopecia areata is found in one third of APS I patients. By immunoscreening human cDNA libraries derived from normal human duodenum and scalp with APS I sera, we identified tryptophan hydroxylase (TPH) as an intestinal autoantigen and tyrosine hydroxylase (TH) as a dermal autoantigen. Forty-eight percent (38/80) of the APS I patients had TPH antibodies (Ab) and 44% (41/94) showed TH immunoreactivity. No reactivity against TPH or TH was seen in healthy controls. TPH-Abs showed a statistically significant correlation with gastrointestinal dysfunction (p&lt;0.0001) and TH-Abs were significantly correlated to alopecia (p=0.02). TPH-Ab positive APS I sera specifically immunostained TPH containing enterochromaffin cells in normal duodenal mucosa. In affected mucosa a depletion of the TPH containing EC cells was seen. In enzyme inhibition experiments TPH and TH activity in vitro was reduced by adding APS I sera. TPH and TH together with phenylalanine hydroxylase (PAH) constitute the group of pteridine dependent hydroxylases. These are highly homologous enzymes involved in the biosynthesis of neurotransmitters. Immunoprecipitation of PAH expressed in vitro showed that 27% (25/94) of APS I patients had antibodies reacting with PAH, but no associations with clinical manifestations was observed. An immunocompetition assay showed that the PAH reactivity reflects a cross-reactivity with TPH. In conclusion, we have identified TPH and TH as intestinal and dermal autoantigens in APS I, coupled to gastrointestinal dysfunction and alopecia. We have also demonstrated immunoreactivity against PAH in APS I patient sera reflecting a cross-reactivity with TPH.

Made available in DSpace on 2017-07-24T19:38:12Z (GMT). No. of bitstreams: 1 VivianePaula.pdf: 3188050 bytes, checksum: 1b1ca9983470b6e6a3669cfd52a8c846 (MD5) Previous issue date: 2007-03-06 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / The enzymes dihydrofolate reductase-thymidylate synthase (DHFR-TS) and pteridine reductase (PTR) are involved in the pterin/folate dependent metabolism; together they represent an important target for chemotherapy of parasitic leishmanias and trypanosomes. Xray crystallography was used to elucidate accurately the structure of the PTR1 enzyme from Trypanosoma brucei in complex with inhibitors which are analogous to the substrate. The ligands assayed for crystallization were the substrate folate and the inhibitors melamine, 6-thioguanine, WSG1012, WSG1034, WSG3065, WSG3066 and WSG3067. Of these, four yielded crystals with diffraction patterns sufficient for a complete dataset. WSG3065 (later revealing the lack of the ligand), WSG3066 and WSG3067 are three of the several structures presented in this work which came from the cited crystallization assays; added to these are the refined structures complexed with triamterene and cyromazine, proceeded from two other datasets already available. The datasets were processed with the programs Mosflm / Scala and Xds / Xscale, the structures were refined using the programs CNS and Refmac5 and validated with the programs Procheck, Whatcheck, Sfcheck and ValidationPDB. All refined structures belong to the space group P21 with unit cells around a = 79, b = 90, c = 82, b = 115, 4 monomers each of 268 residues per asymmetric unit and complex active sites. Besides the inhibiting ligands (except WSG3065) present in the structure, other ligands were found either near or outside the active site: dithiothreitol, glycerol, ethylene glycol, sodium and acetate ions. Analyses on the ligand positions and corresponding interactions with the protein were carried out to understand modes of inhibition and to guide the design or the discovery of new compounds which are potent, but selective to the parasitic enzyme, inhibitors. Thereby, initial docking studies were performed aiming at identifying new molecules or lead compounds with inhibitory capabilities. / As enzimas dihidrofolato redutase-timidilato sintase (DHFR-TS) e pteridina redutase (PTR) estão envolvidas no metabolismo pterina/folato dependente; juntas, representam um importante alvo para a quimioterapia de leishmanias e tripanossomas parasitas. A Cristalografia por Raios X foi utilizada para elucidar acuradamente a estrutura da enzima PTR1 de Trypanosoma brucei complexada com inibidores que são análogos ao substrato. Os ligantes ensaiados para cristalização foram o substrato folato e os inibidores melamina, 6-tioguanina, WSG1012, WSG1034, WSG3065, WSG3066 e WSG3067. Destes, quatro forneceram cristais com padrões de difração suficientes para um conjunto de dados completo. WSG3065 (mais tarde revelando ausência do ligante), WSG3066 e WSG3067 são três das estruturas apresentadas neste trabalho derivadas dos ensaios de cristalização citados; somadas a estas estão as estruturas refinadas dos complexos com triantereno e ciromazina, provenientes de dois outros conjuntos de dados anteriormente disponíveis. Os conjuntos de dados foram processados com os programas Mosflm / Scala e Xds / Xscale, as estruturas refinadas usando-se os programas CNS e Refmac5 e validadas com os programas Procheck, Whatcheck, Sfcheck e ValidationPDB. Todas as estruturas refinadas apresentaram grupo espacial P21 com celas unitárias aproximadas a = 79 = 90, c = 82 , b = 115, 4 monômeros de 268 resíduos cada por unidade assimétrica e sítios ativos complexos. Além dos ligantes inibidores presentes nas estruturas (exceto WSG3065), outros ligantes foram encontrados próximos ou fora do sítio ativo: ditiotreitol, glicerol, etilenoglicol, íons sódio e íons acetato. Análises das posições dos ligantes inibidores e correspondentes interações com a proteína foram realizadas a fim de se entender modos de inibição e, em particular, assistir ao planejamento ou à descoberta de novos compostos que sejam inibidores potentes, mas seletivos, para a enzima parasitária. Assim, estudos iniciais de atracagem (docking) foram realizados visando identificar novas moléculas ou arcabouços com capacidades inibitórias.