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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Endocitose e transporte intracelular de isoformas da pulchellina / Endocytosis and cell transport of pulchellin isoforms

Moreira, Heline Hellen Teixeira 26 April 2017 (has links)
A pulchellina é uma glicoproteína heterodimérica com duas cadeias, pertencente à família das proteínas inativadoras de ribossomos (RIPs) do tipo 2. A cadeia A é enzimaticamente ativa e é capaz de remover uma adenina da porção 28S do rRNA; a cadeia B é uma lectina que se liga a resíduos de D-Galactose terminais, presentes na membrana. Das 4 isoformas da pulchellina (PI, PII, PIII, PIV), PII é a mais tóxica in vivo, sendo a atividade catalítica da cadeia A similar para todas as isoformas. A interação da cadeia B com os glicoreceptores de membrana e seu conseguinte processo de endocitose é crucial para que cadeia A tóxica entre na célula e torne-se disponível para atuar no seu sítio ribossomal. Assim, visando explorar e encontrar potenciais diferenças no mecanismo de ligação à célula e de endocitose das isoformas, foram realizados experimentos usando microscopia confocal com as toxinas marcadas com Alexa flúor® em células HeLa e MV3. As imagens obtidas mostraram que PII localiza-se na região perinuclear das células enquanto PIV predomina na região cortical. Esses resultados sugeriram que as isoformas apresentam distintos mecanismos de entrada e transporte nas células. Para esclarecer tal questão, a ação da pulchellina em células HeLa tratadas com diversas drogas que atuam em diferentes rotas endocíticas e de translocação, foi monitorada. Os resultados de inibição de síntese proteica mostraram que as células sofrem proteção contra a pulchellina na presença de brefeldina A, indicando que a pulchellina necessita ser transportada via Golgi para executar sua função. Inibidores de glicosilação como tunicamicina, swainsonine e inibidores de síntese proteica, como a puromicina e cicloheximidina sensibilizaram as células à PII e PIV, mas em diferentes taxas. Por outro lado, a puromicina e a cicloheximidina não afetaram a taxa de endocitose das isoformas, o que indica que a pulchellina na ausência dos inibidores compete pelo transporte ou processamento de glicoproteínas recém-sintetizadas. Experimentos de ligação e captação da pulchellina mostraram que PII apresenta 30% menos afinidade pela superfície de células HeLa que PIV, além de apresentar menor taxa endocítica. Esses dados corroboram estudos de FCS (espectroscopia de correlação e fluorescência) que identificaram que a difusão de PIV em células HeLa é maior que de PII. Nos experimentos realizados com inibidores de dinamina, ambas isoformas tiveram as suas taxas de endocitose aumentadas, indicando um efeito compensatório para via endocítica independente de dinamina. Em células incubadas com PDMP e neuraminidase, PIV mostrou uma associação às células reduzida, enquanto PII não se alterou, indicando que PIV pode necessitar de esfingolipídeos e glicocomplexos contendo ácido siálico para ligar e se internalizar nas células testadas. Para investigar essa diferença na interação foram realizados ensaios in vitro de DSC (Calorimetria Diferencial de Varredura) e SPR (ressonância plasmônica de superfície) com as isoformas isoladas. Esses ensaios mostraram que PIV e PII apresentam interações distintas com o gangliosídeo GM1, sendo que a PIV interage mais hidrofobicamente e com uma maior taxa de associação com GM1 que a PII. / Pulchellin is a heterodimeric toxin found in Abrus pulchellus seeds. It is a type 2 ribosome inactivating protein, which consists of a toxic A-chain linked to a sugar binding B-chain. The B-chain mediates its binding to the galactose residues on the cellular membrane in a process that is then followed by an endocytic uptake. Once the A-chain reaches the cytosol it inhibits protein synthesis leading to cell death. In order to explore pulchellin isoforms II and IV (PII and PIV) cell entry and transport mechanisms, experiments monitoring toxin labelled with Alexafuor® in MV3 and HeLa cells were performed using confocal microscopy. We have investigated the pulchellin action in pre-treated HeLa cells with several drugs, targeting different endocytic and translocation routes. Confocal images showed PII tends to be localized in cells cortical region and PIV tend to be localized in cell\'s perinuclear region, suggesting that isoforms have different cell entry and transport mechanisms. The protein synthesis inhibition results showed that brefeldin A protects cells against the toxic effect of pulchellin, which indicates the pulchellin needs to be transported to Golgi to perform its toxic effect. When HeLa cells were incubated with protein synthesis inhibitors, such as puromycin and cycloheximidine and glycosilation inhibitors such as tunicamycin, swainsonine, they were sensitized to pulchellin, but to different extent for PII and PIV. Binding and uptake experiments showed that PII exhibits 30% less affinity than PIV on HeLa cells surface, PII also has lower endocytic rate than PIV in the cells. These data corroborate with FCS (Fluorescence Correlation Spectroscopy) results, which identified that PIV diffuses faster than PII into the celIs. Dynamine inhibitors increased endocytosis rates in both isoforms, indicating that pulchellin is upregulating the dynamine-independent endocytosis, possibly pulchellin is being internalized into the cells by alternative endocytic routes. When HeLa cells were incubated with PDMP and neuraminidase, PIV showed a reduced cell association compared with PII and control, indicating that PIV may require glycocomplexes and sphingolipids containing sialic acid to enter into the cells. DSC (Differential Scanning Calorimetry) and SPR (Surface Plasmon Ressonance) experiments using biomimetic membranes were performed using GM1 ganglioside to check this interaction. The results showed PIV and PII interact with GM1. This results also evidence PIV interact more hidrophobically and with a higher association rate on GM1 than PII.
2

Endocitose e transporte intracelular de isoformas da pulchellina / Endocytosis and cell transport of pulchellin isoforms

Heline Hellen Teixeira Moreira 26 April 2017 (has links)
A pulchellina é uma glicoproteína heterodimérica com duas cadeias, pertencente à família das proteínas inativadoras de ribossomos (RIPs) do tipo 2. A cadeia A é enzimaticamente ativa e é capaz de remover uma adenina da porção 28S do rRNA; a cadeia B é uma lectina que se liga a resíduos de D-Galactose terminais, presentes na membrana. Das 4 isoformas da pulchellina (PI, PII, PIII, PIV), PII é a mais tóxica in vivo, sendo a atividade catalítica da cadeia A similar para todas as isoformas. A interação da cadeia B com os glicoreceptores de membrana e seu conseguinte processo de endocitose é crucial para que cadeia A tóxica entre na célula e torne-se disponível para atuar no seu sítio ribossomal. Assim, visando explorar e encontrar potenciais diferenças no mecanismo de ligação à célula e de endocitose das isoformas, foram realizados experimentos usando microscopia confocal com as toxinas marcadas com Alexa flúor® em células HeLa e MV3. As imagens obtidas mostraram que PII localiza-se na região perinuclear das células enquanto PIV predomina na região cortical. Esses resultados sugeriram que as isoformas apresentam distintos mecanismos de entrada e transporte nas células. Para esclarecer tal questão, a ação da pulchellina em células HeLa tratadas com diversas drogas que atuam em diferentes rotas endocíticas e de translocação, foi monitorada. Os resultados de inibição de síntese proteica mostraram que as células sofrem proteção contra a pulchellina na presença de brefeldina A, indicando que a pulchellina necessita ser transportada via Golgi para executar sua função. Inibidores de glicosilação como tunicamicina, swainsonine e inibidores de síntese proteica, como a puromicina e cicloheximidina sensibilizaram as células à PII e PIV, mas em diferentes taxas. Por outro lado, a puromicina e a cicloheximidina não afetaram a taxa de endocitose das isoformas, o que indica que a pulchellina na ausência dos inibidores compete pelo transporte ou processamento de glicoproteínas recém-sintetizadas. Experimentos de ligação e captação da pulchellina mostraram que PII apresenta 30% menos afinidade pela superfície de células HeLa que PIV, além de apresentar menor taxa endocítica. Esses dados corroboram estudos de FCS (espectroscopia de correlação e fluorescência) que identificaram que a difusão de PIV em células HeLa é maior que de PII. Nos experimentos realizados com inibidores de dinamina, ambas isoformas tiveram as suas taxas de endocitose aumentadas, indicando um efeito compensatório para via endocítica independente de dinamina. Em células incubadas com PDMP e neuraminidase, PIV mostrou uma associação às células reduzida, enquanto PII não se alterou, indicando que PIV pode necessitar de esfingolipídeos e glicocomplexos contendo ácido siálico para ligar e se internalizar nas células testadas. Para investigar essa diferença na interação foram realizados ensaios in vitro de DSC (Calorimetria Diferencial de Varredura) e SPR (ressonância plasmônica de superfície) com as isoformas isoladas. Esses ensaios mostraram que PIV e PII apresentam interações distintas com o gangliosídeo GM1, sendo que a PIV interage mais hidrofobicamente e com uma maior taxa de associação com GM1 que a PII. / Pulchellin is a heterodimeric toxin found in Abrus pulchellus seeds. It is a type 2 ribosome inactivating protein, which consists of a toxic A-chain linked to a sugar binding B-chain. The B-chain mediates its binding to the galactose residues on the cellular membrane in a process that is then followed by an endocytic uptake. Once the A-chain reaches the cytosol it inhibits protein synthesis leading to cell death. In order to explore pulchellin isoforms II and IV (PII and PIV) cell entry and transport mechanisms, experiments monitoring toxin labelled with Alexafuor® in MV3 and HeLa cells were performed using confocal microscopy. We have investigated the pulchellin action in pre-treated HeLa cells with several drugs, targeting different endocytic and translocation routes. Confocal images showed PII tends to be localized in cells cortical region and PIV tend to be localized in cell\'s perinuclear region, suggesting that isoforms have different cell entry and transport mechanisms. The protein synthesis inhibition results showed that brefeldin A protects cells against the toxic effect of pulchellin, which indicates the pulchellin needs to be transported to Golgi to perform its toxic effect. When HeLa cells were incubated with protein synthesis inhibitors, such as puromycin and cycloheximidine and glycosilation inhibitors such as tunicamycin, swainsonine, they were sensitized to pulchellin, but to different extent for PII and PIV. Binding and uptake experiments showed that PII exhibits 30% less affinity than PIV on HeLa cells surface, PII also has lower endocytic rate than PIV in the cells. These data corroborate with FCS (Fluorescence Correlation Spectroscopy) results, which identified that PIV diffuses faster than PII into the celIs. Dynamine inhibitors increased endocytosis rates in both isoforms, indicating that pulchellin is upregulating the dynamine-independent endocytosis, possibly pulchellin is being internalized into the cells by alternative endocytic routes. When HeLa cells were incubated with PDMP and neuraminidase, PIV showed a reduced cell association compared with PII and control, indicating that PIV may require glycocomplexes and sphingolipids containing sialic acid to enter into the cells. DSC (Differential Scanning Calorimetry) and SPR (Surface Plasmon Ressonance) experiments using biomimetic membranes were performed using GM1 ganglioside to check this interaction. The results showed PIV and PII interact with GM1. This results also evidence PIV interact more hidrophobically and with a higher association rate on GM1 than PII.
3

Putative prokaryotic ribosome-recognition domains of pokeweed antiviral protein

Harman, Enver Erol January 1999 (has links)
No description available.
4

Rip current/cuspate shoreline interactions in Southern Monterey Bay

Woods, John E. 09 1900 (has links)
The interaction between rip channels and cuspate shoreline was examined by analyzing data obtained by the Naval Postgraduate School Imaging System (NAPSIS) during the winter of 2004-2005 in Southern Monterey Bay. Video imaging data was used to determine rip channel locations. The rip fields had constantly changing shapes and sizes, and the beach underwent a transformation from a Transverse-barred-beach (TBB) to a Longshore-bar-trough (LBT) state. Mean rip spacing was determined to be 173 and 258m respectively for the two different beach states (TBB and LBT). Directional wave spectra measured at the offshore NOAA buoy in deep water were refracted to the 10m depth contour at the actual study site. Estimated alongshore sediment transport, Qs, was calculated using the refracted wave data. The hypothesis that rip channel migration is due to alongshore sediment transport is qualitatively confirmed. Little or no migration occurred when Qs values were close to zero. Migration rates were calculated over a three week period during a time of high rip mobility with an average migration rate of 3.2m per day. The rip channel orientations were constantly changing. Three distinct rip channel shapes were common: straight, slanted, or C shaped. The rip channels tended to slant in the opposite direction of the estimated sediment transport, since the rip channels migrated more rapidly at their base (nearest to shore) and more slowly offshore. The hypothesis that the mega-cusps on the beach are erosional features of rip currents was tested by crosscorrelating the 2m beach contour obtained using GPS beach surveys with an alongshore video pixel intensity line. During a time of steady rip channel migration, it was found on average that the cusps lagged the rip channels by 50m with a maximum correlation near one. Assuming the system is in steady state, a response time of 14.7 days was obtained by dividing the lag distance by the average migration rate.
5

Rip channel migration in the nearshore

Minetree, Courtney M. 09 1900 (has links)
Video imaging data generated from the Naval Postgraduate School Imaging System (NAPSIS) during November 2004 to June 2006 was analyzed to determine the location of rip channels and track their morphology. During the study period, the rip fields constantly changed in shape, size, and location. Rip channels were found to have a mean migration southward at a rate of 0.16 meters per day with a standard deviation of 7.6 meters per day and maximum rates varying between approximately 30 meters per day north and 30 meters per day south. The migration exhibited a strong seasonal variation with southerly shifts in the fall and winter months, northerly shifts in the late winter and early spring months, and no significant shift in the late spring and summer months. Directional wave spectra measured every hour at the offshore NOAA buoy were refracted to the 10 meter depth contour at Marina and Sand City and compared with measured spectra at these locations. The significant wave heights at both locations exhibited a correlation of 0.94. Mean wave directions for Marina and Sand City were found to have correlations of 0.83 and 0.34, respectively. These refracted data were then used to calculate sediment transport rates at Stillwell Hall, Fort Ord. Rip channel migration and calculated sediment transport rates were correlated at 0.8, qualitatively confirming the hypothesis that the migration rate of rip channels is a function of modeled alongshore sediment transport. The sometimes rapid migration of these large scale morphological features is critical to the successful planning and execution of U.S. Navy and Marine Corps beach assaults and the operation of mine warfare. Because amphibious and special forces operate mainly in shallow areas, the modeling of rip current direction and magnitude contributes greatly to effective mission organization and accomplishment. In addition to causing mines to drift, rip currents transport sediment that can cause the underlying morphology to change, possibly covering bottom mines and creating a potential hazard for military forces operating in the area. Being able to predict where mines may be drifting and how much sediment has concealed them is a necessity in securing a littoral battlespace.
6

The Role of Caspase-8 in Oligodendrocyte Development and Mechanisms of Oxidative Injury in Neurons and Glia

Thompson, Jeffrey 14 March 2013 (has links)
Apoptosis is essential not only to the normal development of a multicellular organism but also for the maintenance of tissue homeostasis. This proposal seeks to investigate, in part, the role of oligodendrocyte (OL) apoptosis in myelination. We used an OL-specific conditional knockout animal to study caspase-8 function in OL development; analyzing histological differences in myelination at postnatal day 10 and alterations to OL proliferation, differentiation, and cell death in culture. Our preliminary data suggests that deletion of caspase-8 did not alter OL proliferation or differentiation in culture, but reduced the percentage of apoptotic cells following nutrient deprivation. In vivo, we found an increase in myelinated axons in the spinal cord of caspase-8 deficient mice, indicating a role for caspase-8 in the myelination process. This study also seeks to investigate mechanisms of cell death in OLs, astrocytes, and neurons following oxidative injury. Exposure of primary OLs, astrocytes, and neurons to arachidonic acid (AA) resulted in oxidative stress and cell death. Necrostation-1, the specific inhibitor of receptor interacting protein kinase 1 (RIP-1), markedly prevented AA-induced oxidative death in OLs and astrocytes, but not in neurons. Similarly, we found that blockade of 12-lipoxygenase (LOX) and c-Jun N-terminal kinase (JNK) protected OLs and astrocytes but not neurons against AA toxicity. Consistent with the inability of necrostatin-1 to rescue neurons, we found very low expression of RIP-1 as well as RIP-3 in neurons. Finally, the zinc chelator TPEN effectively abolished AA-induced oxidative death in all three cell types, suggesting zinc release as a common mechanism. Taken together, our findings indicate differences in cell death mechanisms following oxidative injury in astrocytes, OLs, and neurons.
7

Variations in Nearshore Bar Morphology: Implications for Rip Current Development at Pensacola Beach, Florida from 1951 to 2004

Barrett, Gemma Elizabeth 2011 August 1900 (has links)
In 2002, Pensacola Beach was identified by the United States Lifesaving Association as being the most hazardous beach in the continental United States for beach drowning by rip currents. Recent studies suggest that the rip currents at Pensacola Beach are associated with a transverse bar and rip morphology that develops with the migration of the bars and recovery of the beachface following an extreme storm. Combined with an alongshore variation in wave forcing by transverse ridges on the inner-shelf, the bar cycle (of bar response and recovery to extreme storms) is hypothesized to create both rip current hotspots and periods of rip activity. However, it is unknown at what stage, or stages, the bar cycle is associated with the formation of these hotspots and the greatest number of rips. To determine how the accretional rip hazard varies in response to the nearshore bar cycle, this thesis will quantify the alongshore variation in the nearshore bar morphology on Santa Rosa Island from 1951 to 2004. Aerial photographs and satellite images are collected for the study area and nearshore features are digitized in ArcGIS and evaluated using wavelet analysis. Specifically, a continuous wavelet transform is used to the identify times and locations when a transverse bar and rip morphology is present or is in the process of developing. The findings suggest that the rip-scale variation in bar morphology (~100-250m) is superimposed on an alongshore variation consistent with the scale of the transverse ridges (~1000m). From the outer bar to the shoreline, and as the bar migrates landward, the variation becomes increasingly dominated by the rip-scale variation. Hotspots of rip current activity were found consistently between years at Fort Pickens Gate, San Souci, Holiday Inn, Casino Beach, Avenida 18 and Portofino, as clusters of rip-scale variation.
8

Long non-coding RNAs interact with PRC1 to impact Polycomb group protein recruitment and expression of Polycomb regulated genes

Ray, Mridula Kumari 04 February 2016 (has links)
Long non-coding RNAs (lncRNAs) are increasingly recognized as important regulators of genomic processes and cellular specification. Many lncRNAs regulate chromatin by functionally impacting the epigenetic state through direct interactions with chromatin-modifying proteins. We developed a protocol to enrich for chromatin-lncRNA interactions and used this technique to identify several candidate lncRNAs that interact with the Polycomb group (PcG) proteins. Our immunoprecipitation protocol uses a crosslinked chromatin fraction as the input and employs stringent washes and cross-validation techniques to dramatically decrease mRNA signal (as a metric of transient interactions or false positives), and increase the dynamic range of conventional RNA immunoprecipitation protocols. Applying this protocol to the PRC1 component Bmi1, we have identified 11 PcG-interacting lncRNA candidates whose expression impacts the transcription of many other chromatin factors and PcG targets. We focus on knockdown of one lncRNA candidate, CAT7, which increases expression of several homeobox-containing transcription factors as well as chromatin interacting proteins, including Trithorax group proteins, Jumanji-domain containing proteins, and PcG-like proteins in HeLa cells. Consistent with the observed increase in gene expression, knockdown of CAT7 decreases PcG binding (Suz12, H3K27me3 and Bmi1) at the promoter of the homeodomain protein Mnx1, located at the boundary of an adjacent gene desert. During early motor neuron differentiation from embryonic stem cells, knockdown of CAT7 is accompanied by changes in expression of master regulators of neuronal specification: increased upregulation Mnx1, upregulation of Isl1, and downregulation of Irx3, as well as changes in expression to several other PcG-regulated targets. Overall, this protocol is the first of its kind to efficiently identify de novo interactions between the PcG proteins and lncRNAs which impact PcG binding or PcG target gene expression.
9

Proteínas inativadoras de ribossomos: identificação de novas proteínas e estudos de interação da cadeia-A da pulchellina (PAC) com monocamada de Langmuir / Ribosome inactivating proteins: identification of new members and studies of the interaction of pulchellin A-chain (PAC) with Langmuir monolayers

Reyes, Luis Fernando 29 March 2011 (has links)
Proteínas Inativadoras de Ribossomos (RIPs) são rRNA N-glicosilases capazes de inibir a síntese protéica pela remoção de uma adenina específica do RNA ribossomal. São geralmente classificadas em tipo 1 e tipo 2, sendo as últimas divididas em altamente tóxicas e não tóxicas. A maior parte das RIPs tipo 2 identificadas pertence a espécies de dicotiledôneas, como é o caso da pulchellina. As cadeias tóxicas das RIPs possuem uma região C-terminal hidrofóbica conservada, a qual se atribui a capacidade de interação com a membrana do retículo endoplasmático (RE), durante o transporte retrógrado da toxina para o citosol. Neste trabalho duas abordagens diferentes foram aplicadas para o estudo das RIPs tipo 2: identificação e caracterização de novos integrantes desta família de proteínas, e investigação da interação da cadeia-A da pulchellina (PAC) com sistemas miméticos da membrana celular. Na primeira abordagem, uma busca in silico em bancos de dados genéticos públicos permitiu identificar quatro novas RIPs do tipo 2 de monocotiledôneas. A análise da estrutura primária das proteínas identificadas mostrou a ocorrência de mutações em alguns dos principais aminoácidos que formam o sítio ativo nas RIPs, indicando uma possível perda de função. O representante de Saccharum officinarum (cana-de-açúcar) foi então analisado em maior detalhe, sendo sua cadeia-A clonada (soRIPA), expressa em sistema heterólogo e caracterizada em termos de atividade e estrutura secundária. Os ensaios in vitro mostraram que a soRIPA não foi capaz de depurinar ribossomos eucariotos. Porém, os ensaios de inibição da síntese proteica mostraram uma possível atividade inibitória da soRIP, que precisa ainda ser confirmada. A presença dos transcritos no banco do SUCEST sugere que estes genes não sejam pseudogenes, embora não tenha sido possível purificar a proteína a partir de extratos de folhas. Isto indica que se a soRIP está sendo traduzida, deve sofrer um rápido turnover, tornando difícil a sua detecção e purificação ou, ainda, que a ausência de sítios de ligação à galactose funcionais na cadeia-B impediu sua purificação por cromatografia de afinidade à galactose. A outra abordagem no estudo das RIPs tipo 2 foi centrada na cadeia-A recombinante da pulchellina (rPAC), estudando sua interação com monocamadas de Langmuir. Foram construídos 3 mutantes da rPAC, cada um com diferentes deleções na região C-terminal visando determinar a região responsável pela interação com a membrana do RE. A cinética de adsorção e pressão superficial exercida pela rPAC sobre a monocamada, assim como o estudo com os mutantes demontraram que a proteína interage fortemente com a monocamada fosfolipídica e que esta interação in vitro é dependente da presença da região C-terminal. De forma geral, os resultados obtidos neste trabalho contribuíram com novas informações sobre esta família de proteínas, identificando e analisando novos integrantes e, ainda, adicionando detalhes do mecanismo funcional do tráfego das toxinas RIPs. / Ribosome Inactivating Proteins (RIPs) are rRNA N-glycosilases which are able to inhibit the protein synthesis by removing a specific adenine from the ribosomal RNA. They are usually classified as type 1 and type 2, being the latter divided into highly toxic and nontoxic. The majority of type 2 RIPs currently identified are found in species of dicotyledons, as the pulchellin. The toxic chain of RIPs has a conserved hydrophobic C-terminal region, which is believed to be responsible for the interaction with the lipid membrane of the endoplasmic reticulum ER during the retrograde transport of the toxin to the cytosol. In this work, two different approaches were applied in the study of type 2 RIPs: identification and characterization of new members of this protein family, and investigation of the interaction of the pulchellin\'s A-chain (PAC) with systems that mimic the cellular membrane. In the first approach, an in silico search in public genetic databases was performed and allowed us to identify four new type 2 RIPs in monocots. The primary structure analysis of the identified proteins showed the presence of mutations in key amino acids that form the active site of RIPs, indicating a possible interference on its catalytic activity. The representative of Saccharum officinarum (sugar cane) was then analyzed in greater detail. Its A-chain clone (soRIPA) was expressed in a heterologous system and characterized in terms of activity and secondary structure. In vitro experiments showed that soRIPA was not able to perform the depurination of eukaryotic ribosomes. However, the inhibition of protein synthesis assays presented a possible low inhibitory activity of the soRIP, which still needs to be further investigated. The presence of transcripts on the bank of SUCEST indicates that these genes are not pseudogenes, although it was not possible to purify the protein from leaf extracts. If the soRIP is being translated, this may indicate that it undergoes a quick turnover, preventing its detection and purification. It is also possible that the absence of functional galactose binding sites in the B-chain has prevented its purification by galactose affinity chromatography. Our second approach to the study of type 2 RIPs was focused on the recombinant pulchellin A-chain (rPAC), by investigating its interaction with Langmuir monolayers. We have constructed three mutants of rPAC, each one with different deletions at the C-terminal to determine the region responsible for interaction with the membrane of the ER. The adsorption kinetic and surface pressure applied by rPAC on the monolayer, as well as the study of the mutants, have demonstrated that the protein has a strong interaction with the phospholipid monolayer and that this interaction in vitro is dependent on the presence of the C-terminal. The results of this work have provided new information about the type 2 RIP protein family, identifying and analyzing new members, and also bringing new details about the functional mechanism of the RIP\'s toxin traffic.
10

Rip Channel Morphodynamics at Pensacola Beach, Florida

Labude, Daniel 14 March 2013 (has links)
80% of all lifeguard related rescues along the beaches of northwest Florida are believed to be related to rip currents. A rip current is the strong flow of water, seaward extending from the beach to the breaker line. It has previously been shown that there are rip current hot spots at Pensacola Beach, forced by a ridge and swale topography offshore, but the annual evolution/behavior of these hotspots (i.e. location, size, frequency, and orientation) have not been examined in detail. Remote imagery from Casino Beach was rectified to a planar view in order to examine the rip channel characteristics. These characteristics were analyzed to determine variations and patterns on a daily, monthly, and seasonal basis and in relation to reset storms, wind and wave characteristics, and the beach states of Casino Beach in order to characterize the rip development and variation throughout a year. Beach states and rip configurations were impacted by many frontal storms and one tropical storm, which were classified as a reset storm when reconfigurations of the beach state and rips occurred. Given sufficient time between reset storms, the bar migrated onshore in a manner consistent with the Wright and Short (1984) model, transitioning from LBT, to RBB, and finally to TBR state. The lack of reset storms after March 2010 resulted in a large frequency of observed rip channels (64) between April and May. It is shown that these rip channels are clustered into 7 statistically significant groups based on their location alongshore at the 95 % confidence interval. It is argued that the rip channel clusters are a direct result of the wave forcing caused by the ridge and swale topography. This situation causes the bar to move onshore that without interruption of a reset storm will attach at certain locations creating a transverse bar and rip morphology. The bar appears to attach to the beach at consistent locations throughout the year creating similar rip locations and subsequently the rip clusters. The risk posed to beach users by these rip currents is concentrated in certain locations which are persistent throughout the year.

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