Artificial reefs are important management tools for red snapper, Lutjanus campechanus, fisheries in the Northern Gulf of Mexico. I deployed fish traps (0.97 m long; 0.64 m height; 175 x 115 mm funnel mouth size) to collect red snapper < 406 mm total length (TL) associated with pyramid-shaped artificial reef structures (3.7 m triangular base; 2.4 m height; 3.2 metric tons) to evaluate two reef distribution designs: (1) five closely-spaced pyramid units, and (2) five closely-spaced pyramids with two sets of two pyramids at 30.5, 61.0, and 91.5 m from the five pyramids. In 26 sampling trips, 927 red snapper were captured. Catch per unit effort (fish/hour) did not differ significantly among patterns (P= 0.396). Red snapper lengths differed significantly among patterns (P= 0.005), with the largest mean total length (235 mm, SE= 5.14) occurring at the pattern with 61.0-m spacing.

The Eastern box turtle (Terrapene carolina carolina) is one of the most common reptiles in North America, but is soon to be threatened due to increased urbanization, disease, and the pet and food trades. In order to assist resource managers in choosing suitable sites for relocation studies, more information on the winter ecology of this species is necessary. We examined the temperature tolerance, microhabitat and degree of philopatry to hibernacula for juvenile and adult E. box turtles for two consecutive winters in Charles City Co, VA. The turtles were tracked via radio telemetry to record point locations during the active and inactive seasons. iButton data loggers were attached to each turtle to record temperature throughout winter. Vegetation data were collected and analyzed to determine if there are microhabitat differences between adult and juvenile turtles, and between occupied and random plots. Philopatry to wintering hibernacula was determined by measurements in the field and using ArcGIS. Adults had significantly higher minimum temperatures than juveniles during the first winter (P=0.027), but not during the second winter (P=0.327). Shrub and canopy cover were marginally higher for random plots than for occupied turtle hibernacula plots (P=0.066 and P=0.092, respectively); however there were no significant differences for any of the vegetation variables between adults and juveniles. Some of the turtles demonstrated site fidelity of their hibernacula. The temperature data from this study suggests that juveniles may have poorer hibernacula selection and therefore lower minimum temperatures compared with adults, but this was not seen in our second season suggesting that juvenile turtles may learn to choose better hibernacula or to dig deeper. The difference in findings for the two winters could be attributed to illness by several of the turtles the first winter, by increased maturity in the juveniles the second winter or by the significant difference in ambient temperature for the two winters (P=0.0001). Juveniles do not differ from adults in microhabitat selection, therefore resource managers may not need to plan differently for juveniles and adults in relocation studies. We also conclude that both age groups of T. c. carolina exhibit site fidelity of hibernacula.

Developing appropriate management plans for species at risk requires information about their population structure and abundance. For most cetacean populations, few reliable population estimates are available and even fewer distributions have been mapped. Accurate abundance estimates can be determined from capture-recapture data if assumptions are met, however this can be difficult when the animal in question demonstrates both strong site fidelity and large-scale migrations, and different models can result in dramatically different results. I explored these issues by examining a 15-year dataset (1992-2006) of photo-identifications of humpback whales (Megaptera novaeangliae) in British Columbia (BC), Canada. I used multiple capture-recapture models to compare how the definition of population and variation in effort affected estimates of population size, and I explored means to correct for these biases. I also considered stock structure by examining individual breeding ground destinations, movement, and localized site-fidelity within BC. Across the six models considered, the BC humpback whale abundance in 2006 ranged between 1,428 and 3,856 individuals. The Lincoln-Petersen estimate (1,428-1,892) likely best described the number of humpback whales in BC during summer 2006. The effort-standardized Jolly-Seber model (1,970-2,331) is more representative of the larger population of humpback whales that uses or passes through BC over multiple years. Ultimately, selecting the best estimation model requires defining the ‘population’ of interest and accounting for spatial and temporal distribution of sampling effort. British Columbia provides feeding habitat and a potential migratory corridor for whales that breed in the northeastern Pacific Ocean. Forty-four percent of the 1,986 humpback whales considered were sighted in BC in more than one year. Identifications were highest from May to October, with a peak in September, but humpback whales were present in BC in all months of the year. Whales showed strong site fidelity with a median re-sighting distance of 75 km between years, and a maximum re-sighting distance that ranged from 0.41 km to 842 km. Matching rate within BC decreased as a function of north-south distance, though no clear north-south boundary could be established. Stock structure of humpback whales in British Columbia is complex and should be considered in managing this population.

Human-caused destruction of xeric habitats in Florida that support gopher tortoises (Gopherus polyphemus Daudin) is occurring at a rapid rate. One conservation strategy that has been used for numerous taxa is translocation. The effects of translocation on the health, reproductive activity, and movements of translocated and resident telemetered individuals was evaluated for a population of gopher tortoises in central-Florida from 2001 to 2004. Only one of the 13 individuals released left the site during the study. The home range estimates of resident individuals were not significantly different before and after the release of the translocated individuals on the site, and all mean home ranges fit within the range of estimates reported in the literature for natural populations of gopher tortoises. Habitat use of several individual resident gopher tortoises was significantly different after the translocation events. The degree that the home ranges of the residents were overlapped by other individuals in the study was not significantly different. The spatial locations of the home ranges of resident and translocated individuals were significantly different. There was evidence of reproduction for both resident and translocated females a year after the release of the translocates. The body condition of the resident individuals was higher at the end of the study relative to the start, although this may be explained by other factors. This study illustrates some of the problems associated with studies designed to assess translocation success, namely the lack adequate baseline data for the population and the challenge of balancing the sample sizes necessary for acceptable statistical power with the mechanics of translocation. The results of this study suggest that translocation is a potentially useful conservation strategy, although there are other potential consequences of translocation that need to be considered prior to its implementation.

A small number of eastern north Pacific gray whales (Eschrichtius robustus), known as the Pacific Coastal Feeding Group (PCFG) forage during the summer months in the coastal waters between California and Alaska. Although several studies have analyzed the population structure of the PCFG, maternal learning and predator/prey dynamics have not been studied in detail. In this study I characterize fine scale habitat use and site fidelity of eastern north Pacific gray whales in one foraging site within the PCFG’s foraging range. I approach this study by examining site fidelity to Clayoquot Sound in increasing detail at different time scales. Using the variability recorded in 17 field seasons of whale census surveys (1997-2013) as a proxy for fluctuations in prey, I suggest that the combination of physical properties of the study area and the life history characteristics of the primary prey species type enable Clayoquot Sound to persist as a foraging site through time. The analysis of photographic identification data collected between 1998-2013 indicates that Clayoquot Sound is one site within a larger foraging range, and that annual fluctuations in prey density are related to site fidelity and residency time. By identifying cow/calf pairs using photographic identification data collected between 1998-2013 I characterize internal recruitment via maternal learning within Clayoquot Sound. A calf’s site fidelity is related to its mother’s site fidelity, but its residency time is related to annual fluctuations in prey density. In contrast, a cow’s residency time is not related to changes in prey, but increases in duration when accompanied by a calf. The interplay between fluctuations in prey productivity, and the age and gender of individuals, are the variables that most likely influence the distribution of PCFG whales intra- and inter-annually. / Graduate / 0306

Developing appropriate management plans for species at risk requires information about their population structure and abundance. For most cetacean populations, few reliable population estimates are available and even fewer distributions have been mapped. Accurate abundance estimates can be determined from capture-recapture data if assumptions are met, however this can be difficult when the animal in question demonstrates both strong site fidelity and large-scale migrations, and different models can result in dramatically different results. I explored these issues by examining a 15-year dataset (1992-2006) of photo-identifications of humpback whales (Megaptera novaeangliae) in British Columbia (BC), Canada. I used multiple capture-recapture models to compare how the definition of population and variation in effort affected estimates of population size, and I explored means to correct for these biases. I also considered stock structure by examining individual breeding ground destinations, movement, and localized site-fidelity within BC. Across the six models considered, the BC humpback whale abundance in 2006 ranged between 1,428 and 3,856 individuals. The Lincoln-Petersen estimate (1,428-1,892) likely best described the number of humpback whales in BC during summer 2006. The effort-standardized Jolly-Seber model (1,970-2,331) is more representative of the larger population of humpback whales that uses or passes through BC over multiple years. Ultimately, selecting the best estimation model requires defining the ‘population’ of interest and accounting for spatial and temporal distribution of sampling effort. British Columbia provides feeding habitat and a potential migratory corridor for whales that breed in the northeastern Pacific Ocean. Forty-four percent of the 1,986 humpback whales considered were sighted in BC in more than one year. Identifications were highest from May to October, with a peak in September, but humpback whales were present in BC in all months of the year. Whales showed strong site fidelity with a median re-sighting distance of 75 km between years, and a maximum re-sighting distance that ranged from 0.41 km to 842 km. Matching rate within BC decreased as a function of north-south distance, though no clear north-south boundary could be established. Stock structure of humpback whales in British Columbia is complex and should be considered in managing this population.

Many bird populations are known to show strong territoriality as well as high site fidelity during breeding. The Common Nightingale (Luscinia megarhynchos) is one of many such migratory species that annually occupies the same favourable habitat. Especially dominant males prefer to breed in the same area every year, and high fidelity probably assures high breeding success. This study aims to investigate breeding biology, population size and spatial distribution of nightingales at a small area in Yalincak within the METU campus grounds (Ankara, Turkey). From 2003 to 2005, birds were captured and marked with metal or colour rings or radio tags for monitoring. Analyses were carried out on 77 individuals, including ringing data from the previous two years. Phenology of the study population was characterized by early arrival of males in late April, followed one week later by females. Nesting immediately followed and the first young fledged in early June. Second broods were also recorded. Most birds apparently left for the south within August. The population in the 2.65 ha large area was estimated to be about 20-25 individuals. However, only 2-4 breeding territories were present and a large proportion of floaters existed. Territory sizes were smaller than reported elsewhere. Annual survival rate was 0.424 &amp / #61617 / 0.121. Contrary to previous knowledge, taxonomically the Yalincak population belonged to subspecies africana although more westerly subspecies could be recorded during migration. This study revealed the importance of small but productive biotopes as important breeding habitats for passerines. It also showed that a few highly successful individuals may contribute out of proportion to the next generation.

Developing appropriate management plans for species at risk requires information about their population structure and abundance. For most cetacean populations, few reliable population estimates are available and even fewer distributions have been mapped. Accurate abundance estimates can be determined from capture-recapture data if assumptions are met, however this can be difficult when the animal in question demonstrates both strong site fidelity and large-scale migrations, and different models can result in dramatically different results. I explored these issues by examining a 15-year dataset (1992-2006) of photo-identifications of humpback whales (Megaptera novaeangliae) in British Columbia (BC), Canada. I used multiple capture-recapture models to compare how the definition of population and variation in effort affected estimates of population size, and I explored means to correct for these biases. I also considered stock structure by examining individual breeding ground destinations, movement, and localized site-fidelity within BC. Across the six models considered, the BC humpback whale abundance in 2006 ranged between 1,428 and 3,856 individuals. The Lincoln-Petersen estimate (1,428-1,892) likely best described the number of humpback whales in BC during summer 2006. The effort-standardized Jolly-Seber model (1,970-2,331) is more representative of the larger population of humpback whales that uses or passes through BC over multiple years. Ultimately, selecting the best estimation model requires defining the ‘population’ of interest and accounting for spatial and temporal distribution of sampling effort. British Columbia provides feeding habitat and a potential migratory corridor for whales that breed in the northeastern Pacific Ocean. Forty-four percent of the 1,986 humpback whales considered were sighted in BC in more than one year. Identifications were highest from May to October, with a peak in September, but humpback whales were present in BC in all months of the year. Whales showed strong site fidelity with a median re-sighting distance of 75 km between years, and a maximum re-sighting distance that ranged from 0.41 km to 842 km. Matching rate within BC decreased as a function of north-south distance, though no clear north-south boundary could be established. Stock structure of humpback whales in British Columbia is complex and should be considered in managing this population. / Science, Faculty of / Zoology, Department of / Graduate

Fish can have complex life histories and use multiple habitats and resources throughout their life span. Consequently, their life histories are often poorly understood. The Atlantic Tarpon, Megalops atlanticus, is a large, typically migratory, elopomorph fish that is both ecologically and economically important. Atlantic Tarpon are under threat due to regional exploitation, loss of natal and juvenile habitat, poor water management, and offshore impacts. In addition, little is known about its lifelong habitat and resource use. In Chapter 1, I used stable isotope analysis of eye lens δ13C and δ15N values to explore patterns in trophic history and habitat use of 16 Atlantic Tarpon from West-Central Florida and Louisiana. The stable isotope chronologies showed 100% use of backcountry habitats during the early life history and an ontogenetic habitat shift to coastal waters at approximately 10 years of age and 140 cm total length. During the coastal phase Atlantic Tarpon displayed among-individual variability and within-individual consistency in basal resource use. In Chapter 2, mark-recapture data from a multi-year genetic tagging program were used to investigate survival and growth rates, ontogenetic habitat use, and migration of juvenile Atlantic Tarpon in Florida. The study found that juvenile Atlantic Tarpon take approximately 10 years to reach the length associated with maturity, and appear to have a high survival rate (~80%), possibly due to effective use of habitats with reduced competition and predation. Atlantic Tarpon underwent several ontogenetic habitat shifts throughout the juvenile phase. In addition, juvenile Atlantic Tarpon did not migrate long distances but instead showed fidelity to systems wherein only short movements were needed to shift habitat types. This work serves to fill critical gaps in our knowledge of Atlantic Tarpon life history and may aid in better management and conservation of the species.

Cyclura ricordii is an endemic iguana from Hispaniola and is listed as Critically Endangered on the IUCN. The main threats are predation by introduced mammals, habitat destruction and hunting. The present study focused on two nesting areas in Pedernales in the Dominican Republic. The hypothesis tested is that natal philopatry influences dispersal and nest site selection. Monitoring and sampling took place during 2012-2013. Polymorphic markers were used to evaluate whether natal philopatry limits dispersal at multiple spatial scales. Ripley’s K, revealed that nests were significantly clustered. Hierarchical AMOVA revealed that nest site aggregations did not explain a significant portion of genetic variation. However, Mantel’s tests revealed significant positive correlations between genetic and geographic distance. These results indicate that natal philopatry limits dispersal at a course spatial scale, but does not influence nest site selection at a fine spatial scale.