In dieser Arbeit wurde die durch Bestrahlung mit schnellen Neutronen bedingte Materialalterung von Reaktordruckbehälterstählen untersucht. Das Probenmaterial umfasste unbestrahlte, bestrahlte und ausgeheilte RDB-Stähle russischer und westlicher Reaktoren sowie Eisenbasis-Modelllegierungen. Mittels Neutronen-Kleinwinkelstreuung ließen sich bestrahlungsinduzierte Leerstellen/Fremdatom-Cluster unterschiedlicher Zusammensetzung mit mittlerem Radius um 1.0 nm nachweisen. Ihr Volumenanteil steigt mit der Strahlenbelastung monoton, aber im allgemeinen nicht linear an. Der Einfluss der Elemente Cu, Ni und P auf den Prozess der Clusterbildung konnte herausgearbeitet werden. Eine Wärmebehandlung oberhalb der Bestrahlungstemperatur reduziert den Anteil der Strahlendefekte bis hin zu deren vollständiger Auflösung. Die Änderungen der mechanischen Eigenschaften der Werkstoffe lassen sich eindeutig auf die beobachteten Gefügemodifikationen zurückführen. Die abgeleiteten Korrelationen können als Hilfsmittel zur Vorhersage des Materialverhaltens bei fortgeschrittener Betriebsdauer von Leistungsreaktoren mit herangezogen werden.

2'-5'-oligoadenylate synthetases (OAS) are interferon-stimulated proteins that act in the innate immune response to viral infection. Upon binding to viral double-stranded RNAs, OAS enzymes produce 2'-5'-linked oligoadenylates that stimulate RNase L and ultimately slow viral propagation. Studies have linked mutations in the OAS1 gene to increased susceptibility to West Nile virus (WNV) infection, highlighting the importance of the OAS1 enzyme. Here I report that the 5'-terminal region (5'-TR) of the WNV genome, comprising both the 5'-untranslated region (5'-UTR) and initial coding region, is capable of OAS1 activation in vitro. This region contains three RNA stem loops (SLI, SLII, and SLIII), whose relative contribution to OAS1 binding affinity and activation were investigated using electrophoretic mobility shift assays and enzyme kinetics experiments. Stem loop I (SLI) is dispensable for maximum OAS1 activation, as a construct containing only SLII and SLIII was capable of enzymatic activation. Mutations to the RNA binding site of OAS1 confirmed the specificity of the interaction. Solution conformations of both the 5'-TR RNA of WNV and OAS1 were then elucidated using small-angle x-ray scattering. I also report that the 3' terminal region (3'-TR) is able to mediate specific interaction with and activation of OAS1. Binding and kinetic experiments identified a specific stem loop within the 3'-TR that is sufficient for activation of the enzyme. The solution confirmation of the 3'-terminal region was determined by small angle X-ray scattering, and computational models suggest a conformationally restrained structure comprised of a helix and short stem loop. Structural investigation of the 3'-TR in complex with OAS1 is also presented. Finally, we show that genome cyclization by base pairing between the 5'- and 3'-TRs, a required step for replication, is not sufficient to protect WNV from OAS1 recognition. The purity, monodispersity and homogeneity of all samples subjected to SAXS analysis were evaluated using dynamic light scattering and/or analytical ultra-centrifuge. These data provide a framework for understanding recognition of the highly structured terminal regions of a flaviviral genome by an innate immune enzyme. / October 2015

Porous, high surface area activated carbon (AC) can be used to remove certain irritating and toxic gases from contaminated air streams. Impregnating AC with carefully selected chemicals can improve ACs adsorption capacity for certain gases and provide adsorption capacity for gases that un-impregnated AC cannot fi lter. Impregnated activated carbons (IACs) and ACs can be used as the active component in respirators. Comparative studies of di fferent commercially available AC samples and of IAC samples, prepared from a wide variety of di fferent chemicals, were performed. The gas adsorption capacity of the samples was tested using sulfur dioxide (SO2), ammonia (NH3), hydrogen cyanide (HCN) and cyclohexane (C6H12) challenge gases and compared to results obtained from a commercially available broad spectrum respirator carbon. The samples were characterized using wide angle x-ray di raction (XRD), small angle x-ray scattering (SAXS), nitrogen adsorption isotherms, thermal gravimetric analysis (TGA) and scanning electron microscopy (SEM). Highlights of this work include the discovery of a IAC sample prepared from zinc nitrate (Zn(NO3)2) and nitric acid (HNO3) that, after heating at 180 C under argon, had overall dry gas adsorption capacity that was greater than the commercially available sample. The importance of pore size on the C6H12 adsorption capacity of AC was demonstrated using SAXS and nitrogen adsorption data. A relationship between decreased humid C6H12 capacity and pre-adsorbed water was shown using SAXS, TGA and gravimetric studies.

No description available.

<p>Small-angle X-ray scattering (SAXS) is a biophysical technique that allows one to study the statistical conformation of a biopolymer in solution. The two-dimensional data obtained from SAXS is a low-resolution probe of the statistical conformation- it is a population weighted orientational average of all conformers within a conformational ensemble. Traditional biological SAXS experiments seek to describe an "average" structure of a protein, or enumerate a "minimal ensemble" of a protein at the atomic resolution scale. However, for highly flexible proteins, an average structure or minimal ensemble may be insufficient for enumeration of conformational space, and may be an over-parameterized model of the statistical conformation. This work describes a SAXS analysis of highly flexible proteins and presents a protocol for describing the statistical conformation based on minimally parameterized polymer physics models and judicious use of ensemble modeling. This protocol is applied to the structural characterization of S. aureus protein A - a crucial virulence factor - and Fibronectin III domains 1-2 - an important structural protein.</p> / Dissertation

Light scattering is a powerful characterization tool for determining shape, size, and size distribution of fine particles, as well as complex, irregular structures of their aggregates. Small angle static light scattering and elliptically polarized light scattering techniques produce accurate results and provide real time, non-intrusive, and in-situ observations on prevailing process conditions in three-dimensional systems. As such, they complement conventional characterization tools such as SEM and TEM which have their known disadvantages and limitations. In this study, we provide a thorough light scattering analysis of colloidal tungsten trioxide (WO3) nanoparticles in the shape of irregular nanospheres and cylindrical nanowires, and of the resulting aggregate morphologies. Aggregation characteristics as a function of primary particle geometry, aspect ratio of nanowires, and the change in dispersion stability in various polar solvents without the use of dispersants are monitored over different time scales and are described using the concepts of fractal theory. Using forward scattered intensities, sedimentation rates as a result of electrolyte addition and particle concentration at low solution pH are quantified, in contrast to widely reported visual observations, and are related to the aggregate structure in the dispersed phase. For nanowires of high aspect ratios, when aggregate structures cannot directly be inferred from measurements, an analytical and a quasiexperimental method are used.

Electrochemical capacitors, now often termed supercapacitors, are high power electrochemical energy storage devices that complement or replace high power batteries in applications ranging from wind turbines to hybrid engines to uninterruptable power supplies to electronic devices. My dissertation explores the applications of relatively uncommon techniques for both supercapacitor material syntheses and gaining better mechanistic understanding of factors impacting electrochemical performance of supercapacitors. From fundamental ion electroadsorption studies made possible by using small angle neutron scattering (SANS), to the systematic investigations of coating thickness and microstructure in metal oxide / carbon nanocomposite electrodes realized through the novel use of the atomic layer deposition (ALD) technique, new avenues of material characterization and fabrication have been studied. In this dissertation I first present the motivation to expand the knowledge of supercapacitor science and technology, and follow with an in-depth literature review of the state of the art. The literature review covers different types of supercapacitors, the materials used in the construction of commercial and exploratory devices, an exploration of the numerous factors which affect supercapacitor performance, and an overview of relevant materials synthesis and characterization techniques The technical objectives for the work performed in this dissertation are then presented, followed by the contributions that I made in this field in my two primary research thrusts: advances to the understanding of ion electroadsorption theory in both aqueous and organic electrolytes through the development of a SANS-based methodology, and advances to metal-oxide carbon nanocomposites as electrodes through the use of ALD. The understanding of ion electro-adsorption on the surface of microporous (pores < 2 nm) solids is largely hindered by the lack of experimental techniques capable of identifying the sites of ion adsorption and the concentration of ions at the nanoscale. In the first research thrust of my dissertation, I harness the high penetrating power and sensitivity of neutron scattering to isotope substitution to directly observe changes in the ion concentration as a function of the applied potential and the pore size. I have conducted initial studies in selected aqueous and organic electrolytes and outlined the guidelines for conducting such experiments for the broad range of electrode-ions-solvent combinations. I unambiguously demonstrate that depending on the solvent properties and the solvent-pore wall interactions, either enhanced or reduced ion electro-adsorption may take place in sub-nanometer pores. More importantly, for the first time I demonstrate the route to identify the critical pore size below which either enhanced or reduced electrosorption of ions takes place. My studies experimentally demonstrate that poor electrolyte wetting in the smallest pores may indeed limit device performance. The proposed methodology opens new avenues for systematic in-situ studies of complex structure-property relationships governing adsorption of ions under applied potential, critical for rational optimization of device performance. In addition to enhancing our understanding of ion sorption, there is a critical need to develop novel supercapacitor electrode materials with improved high-energy and high-power characteristics. The formation of carbon-transition metal oxide nanocomposites may offer unique benefits for such applications. Broadly available transition metal oxides, such as vanadium oxide, offer high ion storage capabilities due to the broad range of their oxidation states, but suffer from high resistivities. Carbon nanomaterials, such as carbon nanotubes (CNT), in contrast are not capable to store high ion content, but offer high and readily accessible surface area and high electrical conductivity. In the second research thrust of my thesis, by exploiting the ability of atomic layer deposition (ALD) to produce uniform coatings of metal oxides on CNT electrodes, I demonstrated an effective way to produce high power supercapacitor electrodes with ultra-high energy capability. The electrodes I developed showed stable performance with excellent capacitance retention at high current densities and sweep rates. Electrochemical performance of the oxide layers were found to strongly depend on the coating thickness. Decreasing the vanadium oxide coating thickness to ~10 nm resulted in some of the highest values of capacitance reported to date (~1550 F·g⁻¹VOx at 1 A·g⁻¹ current density). Similar methodology was utilized for the deposition of thin vanadium oxide coatings on other substrates, such as aluminum (Al) nanowires. In this case the VOₓ coated Al nanowire electrodes with 30-50% of the pore volume available for electrolyte access show volumetric capacitance of 1390-1950 F cc⁻¹, which exceeds the volumetric capacitance of porous carbons and many carbon-metal oxide composites by more than an order of magnitude. These results indicated the importance of electrode uniformity and precise control over conformity and thickness for the optimization of supercapacitor electrodes.

Athabasca asphaltenes were characterized using small-angle X-ray scattering (SAXS) with synchrotron radiation. Two methods were used to separate asphaltenes from Athabasca bitumen. Conventional chemical separation by precipitation with n-pentane, and physical separation realized by passing bitumen through a zirconia membrane with a 20 nm average pore size. The Athabasca permeates and chemically separated samples were dispersed in 1-methylnaphtalene and n-dodecane, with temperature and asphaltene concentration ranges of 50-310 C and 1-8 wt. %, respectively. Two approaches were also taken in the analysis of the SAXS emissions. A model-independent approach provided radii of gyration and scattering coefficients. A model-dependent fit provided size distributions for asphaltenes aggregates assuming that they are dense and spherical. Physically and chemically separated asphaltenes showed significant differences in nominal size and structure, and their structural properties exhibited different temperature dependencies. The results challenge the merits of using chemically separated asphaltene properties as a basis for asphaltene property prediction in crude oil/bitumen.

X-Linked Retinoschisis (XLRS) is a currently incurable, progressive retinal degeneration that affects approximately 1:20,000 males. Sufferers have a loss of retinal structure and visual acuity, leading to blindness. The condition is caused by mutation of the RS1 gene encoding the retinal-specific protein retinoschisin. Retinoschisin is critical in maintaining the normal, ordered retinal architecture, with deletion in mice models leading to loss of both structure and visual processing, analogous to XLRS sufferers. However, re-introduction of retinoschisin using adeno-associated viral vectors leads to complete rescue in these models. Despite the importance of retinoschisin in maintaining retinal architecture, the mechanism by which it maintains this structure remains unknown. As a result, this study aimed to structurally characterise retinoschisin and XLRS-associated point mutants R141H and H207Q to gain insight into the mechanism of retinoschisin action. To this end, retinoschisin was expressed and purified from HEK 293-EBNA cells and the structure of both monomeric and octameric retinoschisin was investigated using Small-Angle X-Ray Scattering (SAXS) and Cryo-electron microscopy (Cryo-EM). Monomeric retinoschisin was found to adopt an elongated structure that allowed for the tight association of the subunits into a planer propeller structure. However, in solution conditions the octamer also stably self-assembled into a dimer of octamers, for which the structure was solved using cryo-EM. This allowed for construction of a quasi-atomic model, enabling mapping of XLRS-associated point mutations on the complex. Two major classes of mutation were identified, in the intra-octamer and inter-octamer interfaces, suggesting a mechanism of pathology for these mutants. Observation of clustered conservative mutations at the inter-octamer interface suggested the dimer of octamers may be physiologically relevant. Furthermore, comparison of the R141H mutant to the wild-type revealed an additional mutated site in the propeller tips. Here, R141H was suggested to induce a small conformational change and alter an interaction site. Another mutant, H207Q, however, induced a destabilization of the assembled retinoschisin molecule. In conclusion, we purified and structurally characterised human retinoschisin, identifying a new hexadecameric oligomer. The structure of this allowed for identification of distinct classes of mutations on the assembled molecule and a hypothesis of the mechanism of retinoschisin action in the retina.

La décomposition de solutions solides sursaturées d'alliages multiconstitués Al-Cu- (Li, Mg) pose des défis théoriques et expérimentaux. La formation de fluctuations chimiques à température ambiante est analysée de façon critique en utilisant une combinaison de diffusion centrale (SAS), de calorimétrie différentielle à balayage (DSC), de sonde atomique tomographique (APT) et de micro-dureté. Une méthodologie pour l'interprétation combinée de données SAS d'expériences utilisant des neutrons et des rayons X est proposée et permet une comparaison avec les données de sonde atomique. Les résultats donnent la chimie et les dimensions sub-nanométriques des amas. L'effet du Mg sur les cinétiques de vieillissement naturel est discuté dans le contexte de son interaction avec les lacunes disponibles pour la diffusion. De courts traitements isothermes à températures relativement basses sont utilisés pour dissoudre les amas présents après vieillissement naturel et obtenir une solution solide avec moins de lacunes qu’après mise en solution. Lorsque du Mg est présent dans le système Al-Cu-Li, le soluté libéré après dissolution se regroupe avec une cinétique comparable à celle obtenue immédiatement après la trempe du traitement de mise en solution. L'augmentation immédiate de la cinétique de mise en amas quand une concentration quelconque de Mg est présente dans les alliages Al-Cu- (Li, Mg) est révélée avec couple de diffusion. / Decomposition of super saturated solid solutions of Al-Cu-(Li,Mg) alloys pose theoretical and experimental challenges. The chemical fluctuations - clusters - formed at room temperature are critically analysed using a combination of in-situ small angle scattering (SAS), differential scanning calorimetry (DSC), atom probe tomography (APT), and micro-hardness. A methodology for combined interpretation of SAS data from experiments using neutron and X-ray radiation is proposed and allows for comparison with standard analysis performed by APT. The results effectively capture the chemistry and sub-nanometer dimensions of clusters. The profound positive effect of Mg on clustering of Cu via excess vacancies available for diffusion is captured through the clustering kinetics over the course of natural ageing. Short isothermal treatments at relatively low temperatures are used to dissolve naturally aged clusters and obtain a solid solution with less expected vacancies. When Mg is present in the Al-Cu-Li system, released solute after dissolution exhibits clustering behaviour with kinetics comparable to those immediately after quench from solution treatment. The immediate increase of clustering kinetics when any concentration of Mg is present in Al-Cu-(Li,Mg) alloys is revealed through a composition graded sample.