Thesis (M.Sc. Agriculture (Soil Science)) -- University of Limpopo, 2022 / Soil health support crop production and answer to its sustainability and renewability. This study involved the use of under explored legumes in South Africa, Limpopo under maizelegume intercropping systems as a strategy to mitigate soil quality deterioration. The study was conducted at University of Limpopo (Syferkuil) and University of Venda (UNIVEN) Experimental farms during 2020/2021. A split plot experiment, with the main factor comprised of water regimes (irrigation and rainfed) and second main factor included cropping systems (Intercropping and monocropping). Five treatments comprised of 3 monocrops (Maize, Chickpea, and Mungbean) and 2 intercrops (maize-chickpea and maize-mungbean) replicated three times. Data collected from the soil before planting and after maturity were pH, Electrical conductivity (EC), particle size, bulk density, aggregate stability, organic matter (OM), organic carbon (OC), phosphorus (P), ammonium (NH4-N), nitrate (NO3—N), soil active carbon (SAC), and potentially mineralizable nitrogen (PMN). Plant parameters collected during vegetative and flowering stage included plant height, chlorophyll content, plant vigour, and leaf area index. All data was subjected to descriptive statistics and analysis of variance using GenStat software. Significant effect (p<0.05) was observed between treatments on soil pH (KCl), OM, organic carbon (OC), and ammonium (NH4) at Syferkuil Farm. Also, interaction between water regimes and cropping systems affected NH4 and pH (KCl). Cropping systems had significant effect (p<0.01) on pH (H2O), OM, OC, P, NH4, and NO3 at UNIVEN. Interaction between water regimes and cropping systems affected (p<0.01) pH (H2O), P but no significant effect was observed on OC, NH4, and NO3. Cropping systems and interaction at both locations did not affect particle size, bulk density, aggregate stability, EC, SAC, and PMN. Pure stands of maize and legumes had greater plant height, plant vigour, and chlorophyll content whereas intercrops had greater LAI. The results at both locations revealed that legume intercropping systems improved soil health variables without posing negative feedbacks and hence can be used to boost soil functioning. Keywords: Soil health, maize-legume intercropping, soil quality / National Research Foundation (NRF)

Current models for predicting the environmental fate of munitions constituents (MC) in soils are based mostly on chemical distribution parameters and neglect the larger considerations of other soil parameters. We are working towards a new approach based on the whole soil activity for predicting the long-term residence time and fate of MC in soils with connection to agronomic soil fertility concepts. These relationships are demonstrated by correlating experiments involving full physical and chemical characterization of eight taxonomically distinct soils, with batch reactor studies determining MC degradation potential. Soils were incubated in a slurry for 10 days in a closed reactor system with temperature, pH, and Eh readings recorded every 24 h. Air and slurry samples were taken eight times within the 168 h incubation period. Carbon dioxide, TNT, and nutrient solution concentrations were assessed to obtain a full picture of soil chemistry changes associated with microbial activity in response to additions of TNT. Multivariate analysis was used to determine the main factors impacting degradation rate. Principle Components Analysis (PCA) statistically classified the soils based on the variance of their soil property data. Partial Least Squares Analysis (PLS) showed that TNT degradation was possibly correlated with soil fertility characteristics. Although this is an exploratory study, results show promise in moving towards a more effective way of predicting TNT environmental fate in soils.

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Soil fertility is an important component of forest ecosystem, yet evaluating soil fertility remains one of the least understood aspects of forest science. Phytocentric and geocenctric approaches were used to assess soil fertility in loblolly pine plantations throughout their geographic range in the United States. The model to assess soil fertility using a phytocentric approach was constructed using the relationship between site index and aboveground productivity. Geocentric models used physical and chemical properties of the A-horizon. Soil geocentric models were constructed using two modeling approaches. In the first approach, ordinary least squares methods of multiple regression were used to derive soil fertility estimated from site index using soil physical and chemical properties from the A-horizon. Ordinary least squares methods were found unsuitable due to multicollinearity among the soil variables. In the second approach, a multivariate modeling approach, partial least squares regression, was used to mitigate multicollinearity effects. The best model to quantify soil fertility using soil physical and chemical properties included N, Ca, Mg, C, and sand percentage as the significant predictors. The 3-PG process-based model was evaluated for simulating the response of loblolly pine to changes in soil fertility. Fertility rating (FR) is a parameter in 3-PG that scales soil fertility in the range of 0 to 1. FR values estimated from phytocentric and geocentric approaches were tested against observed production. The 3-PG model prediction of aboveground productivity described 89% percent of the variation in observed aboveground productivity using FR derived from site index and 84% percent of the vari- ation in observed aboveground productivity using FR derived from physical and chemical properties of the A-horizon. A response function to model dynamics of FR (∆FR) due to one time midrotatoin fertilization of N and P was developed using the Weibull function. The magnitude of ∆FR varied with intensity of N and time since application of fertilizer. The hypothesis that repeated fertilization with N and P eliminate major nutrient deficiency in the southeastern US was tested and a relationship between baseline fertility rating and fertilizer response was developed. An inverse relationship was observed between fertilizer response and baseline FR. / Ph. D.

Thesis (MScAgric (Agronomy)--University of Stellenbosch, 2008. / A two year experiment (2004-2005) was conducted at the Tygerhoek Experimental Farm near Riviersonderend in the Western Cape Province of South Africa. The effect of different crop rotation systems on soil properties, disease and insect pests, weed populations, wheat growth, yield and quality in the wheat crop phase, included in these crop rotation systems, was determined. This trial was part of a long term crop rotation experiment started in 2002. This trial was laid out as a block design with four replications. Crop rotation systems included wheat, barley, canola, lupins and pasture phases which consisted of medics and clovers planted collectively. Soil samples were taken at each replication for N-incubations for determination of mineral N (NO3 - -N plus NH4 + -N) at 0-150 mm soil depth. A basic soil chemical analysis was done at 0-150 mm and 150-300 mm soil depths, respectively. Each sub-plot (replication) consisted of a 3 m2 block that was divided into a 1.5 m2 block for harvest and smaller 0.25 m2 blocks for samples that were taken at different growth stages throughout both seasons. Dry mass and nitrogen (N) content of different plant components, leaf area index, disease symptoms and pest damage were recorded from each sample. Trends in basic soil chemical properties mostly differed between crop rotation systems during different seasons while similar trends in soil mineral nitrogen occurred. Highest soil mineral N levels occurred after one or two consecutive years of pasture while levels after a lupin phase were disappointingly low in both seasons. These high soil mineral N levels showed similar trends to wheat grain quality and some wheat yields, while the most influencing factors on wheat grain yield were probably soil physical properties. Soil mineral N after canola was high during plant after which levels were much lower than many other crop rotation systems. This occurrence will probably need a re-evaluation of N fertilizing programs if the same trends are found in similar, but longer trials. Lolium spp. was the most prominent weed that occurred in both seasons at some crop rotation systems seemingly with no direct effect from crop rotation. Highest disease incidence mainly from Septoria spp. and Puccinia spp. occurred, particularly in wheat/wheat rotations, except for Puccinia which showed high ratings of disease symptoms in all crop rotations in the drier 2004 season. Lower ratings occurred in crop rotation systems when wheat was preceded by nonwheat crops. Insect pest damage showed no similar trends indicating no direct effect of crop rotation on these pests and/or effective control from applied pesticides in both seasons. It was concluded that climate was one of the most influencing factors affecting differences and seem to be the main cause for different trends found between these two seasons in similar crop rotation systems. A similar trial with longer duration than this one is thus needed to obtain conclusive trends. This also indicates the importance of integration of crop rotation and management practices that are most optimal during dry and wet seasons, thus limiting risk.

Thesis (MScAgric)--Stellenbosch University, 2012. / ENGLISH ABSTRACT: Biochar is a carbon-rich solid material produced during pyrolysis, which is the thermal degradation of biomass under oxygen limited conditions. Biochar can be used as a soil amendment to increase the agronomic productivity of low potential soils. The aim of this study was to investigate the effect of applying locally-produced biochar on the fertility of low-nutrient holding, sandy soil from the Western Cape, and to determine the optimum biochar application level. Furthermore, this study investigates the effect of biochar on the leaching of an inorganic nitrogen fertilizer and a multi-element fertilizer from the sandy soil. The biochar used in this study was produced from pinewood sawmill waste using slow pyrolysis (450 °C). The soil used was a leached, acidic, sandy soil from Brackenfell, Western Cape. In the first study, the sandy soil mixed with five different levels of biochar (0, 0.05, 0.5, 0.5 and 10.0 % w/w) was chemically characterised. Total carbon and nitrogen, pH, CEC and plant-available nutrients and toxins were determined. The application of biochar resulted in a significant increase in soil pH, exchangeable basic cations, phosphorus and water holding capacity. A wheat pot trial using the biochar-amended soil was carried out for 12 weeks and to maturity (reached at 22 weeks). The trial was conducted with and without the addition of a water-soluble broad spectrum fertilizer. Results showed that biochar improved wheat biomass production when added at low levels. The optimum biochar application level in the wheat pot trial was 0.5 % (approximately 10 t ha-1 to a depth of 15 cm) for the fertilized treatments (21 % biomass increase), and 2.5 % (approximately 50 t ha-1 to a depth of 15 cm) for unfertilized treatments (29 % biomass increase). Since most biochars are alkaline and have a high C:N ratio, caution should be taken when applying it on poorly buffered sandy soil or without the addition of sufficient nitrogen to prevent nutrient deficiencies. In the second study, leaching columns packed with sandy soil and biochar (0, 0.5, 2.5 and 10.0 % w/w) were set up to determine the effect of biochar on inorganic nitrogen fertilizer leaching over a period of 6 weeks. It was found that biochar (0.5, 2.5, and 10.0 % w/w) significantly reduced the leaching of ammonium (12, 50 and 86 % respectively) and nitrate (26, 42 and 95 % respectively) fertilizer from the sandy soil. Moreover, biochar (0.5 %) significantly reduced the leaching of basic cations, phosphorus and certain micronutrients. This study demonstrated the potential of biochar as an amendment of acidic, sandy soils. Our findings suggest that an application rate of 10 t ha-1 should not be exceeded when applying biochar on these soils. Furthermore, biochar application can significantly reduce nutrient leaching in sandy agricultural soils. / AFRIKAANSE OPSOMMING: Biochar is ʼn koolstof-ryke, soliede materiaal geproduseer gedurende pirolise, wat die termiese degradasie van biomassa onder suurstof-beperkte omstandighede behels. Biochar kan gebruik word as ʼn grondverbeterings middel om die agronomiese produktiwiteit van grond te verhoog. Die doel van hierdie studie was om die effek van plaaslike vervaardigde biochar op die vrugbaarheid van die sanderige grond van die Wes-Kaap te ondersoek, en om die optimale biochar toedieningsvlak te bepaal. Verder, het hierdie studie die effek van biochar op die loging van anorganiese stikstof kunsmis en ‘n multi-elementkunsmis op sanderige grond ondersoek. Die biochar wat in hierdie studie gebruik is, is van dennehout saagmeul afval vervaardig d.m.v. stadige pirolise (450 °C). Die grond wat in hierdie studie gebruik is, is ‘n geloogde, suur, sanderige grond van Brackenfell, Wes-Kaap. In die eerste studie, is ‘n chemiesie ondersoek van die sanderige grond wat vermeng met is met vyf verskillende vlakke van biochar (0, 0.05, 0.5 en 10.0 % w/w) uitgevoer. Totale koolstof en stikstof, pH, KUK, en plant-beskikbare voedingstowwe en toksiene is in die grondmengsels bepaal. Die toediening van biochar het ‘n veroorsaak dat die grond pH, uitruilbare basiese katione, fosfor en waterhouvermoë beduidend toegeneem het. ‘n Koringpotproef was uitgevoer vir 12 weke en ook tot volwassenheid (wat op 22 weke bereik was) om die effek van die biochar op die sanderige grond teen die vyf verskillende toedieningsvlakke te bepaal. Daar was behandelings met en sonder die bykomstige toediening van ‘n wateroplosbare breë-spektrumkunsmis. Resultate toon dat die toediening van biochar teen lae vlakke koringbiomassa produksie verbeter. Die optimale biochar toedieningsvlak in die koringpotproef is 0.5 % (omtrent 10 t ha-1 tot ‘n diepte van 15 cm) vir die bemeste behandeling (21 % biomassa toename), en 2.5 % (omtrent 50 t ha-1 na ‘n diepte van 15 cm) vir onbemeste behandelings (29 % biomassa toename). Aangesien die meeste biochars alkalies is en ‘n hoë C:N verhouding besit, moet sorg gedra word wanneer dit op swak-gebufferde of lae N-houdende sanderige gronde toegedien word. Die resultate het aangedui dat die biochar versigtig aangewend moet word om grond oorbekalking te voorkom. In die tweede studie, was kolomme gepak met 2.0 kg van die sanderige grond gemeng met biochar (0, 0.05, 0.5, 2.5 en 10.0 % w/w) om die effek van biochar op die loging die anorganiese stikstof kunsmis oor ‘n tydperk van 6 weke om vas te stel. Daar is gevind dat biochar (0.5, 2.5 en 10.0 % w/w) die loging van ammonium (12, 50 en 86 % onderskeidelik) en nitraat (26, 42 en 95 % onderskeidelik) op sanderige grond aansienliek verminder. Verder, het biochar (0.5 %) die loging van basiese katione, fosfor en mikrovoedingstowwe aansienlik verminder. Hierdie studie het die potensiaal van biochar as verbeteringmiddel van suur, sanderige grond gedemonstreer. Ons bevindinge dui daarop aan dat ‘n toepassing vlak van 10 t ha-1 moet nie oorskry word nie wanneer biochar op hierdie gronde toegedien word. Die toediening van biochar op sanderige grond kan die loging van voedingstowwe aansienlik verlaag.

Thesis (MScAgric)--Stellenbosch University, 2012 / ENGLISH ABSTRACT: Biochar has been labelled to be a key factor in the global carbon mitigation act and has been described as the modern day equivalent (terra nova) to the terra preta dark earth soils of the Brazilian Amazon. Globally biochar has been evaluated as a means to improve soil fertility and to mitigate greenhouse gases (GHGs). Little research has however been published on the effects of biochar incorporation on soil physical properties. The objective of this study was to evaluate the effect of pine sawmill waste derived biochar (locally-produced via slow pyrolysis – 450°C) on selected soil physical properties, soil-water dynamics and crop production and- performance, when amended to a Kroonstad (Kd 1000 – Morgendal) soil form. This soil form is commonly found in the Western Cape area (South Africa) and can be classified as having low agricultural suitability for perennial- and annual crop species. Two pot trials were carried out in an atmospheric controlled greenhouse, where winter wheat and green beans respectively were planted, with five different application levels of biochar (0t/ha, 1t/ha, 10t/ha, 50t/ha and 200t/ha). Soil physical properties namely, water-stable aggregates, bulk density and water-retention capacity along with physiochemical characterisation of the sandy soil and biochar was determined. The water-use was monitored throughout the trials (evapotranspiration, volumetric water content and biomass water use efficiency, BWUE). The above- and below ground (specific leaf traits for the green bean and the root structural development for the winter wheat) biomass was collected and analysed at harvest. There was significantly higher volumetric water content measured for the 50t/ha and 200t/ha biochar treatments. This effect can be ascribed due to a change in the soil’s tortuosity and porosity where more meso- and micro-pores were present as the biochar rate increased. The same results were evident when a water-retention curve was established in vitro by means of the sandbox method. The bulk densities were only significantly lower for the 200t/ha biochar treatments. The wheat root systems differed greatly among the fertilised biochar treatments: the 50t/ha and 200t/ha treatments had a more complex fibrous root system (more extensive branching and thinner roots) than 0t/ha, 1t/ha and 10t/ha application levels. This is attributed to the increased water-holding capacity along with a reduction of N- and P availability with increasing addition of biochar. Several leaf traits were measured for the green bean crops; however the leaf nitrogen- and carbon content, chlorophyll content index (CCI) and carbon isotope fractionation yielded the most interesting findings. Concerning the fertilised biochar treatments, there was established that the 10t/ha treatments had the highest leaf nitrogen- and carbon content. The leaf chlorophyll content did not differ significantly between the fertilised biochar treatments; however a very interesting observation was evident regarding the measured leaf CCI for the unfertilised treatments. A decreasing trend and lower leaf CCI was measured as the biochar application levels increased. This effect was ascribed to be due to a decrease in N uptake by the plants as the biochar application increased, the C/N ratio also increased, and this leading to N immobilisation. The lowest leaf carbon isotope fractionation was measured for the 10t/ha fertilised treatments and is inversely correlated with BWUE and therefore endorses the conclusion that the 10t/ha biochar application had a positive effect on the long term water use efficiency for the green bean plants. Biochar promoted aggregation in the sand-rhizosphere interface for winter wheat, increased water-holding capacity and enhanced crop performance for green beans. The findings reported here provide new information on the effect of biochar on the structural development of sandy soil, combined with biochar- and root growth effects for winter wheat; along with detailed interpretations of specific leaf traits associated with crop production for commercial green beans. The addition of biochar at low application levels (approximately 1-10t/ha to 15 cm depth) increased the biomass yield and water use efficiency of the crop species. Besides long term carbon storage, biochar can have immediate positive effects on the physical properties of sand and plant growth. / AFRIKAANSE OPSOMMING: Biokoolstof word beskou as ‘n sleutel komponent rakende die wet op globale koolstofvermindering en is al beskryf as die moderne ekwivalent (terra nova) van die terra preta donker-aardgronde wat aangetref word in die Brasiliaanse Amasone. Wêreldwyd word biokoolstof tans geëvalueer met die doel om grondvrugbaarheid te verbeter asook kweekhuisgasse (KHG) se nadelige gevolge te verlig. Min navorsing was tot dus ver gedoen rakende die uitwerking met toediening van biokoolstof op grondfisiese-eienskappe. Die doel van hierdie studie was om die effek van biokoolstof, wat afkomstig is van denne-saagmeul-afval (plaaslik geproduseer is en d.m.v. stadige perolise - 450°C) te evalueer aangaande die volgende faktore: geselekteerde grondfisiese-eienskappe, grond-waterdinamika interaksie en die uitwerking op gewasproduksie; met toediening aan 'n Kroonstad (Kd 1000 - Morgendal) grondvorm. Hierdie grondvorm word as algemeen in die Wes-Kaap (Suid-Afrika) bestempel en kan geklassifiseer word as ‘n lae-geskiktheid landbougrond vir meerjarige- en eenjarige gewasse. Twee potproewe is uitgevoer onder beheerde atmosfeer in ‘n kweekhuis, waar winter koring en groenbone geplant is, met vyf verskillende behandelings van biokoolstof (0t/ha, 1t/ha, 10t/ha, 50t/ha en 200t/ha). Die volgende grondfisiese-eienskappe is ondersoek, naamlik water-stabiele aggregaat formasie, bulkdigtheid en waterhouvermoë, asook die fisiochemiese karakterisering van die sanderige grond en biokoolstof wat gebuik is. Waterverbruik is gedurende die proewe gekontroleer (evapotranspirasie, volumetriese waterinhoud en die biomassa se water verbruiksdoeltreffendheid, BWVD). Die bo- en ondergrondse biomassa, spesifiek die blaareienskappe van die groenboontjie en die strukturele ontwikkeling van die winter koring se wortels, is tydens die oes ondersoek en ontleed. Die volumetriese waterinhoud was betekenisvol, asook hoër vir die 50t/ha en 200t/ha behandelings. Hierdie effek word toegeskryf as gevolg van 'n verandering in die grond se kronkeligheid en porositeit; waar meer meso- en mikroporieë teenwoordig was soos die biokoolstof inhoud toegeneem het. Dieselfde resultate was verkry met die opstelling van ‘n water-retensie kurwe in vitro d.m.v. die Sandboks metode. Bulkdigtheid was slegs betekenisvol verskilled asook aansienlik laer vir die 200t/ha biokoolstof behandelings. Die koring se wortelstelsel het drasties verskil tussen die verskillende bemeste biokoolstof behandelings: die 50t/ha en 200t/ha behandelings het 'n meer komplekse en veselagtige wortelstelsel gevorm (hoër graad van vertakking en dunner wortels was aanwesig) as die 0t/ha, 1t/ha en 10t/ha behandelings. Die effek word toegeskryf aan die toenemende waterhouvermoë, tesame met 'n tekort aan N- en P-beskikbaarheid soos die biokoolstof toedieningshoeveelhede verhoog het. Verskeie blaareienskappe is gemeet vir die groenboon gewasse, maar die blaar stikstof- en koolstof-inhoud, chlorofil inhoud indeks (CII) en koolstof-isotoop fraksionering het die mees interessante bevindinge opgelewer. Die hoogste blaar stikstof-en koolstof-inhoud is gemeet vir die 10t/ha bemeste biokoolstof behandelings. Die blaar chlorofil inhoud het nie beduidend verskil tussen die bemeste biokoolstof behandelings nie, maar daar was egter 'n baie interessante waarneming vir die onbemeste biokoolstof behandelings. ‘n Tendens was aanwesig waar die CII afgeneem het soos die biokoolstof toedieningshoeveelheid ook afgeneem het vir die onbemeste behandelings. Die effek word toegeskryf as gevolg van 'n afname in N-opname deur die plant soos die biokoolstof toedieningshoeveelheid verhoog is en tot gevolg gehad het dat die C/N-verhouding ook toegeneem het, wat gelei het tot N-immobilisasie. Die laagste blaar koolstof-isotoop fraksionering was geassioseer met die 10t/ha bemeste biokoolstof behandelings en is omgekeerd gekorreleerd met BWVD en onderskryf dus die gevolgtrekking dat die 10t/ha biokoolstof behandeling 'n positiewe uitwerking het op die langtermyn waterverbruiksdoeltreffendheid vir groenboontjie plante. Biokoolstof het aggregasie bevorder binne die wortelsone, asook deurgans die waterhouvermoë verhoog en gewasproduksie verbeter. Hierdie bevindinge lewer nuwe inligting oor die effek van biokoolstof op die strukturele ontwikkeling van sanderige grond en die gekombineerde interaksie met biokoolstof toediening en hoe dit wortegroei beïnvloed van winter koring; asook 'n gedetailleerde interpretasie van spesifieke blaareienskappe wat verband hou met die produksie van gewasse vir kommersiële verbouing soos die groenboontjie. Die toediening van biokoolstof by die lae hoeveelhede (ongeveer 1-10t/ha tot op 15 cm diepte) het die opbrengs en waterverbruiksdoeltreffendheid van die gewasse verbeter. Behalwe vir die langtermyn koolstofvaslegging, kan biokoolstof toediening onmiddellike positiewe resultate teweeg bring aangaande die fisiese eienskappe van sandgronde en plantegroei.