Halogen bonding to phosphorus atoms remains uncommon, with relatively few examples reported in the literature. In part 1 of the thesis, the preparation and investigation of the cocrystal (dicyclohexylphenylphosphine)(1,6-diiodoperfluorohexane) by X-ray crystallography and solid-state multinuclear magnetic resonance spectroscopy is described. The crystal structure features two crystallographically unique C-I···P halogen bonds (dI···P = 3.090(5) Å, 3.264(5) Å) and crystallographic disorder of one of the 1,6-diiodoperfluorohexane molecules. The first of these is the shortest and most linear I···P halogen bond reported to date. 13C, 19F, and 31P magic-angle spinning solid-state NMR spectra are reported. A 31P chemical shift change of -7.0 ppm in the cocrystal relative to pure dicyclohexylphenylphosphine, consistent with halogen bond formation, is noted. This work establishes iodoperfluoroalkanes as viable halogen bond donors when paired with phosphorus acceptors, and also shows that dicyclohexylphenylphosphine can act as a practical halogen bond acceptor. In part 2 of the thesis, computational work was done on nuclides of atoms which engage in the strongest halogen bonds (iodine, bromine, chlorine) that are all quadrupolar (spin I > ½). Previous group work reported extensive experimental NMR and NQR data relating 35/37Cl, 79/81Br, and 127I quadrupolar coupling information to local molecular structure in halogen bonded systems. Here, we make use of a new parameter, the valence p-orbital population anisotropy (VPPA), reported by Rinald and Wu, to increase our understanding of the origins of the electric field gradients (EFG) in halogen-bonded systems. Computations on model and real halogen-bonded cocrystalline systems using standard hybrid DFT methods are used to generate p-orbital populations and to compute the VPPA. We discuss the utility of the VPPA, and hence the EFG, as a tool to assess the ability of particular donors to engage in halogen bonds.

Amyloid β (Aβ) is a peptide known to form amyloid fibrils in the brain of patients suffering from Alzheimer’s disease. A complete mechanistic understanding how Aβ peptides form neurotoxic assemblies and how they kill neurons has not yet been achieved. Previous analysis of various Aβ40 mutants could reveal the significant importance of the hydrophobic contact between the residues Phe19 and Leu34 for cell toxicity. For some mutations at Phe19, toxicity was completely abolished. In the current study, we assessed if perturbations introduced by mutations in the direct proximity of the Phe19/Leu34 contact would have similar relevance for the fibrillation kinetics, structure, dynamics and toxicity of the Aβ assemblies. To this end, we rationally modified positions Phe20 or Gly33. A small library of Aβ40 peptides with Phe20 mutated to Lys, Tyr or the non-proteinogenic cyclohexylalanine (Cha) or Gly33 mutated to Ala was synthesized. We used electron microscopy, circular dichroism, X-ray diffraction, solid-state NMR spectroscopy, ThT fluorescence and MTT cell toxicity assays to comprehensively investigate the physicochemical properties of the Aβ fibrils formed by the modified peptides as well as toxicity to a neuronal cell line. Single mutations of either Phe20 or Gly33 led to relatively drastic alterations in the Aβ fibrillation kinetics but left the global, as well as the local structure, of the fibrils largely unchanged. Furthermore, the introduced perturbations caused a severe decrease or loss of cell toxicity compared to wildtype Aβ40. We suggest that perturbations at position Phe20 and Gly33 affect the fibrillation pathway of Aβ40 and, thereby, influence the especially toxic oligomeric species manifesting so that the region around the Phe19/Leu34 hydrophobic contact provides a promising site for the design of small molecules interfering with the Aβ fibrillation pathway.

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<p>Lithium-ion batteries provide a more cost-effective and non-toxic source of reusable energy compare to other energy sources. Several research studies have lead to production of some more promising cathode components for lithium ion batteries. Recently, a new series of pyrophosphate-based composition Li₂FeP₂O₇ and Li₂MnP₂O₇ has been reported as cathode materials. They have shown a 3D framework structure and the two Lithium-ions in the three-dimensional tunnel structure make it possible that more than one lithium ion be extracted during cycling. Lithium solid state nuclear magnetic resonance (NMR) is an effective technique to study this cathode material, not only for analyzing local structure, but also for investigation of the microscopic processes that take place in the battery.</p> <p>In this work, Li₂FeP₂O₇ and Li₂MnP₂O₇ have been synthesized. The lithium environment of these materials is studied using 1D ^6,7Li NMR. Assignment of Li₂MnP₂O₇ spectrum has been made based on Fermi-contact interaction and crystal structure. Both variable temperature experiment and 1D selective inversion NMR are used to establish Li-ion pathways as well as Li hopping rates for Li₂MnP₂O₇. Also, ⁷Li MAS NMR measurements are used to characterize Li environments in LixFeP₂O₇after being electrochemically cycled to different points, and preliminary results regard to changes to ion mobility in LixFeP₂O₇at different electrochemical cycled points are presents here, solid-solution (de)lithetiation process is confirmed for this material.</p> / Master of Science (MSc)

This thesis focuses on the state-of-the-art spectroscopic approaches in studying polymer electrolytes for proton exchange membrane fuel cells. With the aim to optimize architectural and chemical design of hydrogen fuel cells, a variety of perfluorosulfonic acid (PFSA) membranes were explored to establish characteristics that ultimately improve PFSA electrolyte performance. The results of the detailed spectroscopic analyses helped to unveil a structure performance relationship. Solid-state nuclear magnetic resonance (ssNMR) spectroscopy was used to distinguish F and C environments, while scanning transmission X-ray microscopy coupled with X-ray absorption spectroscopy provided complementary chemical structural information with direct access to S and O environments. The combination of these two techniques provided advantages in identifying subtle chemical alterations in PFSAs. Furthermore, a novel ssNMR technique was developed with the purpose of probing local dynamics from the polymer perspective. This ¬¬19F dipolar recoupling ssNMR approach was validated and applied to PFSA membranes by monitoring the normalized double quantum build-up curves as a function of relative humidity (%RH) and temperature, and the polymer side chain showed higher local motion as response to temperature and %RH elevation compared to the backbone. The effective dipolar coupling constant was extracted to represent local dynamics and compared amongst tested PFSAs. A standardized metric, the dynamic order parameter, was also introduced and applied to the materials to quantitatively compare them within the same class. This new method provided an alternative way to extract site-specific local dynamics profile for materials with multiple resonances. Additionally, the combination of in situ fuel cell performance evaluation and ex situ ssNMR characterization created a connection between fundamental chemistry and bulk electrochemical measurements. As the first study to correlate these physicochemical properties to material performances, this work parameterized the structural impact at a molecular level and provided insight into improving polymer electrolyte materials. / Thesis / Doctor of Philosophy (PhD) / Proton exchange membrane fuel cells, which help to reduce the reliance on fossil fuels by locally producing only water and heat, have received a significant amount of research attention as an alternative power generator for vehicular and stand-alone energy applications. Perfluorosulfonic acid (PFSA) membranes, the most common commercial polymer electrolyte materials, have been investigated using modern analytical spectroscopies. Solid-state nuclear magnetic resonance (ssNMR) spectroscopy and synchrotron-based scanning transmission X-ray microscopy were used in elucidating material compositions with complementary information. Moreover, an advanced ssNMR method was developed and applied to a variety of PFSAs. Polymer backbones and side chains were separated spectroscopically, and were distinguished based on different local dynamics profiles extracted from the ssNMR experiments. Additionally, bulk material performance evaluations from electrochemical analyses were correlated to PFSA side chain local dynamics profiles. The integrated spectroscopic study illustrated in this thesis provided insight into understanding the structure-performance relationship of PFSA electrolytes.