En Imagerie par Résonance Magnétique (IRM), l’augmentation du champ magnétique statique permet en théorie de fournir un rapport signal sur bruit accru, améliorant la qualité des images. L’objectif de l’IRM à ultra haut champ est d’atteindre une résolution spatiale suffisamment haute pour pouvoir distinguer des structures si fines qu’elles sont actuellement impossibles à visualiser de façon non-invasive. Cependant, à de telles valeurs de champs magnétiques, la longueur d’onde du rayonnement électromagnétique envoyé pour basculer les spins des protons de l’eau est du même ordre de grandeur que l’objet dont on souhaite faire l’image. Des phénomènes d’interférences sont observés, ce qui se traduit par l’inhomogénéité de ce champ radiofréquence (RF) au sein de l’objet. Ces interférences engendrent des artefacts de signal et/ou de contraste dans les images IRM, et rendent ainsi leur exploitation délicate. Il est donc crucial de fournir des solutions pour atténuer la non-uniformité de l’excitation des spins, à défaut de quoi de tels systèmes ne pourront atteindre leurs pleins potentiels. Pour obtenir des diagnostics pertinents à très haut champ, il est donc nécessaire de créer des impulsions RF homogénéisant l'excitation de l'ensemble des spins (ici du cerveau humain), optimisées pour chaque individu. Pour cela, un système de transmission parallèle (pTX) à 8 canaux a été installé au sein de notre imageur à 7 Tesla. Alors que la plupart des systèmes IRM cliniques n’utilisent qu’un seul canal d’émission, l’extension pTX permet de jouer différentes formes d’impulsions RF de concert. La somme résultante de ces interférences doit alors être optimisée pour atténuer la non-uniformité observée classiquement. L’objectif de cette thèse est donc de synthétiser ce type d’impulsions, en utilisant la pTX. Ces impulsions auront pour contrainte supplémentaire le respect des limitations internationales concernant l'exposition à des champs radiofréquence, qui induit une hausse de température dans les tissus. En ce sens, de nombreuses simulations électromagnétiques et de températures ont été réalisées en introduction de cette thèse, afin d’évaluer la relation entre les seuils recommandés d’exposition RF et l’élévation de température prédite dans les tissus. Cette thèse porte plus spécifiquement sur la conception de l’ensemble des impulsions RF refocalisantes utilisées dans des séquences IRM non-sélectives, basées sur l’écho de spin. Dans un premier temps, seule une impulsion RF a été générée, pour une application simple : l’inversion du déphasage des spins dans le plan transverse. Dans un deuxième temps, sont considérées les séquences à long train d’échos de refocalisation appliquées à l’in vivo. Ici, l’opérateur mathématique agissant sur la magnétisation, et non pas son état final comme il est fait classiquement, est optimisé. Le gain en imagerie à très haut champ est clairement visible puisque les opérations mathématiques (la rotation des spins) voulues sont réalisées avec plus de fidélité que dans le cadre des méthodes de l’état de l’art. Pour cela, la génération de ces impulsions RF combine une méthode d’excitation des spins avec navigation dans l’espace de Fourier, les kT-points, et un algorithme d’optimisation, appelé Gradient Ascent Pulse Engineering (GRAPE), utilisant le contrôle optimal. Cette conception est rapide grâce à des calculs analytiques plus directs que des méthodes de différences finies. La prise en compte d’un grand nombre de paramètres nécessite l’usage de GPUs (Graphics Processing Units) pour atteindre des temps de calcul compatibles avec un examen clinique. Cette méthode de conception d’impulsions RF a été validée expérimentalement sur l’imageur 7 Tesla de NeuroSpin, sur une cohorte de volontaires sains. / In Magnetic Resonance Imaging (MRI), the increase of the static magnetic field strength is used to provide in theory a higher signal-to-noise ratio, thereby improving the overall image quality. The purpose of ultra-high-field MRI is to achieve a spatial image resolution sufficiently high to be able to distinguish structures so fine that they are currently impossible to view in a non-invasive manner. However, at such static magnetic fields strengths, the wavelength of the electromagnetic waves sent to flip the water proton spins is of the same order of magnitude than the scanned object. Interference wave phenomena are then observed, which are caused by the radiofrequency (RF) field inhomogeneity within the object. These generate signal and/or contrast artifacts in MR images, making their exploitation difficult, if not impossible, in certain areas of the body. It is therefore crucial to provide solutions to mitigate the non-uniformity of the spins excitation. Failing this, these imaging systems with very high fields will not reach their full potential.For relevant high field clinical diagnosis, it is therefore necessary to create RF pulses homogenizing the excitation of all spins (here of the human brain), and optimized for each individual to be imaged. For this, an 8-channel parallel transmission system (pTX) was installed in our 7 Tesla scanner. While most clinical MRI systems only use a single transmission channel, the pTX extension allows to simultaneously playing various forms of RF pulses on all channels. The resulting sum of the interference must be optimized in order to reduce the non-uniformity typically seen.The objective of this thesis is to synthesize this type of tailored RF pulses, using parallel transmission. These pulses will have as an additional constraint the compliance with the international exposure limits for radiofrequency exposure, which induces a temperature rise in the tissue. In this sense, many electromagnetic and temperature simulations were carried out as an introduction of this thesis, in order to assess the relationship between the recommended RF exposure limits and the temperature rise actually predicted in tissues.This thesis focuses specifically on the design of all RF refocusing pulses used in non-selective MRI sequences based on the spin-echo. Initially, only one RF pulse was generated for a simple application: the reversal of spin dephasing in the transverse plane, as part of a classic spin echo sequence. In a second time, sequences with very long refocusing echo train applied to in vivo imaging are considered. In all cases, the mathematical operator acting on the magnetization, and not its final state as is done conventionally, is optimized. The gain in high field imaging is clearly visible, as the necessary mathematical operations (that is to say, the rotation of the spins) are performed with a much greater fidelity than with the methods of the state of the art. For this, the generation of RF pulses is combining a k-space-based spin excitation method, the kT-points, and an optimization algorithm, called Gradient Ascent Pulse Engineering (GRAPE), using optimal control.This design is relatively fast thanks to analytical calculations rather than finite difference methods. The inclusion of a large number of parameters requires the use of GPUs (Graphics Processing Units) to achieve computation times compatible with clinical examinations. This method of designing RF pulses has been experimentally validated successfully on the NeuroSpin 7 Tesla scanner, with a cohort of healthy volunteers. An imaging protocol was developed to assess the image quality improvement using these RF pulses compared to typically used non-optimized RF pulses. All methodological developments made during this thesis have contributed to improve the performance of ultra-high-field MRI in NeuroSpin, while increasing the number of MRI sequences compatible with parallel transmission.

This thesis is concerned with problems of measuring and mapping of magnetic field in MR tomograph, for purpose of magnetic flux density homogeneity optimization. Attention is paid to mapping techniques on rotary symmetric volume and to ways of magnetic fields optimization with utilization of passive and active correction systems. Theoretical analysis of magnetic field decomposition with utilization of spherical harmonics and numerical decomposition is made. Mapping and approximation techniques of basic magnetic field are verified by experiments in the laboratory at the Institute of Scientific Instruments AS CR in Brno.

This doctoral thesis proposes a new algorithm for the reconstruction of impedance images in monitored objects. The algorithm eliminates the spatial resolution problems present in existing reconstruction methods, and, with respect to the monitored objects, it exploits both the partial knowledge of configuration and the material composition. The discussed novel method is designed to recognize certain significant fields of interest, such as material defects or blood clots and tumors in biological images. The actual reconstruction process comprises two phases; while the former stage is focused on industry-related images, with the aim to detect defects in conductive materials, the latter one concentrates on biomedical applications. The thesis also presents a description of the numerical model used to test the algorithm. The testing procedure was centred on the resulting impedivity value, influence of the regularization parameter, initial value of the numerical model impedivity, and effect exerted by noise on the voltage electrodes upon the overall reconstruction results. Another issue analyzed herein is the possibility of reconstructing impedance images from components of the magnetic flux density measured outside the investigated object. The given magnetic field is generated by a current passing through the object. The created algorithm for the reconstruction of impedance images is modeled on the proposed algorithm for EIT-based reconstruction of impedance images from voltage. The algoritm was tested for stability, influence of the regularization parameter, and initial conductivity. From the general perspective, the thesis describes the methodology for both magnetic field measurement via NMR and processing of the obtained data.

This thesis deals with the cartilage imaging using magnetic resonance. At first, there is mentioned physical principle of the magnetic resonance phenomenon and the most commonly used excitation sequences, followed by the description of the 9.4 T MR imaging system Bruker BioSpec 94/30 USR, which was used for measurement in the practical part. The next part is dedicated to the composition of cartilages and describes the temporomandibular joint, due to its suitability as an object for cartilage imaging. The series of MR scans of temporomandibular joint were taken with different acquisition parameters and evaluated by program designed through the MATLAB software. The program can be used for viewing scanned images, evaluating their contrast and determining the T1 relaxation time of the tissues by creating T1 maps.

This thesis describes the theory for static and dynamic magnetic-resonance imaging using contrast agents affecting T1 relaxation time. The available acquisition methods in the specified facility of Masaryk Oncological Institute in Brno are described. The sequences for subsequent experimental measurements are selected. The used phantoms are described. Acquisition protocol for measuring is described briefly and the evaluation method for the measured data is suggested. The best acquisition sequence and a method of measurements is chosen influenced by estimation of relaxation time T1, sensitivity and signal to noise ratio. Perfusion analysis is executed and perfusion parameters are calculated. The work was supported by the European Regional Development Fund and the State Budget of the Czech Republic (RECAMO, CZ.1.05/2.1.00/03.0101).