River-floodplain connectivity is defined as the water mediated transfer of materials and energy between a river or stream and its adjacent floodplain. It is generally accepted that restoring and/or enhancing river-floodplain connectivity can reduce the downstream flux of reactive solutes such as nitrogen (N) and phosphorus (P) and thus improve downstream water quality. However, there is little scientific literature to guide ecological engineering efforts which optimize river-floodplain connectivity for solute retention. Therefore, the aim of my dissertation research was to examine feedbacks between inundation hydrology and floodplain biogeochemistry, with an emphasis on analyzing variation experienced along the river continuum and the cumulative effects of river-floodplain connectivity at the basin scale. This was completed through four independent investigations. Field sites ranged from the Atchafalaya River Basin, the largest river-floodplain system in the continental US, to the floodplain of a recently restored headwater stream in Appalachia. We also developed a method to examine river-floodplain connectivity across large- river networks and applied that methodology to US stream network. Largely, our results highlight the role floodwater residence time distributions play in floodplain biogeochemistry. In headwater streams, residence times restrict redox dependent processes (e.g. denitrification) and downstream flushing of reactive solutes is the dominant process. However, in large-river floodplains, redox dependent processes can become solute limited because of prolonged residence times and hydrologic isolation. In these floodplains, the dominant process is often autochthonous solute accumulation. Further, results from our modeling study suggest large-river floodplains have a greater impact on downstream water quality than floodplains associated with smaller streams, even when considering cumulative effects across the entire river network. / Ph. D.

Extreme flooding and excess nutrient pollution have been detrimental to river health under increased environmental stress from human activities (e.g., agriculture, urbanization). Riverine flooding can be detrimental to human life and infrastructure yet provides important habitat and ecosystem services. Traditional flood control approaches (e.g., levees, dams) negatively impact habitat and ecosystem services, and cause flooding elsewhere along the river. Prior studies have shown that stream restoration can enhance flood attenuation, and increased exchange of water between the channel and floodplain can improve water quality. However, the effects of floodplain restoration during small and sub annual recurrence interval storms have not been thoroughly studied, nor have cumulative impacts of floodplain restoration on water quality at watershed scales. We used HEC-RAS to perform 1D unsteady simulations on a 2nd-order generic stream from the Chesapeake Bay Watershed to study flood attenuation under small and sub-annual recurrence interval storms (i.e., 2-year, 1-year, 0.5-year, and monthly). In HEC-RAS we varied percent of channel restored, location of restoration, bank height of restoration, floodplain width, and floodplain Manning's n. Overall, stream restoration reduced peak flow (up to 37%) and decreased time to peak (up to 93%). We found the timing of tributary inflows could obscure the attenuation achieved, and even reverse the trends with certain parameters in the sensitivity analysis. The greatest exchange with the floodplains (greater volume and exchange under more recurrence interval storms) was observed from Stage 0 restoration, which reduces bank height more than other approaches. We also conducted a quantitative literature synthesis of nitrate removal rates from stream restoration projects. We focused on how removal rates varied with properties relevant at watershed scales, such as effects of stream order. The resulting database will aid in determining which stream restoration parameters better reduce nutrient loads and in simulating the effects of stream restoration on water quality at watershed scales. Floodplain restoration practices, and particularly Stage 0 approaches, enhance flood attenuation which can help to counteract urban hydrologic effects. / Master of Science / Extreme flooding and excess nutrient pollution have been detrimental to river health under increased environmental stress from human activities (e.g., agriculture, urbanization). Riverine flooding can be detrimental to human life and infrastructure yet provides important habitat and ecosystem services. Traditional flood control approaches (e.g., levees, dams) negatively impact habitat and ecosystem services, and cause flooding elsewhere along the river. Prior studies have shown that stream restoration can enhance flood attenuation and aid in removal of excess nutrients. Previous studies have shown that stream restoration helps to transport nutrients to highly reactive soils and increases time for reactions. However, the effects of floodplain restoration during small and sub annual recurrence interval storms have not been thoroughly studied, nor have cumulative impacts of floodplain restoration on water quality at watershed scales. To fill these knowledge gaps, increased understanding of stream restoration design parameters and watershed level characteristics (e.g., tributary inflows, nutrient loads, etc.) is necessary. We used HEC-RAS to study flood attenuation via stream restoration under small and sub-annual recurrence interval storms on a generic stream from the Chesapeake Bay Watershed. In HEC-RAS we varied percent of channel restored, location of restoration, bank height of restoration, floodplain width, and floodplain Manning's n (surface roughness). Overall, stream restoration did reduce peak flow and decrease time to peak, which means that restoration can diminish negative flooding effects. The greatest exchange with the floodplains was observed under Stage 0 restoration, which reduces bank height more than other approaches. We also conducted a quantitative literature synthesis to collect nitrate removal rates from stream restoration projects. We focused on how removal rates varied with properties relevant at watershed scales, such as effects of stream order. The resulting database will aid in determining which stream restoration parameters better reduce nutrient loads and in simulating the effects of stream restoration on water quality at watershed scales. These efforts will help to inform practitioners how to construct stream restoration projects that are more efficient for flood control and nutrient reduction. Floodplain restoration practices, particularly Stage 0 approaches, enhance flood attenuation and exchange which can help to counteract urban hydrologic effects.

In 2000 the European Union introduced the Water Framework Directive, new legislation that regulates the use of surface waters within the European Community. The goal of this legislation is to protect, enhance and restore all surface waters within the Community to Good Surface Water Status. Good-Status is described as having low levels of anthropogenic distortion in its hydro-morphological and physiochemical components as well as possessing biota that would normally be associated with the type-specific aquatic ecosystem. The assessment of ecosystem status is to be defined by comparisons with intact representative reference sites, by using modelling techniques that define reference conditions, a combination of the two, or expert judgement. As undisturbed aquatic ecosystems are rare or non-existent in Europe the base-line data will have to be defined using the latter methodologies. The aim of this project is to help define reference conditions for lotic systems in Europe based on the physical instream habitat parameters of a resident species. Brown trout (Salmo trutta), a ubiquitous and well studies species endemic to Europe, was used as the target organism to develop the assessment protocol. The project focused on the requirements this species has of aspects of its physical habitat; specifically, its usage of depth, velocity, and substrate. An extensive survey of the scientific literature was used to define the requirements trout has for the three physical parameters at four life stages. These are the spawning, nursery, juvenile and adult-resident life stages. These requirements were expressed as tolerance profiles, which defined suitable, usable and not-suitable habitat. The methodology was demonstrated by evaluating the physical habitat available at six reaches in three small streams, March, Burnhouse and Bin Burns, which drain into the Carron Valley Reservoir in central Scotland. From the perspective of water depth, these streams seem best suited as nursery areas, are less well suited as juvenile habitat, and do not appear to be well matched for adult residents. The assessment of both velocity and substrate indicated that the portion of the study reaches available for use by resident brown trout increased with trout size. The assessment of all three physical habitat parameters at all study reaches found variable portions of the streams suitable for use by spawning trout. When the habitat variables are integrated all stream segments streams seem best suited as nursery and spawning areas. To a lesser extent juvenile trout can use these burns and very little habitat is available for use by adult resident trout. The tolerance profiles that were created in this study are standardized assessment criteria that when compared with stream survey data can produce an appraisal of habitat availability in any fluvial freshwater system that supports populations of brown trout (Salmo trutta). The assessment method can be combined to produce an integrated habitat assessment, using both an index and by the calculation of Froude number, which is a more realistic approach than the assessment of individual habitat parameters as salmonids choose their microhabitat based on multiple factors. This approach allows an investigator to determine the amount and relative portion of useable habitat and to determine the quality of that habitat. Finally, by examining the physical habitat variable that most strongly correlates with the final integrated habitat distribution the individual habitat parameter that is most important to the distribution of physical habitat at a site can be determined. While this technique would certainly benefit from further development it does show potential to aid in physical habitat assessment of trout streams.

This study investigates the relationship between channel complexity and nutrient spiraling along 31 reaches of an urbanized watershed in Portland, Oregon. Much research shows that urbanization has an effect on watershed hydrology and nutrient loading at the watershed scale for various sized catchments. However, the flux of nutrients over short reaches within a stream channel has been less studied because of the effort and costs associated with fieldwork and subsequent laboratory analysis of the surface water samples. In this study I measure channel complexity and uptake velocity of nitrate to determine if this relationship is indicative of a healthy, functioning stream. I take field measurements and samples to determine the complexity and uptake velocity of each reach. Using ion-selective electrodes, the fluxes of nitrate were measured within each reach; when combined with channel geometry and velocity measurements these measurements allow for the transformation of nitrate fluxes into spiraling metrics. Results show that 18 of the 31 reaches had uptake velocity. Discharge and sinuosity were positively correlated with nitrate uptake velocity. Complexity and nitrate concentration were negatively correlated with nitrate uptake velocity. Grass landcover was positively correlated with nitrate uptake velocity and negatively correlated with nitrate concentration. These results indicate that land use and channel complexity both are related to the in-stream processing of nitrate. The implication of this study is that channel complexity is an important driver of nutrient flux in an urban watershed, and that this technique can be applied in future studies to better characterize water quality of stream channels over short reaches to entire catchments.

This dissertation examined the extent to which interests and values of diverse stakeholders were considered through participation-oriented decision-making. It covered the An' Yang Stream restoration case in South Korea, which has been judged a successful stream management endeavor led by public-private partnership governance. This research utilized a mixed methods approach, combining qualitative and quantitative methods. It addressed the extent to which the collaborative and participatory decision-making processes incorporated diverse stakeholder values and visions. The relevant data on stream restoration was collected through nominal group technique (NGT), analytic hierarchy process (AHP), semi-structured interviews, observations at collaborative stakeholder meetings and workshops, and documentation review. My research concluded that integration of all interests was not achieved. These interests might have potentially affected the extent to which stakeholders' values are incorporated or not in participation-oriented collaborative stakeholders' partnerships by utilizing interest-based facilitation techniques, such as joint-fact-finding or principled negotiation. At the same time, my findings expatiate the catalyzing roles of the public media within stream restoration decision-making governance.

Killbuck-Mud Creek Subwatershed (KBMC) stream channels have been extensively modified to facilitate the drainage for agricultural purposes. To identify the feasibility of stream restoration, the natural conditions of the subwatershed were estimated from the current basin morphometry, hydrology, and channel sediment load. The historic conditions for KBMC were assembled from literature and remote sensing to tabulate the conditions controlling the drainages through time. Using the Rosgen Classification of Natural Rivers the morphology of the natural streams was predicted.The dredged channels of KBMC follow glacial outwash channels. The glacial channels were silted in and hardwood forests added woody debris to create slow moving swampy conditions in the drainages. These conditions did not allow for agriculture prior to stream modifications. Only the installation of channel conditions not previously found in KBMC can be used as a stream restoration option, other management practices are suggested for the subwatershed. / Department of Geology

The Stephens Creek Watershed in southwest Portland, Oregon was chosen by the city as a pilot project for urban stream restoration efforts, and the infiltration of stormwater was identified as a potential restoration strategy. The Stephens Creek Watershed has historically been known to be unstable during high precipitation events (Burns, 1996), and the need to address the response of slope stability to anthropogenically-driven changing groundwater conditions is the focus of this study. Airborne light detection and ranging (LiDAR) and geotechnical data from the City of Portland were employed to create a high resolution (0.84 m2) physics-based probabilistic slope stability model for this watershed, using the map-based probabilistic infinite slope analysis program PISA-m (Haneberg, 2007). Best and worst case models were run using fully dry and fully saturated soil conditions, respectively. Model results indicate that 96.3% of the watershed area had a probability [less than or equal to] 0.25 that the slope factor of safety (FOS) was [less than or equal to] 1 for fully dry conditions, compared to 76.4% for fully saturated conditions. Areas that had a probability [greater than or equal to] 0.25 that the slope factor of safety (FOS) was [less than or equal to] 1 were found to occur mainly along cut/fill slopes as well as within the deeply incised canyons of Stephens Creek and its tributaries. An infiltration avoidance map was derived to define areas that appear to be unsuitable for infiltration. Based on these results, it is recommended that stormwater continues to be directed to existing sewer infrastructure and that the "storm water disconnect" restoration approach not be used by the city.

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