Various anomalous effects that emerge when the interfaces between media are involved in sound-matter or light-matter interactions are studied. The three specific systems examined are a fluid channel between elastic metal plates, a linear chain of metallic perforated cylindrical shells in air, and a metal-dielectric slab with the interfaces treated as finite regions of smoothly changing material properties. The scattering of acoustic signals on the first two is predicted to be accompanied by the effects of redirection and splitting of sound. In the third system, which supports the propagation of surface plasmons, it is discovered that the transition region introduces a nonradiative decay mechanism which adds to the plasmon dissipation. The analytical results are supported with numerical simulations. The outlined phenomena provide the ideas and implications for applications involving manipulation of sound or excitation of surface plasmons.

Metallic films, in conjunction with biochemical-targeted probes, are expected to provide early diagnosis, targeted therapy and non-invasive monitoring for epidemiology applications [1-4]. The resonance wavelength peaks, both plasmonic and Wood-Rayleigh Anomalies (WRAs), in the scattering spectra are affected by the metallic architecture. As of today, much research has been devoted to extinction efficiency in the plasmonic region. However, Wood Rayleigh Anomalies (WRAs) typically occur at wavelengths associated with the periodic distance of the structures. A significant number of papers have already focused on the plasmonic region of the visible spectrum, but a less explored area of research was presented here; the desired resonance wavelength region was 400-500nm, corresponding to the WRA for the silver film with perforated hole with a periodic distance of 400nm. Simulations obtained from the discrete dipole approximation (DDA) method, show sharp spectral bands (either high or low scattering efficiencies) in both wavelength regions of the visible spectrum simulated from Ag film with cylindrical hole arrays. In addition, surprising results were obtained in the parallel scattering spectra, where the electric field is contained in the XY plane, when the angle between the metallic surface and the incident light was adjusted to 14 degrees; a bathochromic shift was observed for the WRA peak suggesting a hybrid resonance mode. Metallic films have the potential to be used in instrumental techniques for use as sensors, i.e. surface plasmon resonance affinity biosensors, but are not limited to such instrumental techniques. Although the research here was aimed towards affinity biosensors, other sensory designs can benefit from the optimized Ag film motifs. The intent of the study was to elucidate metal film motifs, when incorporated into instrumental analysis, allowing the quantification of genetic material in the visible region. Any research group that routinely benefits from quantification of various analytes in solution matrices will also benefit from this study, as there are a bewildering number of instrumental sensory methods and setups available.

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With the aim of developing a deeper understanding of particle behaviour within nano-hybrid materials, this thesis investigates the particle-particle and particle-polymer interactions that influence and control cellulose nanocrystal dispersion in aqueous and non-aqueous environments. / Cellulose nanocrystals (CNCs) are rigid rod-shaped nanoparticles derived from bio-based resources and are considered an emerging nanomaterial based on their commercial availability and favourable properties. CNCs have great potential as reinforcing agents in hybrid materials and composite applications if they are well-dispersed. Whereas colloidal stability is effectively described by established theories, dispersing nanoparticles from an aggregated state, and their interaction with polymers can be difficult to predict and control. Herein, the particle-particle and particle-polymer interactions that govern CNC dispersibility in aqueous and non-aqueous environments are examined. The surface chemistry, morphology and colloidal/thermal stability of CNCs from North American industrial producers were extensively characterized such that particle interactions could be reproducibly measured from a known starting material. Industrially produced CNCs compared well to those produced at the bench-scale, implying that laboratory results should be translatable to the development of new CNC-based products. To examine particle-particle interactions within dry CNC aggregates, a surface plasmon resonance-based platform was developed to monitor CNC film swelling in a range of solvents and salt solutions. Water was observed to interrupt particle-particle hydrogen bonding most effectively, however film stability, and ultimately particle aggregation, was maintained by strong van der Waals interactions. Moreover, particle spacing and overall film thickness was found to be independent of the CNC surface chemistries and surface charge densities examined, yet the rate of film swelling scaled with the ionic strength of the surrounding media. Polyethylene glycol (PEG) was used as a model, non-ionic, water-soluble polymer to investigate polymer adsorption to CNC surfaces in water. PEG did not adsorb to CNCs despite the abundance of hydroxyl groups, which is in direct contrast to silica particles that are well known to hydrogen bond with PEG. Combining the knowledge of both particle-particle and particle-polymer interactions, PEG nanocomposites reinforced with CNCs and silica were compared and particle dispersibility was related to composite performance. Although PEG does not adsorb to CNCs in aqueous environments, polymer adsorption does occur in dry polymer nanocomposites leading to good dispersibility and improved mechanical properties. Overall, the work presented here yields new insight into the forces that govern CNC dispersion and provides a foundation from which a variety of new CNC-based products can be developed. / Thesis / Doctor of Philosophy (PhD) / Using particles derived from renewable resources to reinforce plastics and other materials has the potential to make products lighter, stronger and more environmentally friendly. However, to make these products we need to understand how to control and distribute particles uniformly throughout hybrid/composite materials. This work uses particles extracted from trees and cotton, known as cellulose nanocrystals, to reveal which factors govern particle dispersion in reinforced composite materials. To do so, first the properties and performance of commercially available cellulose nanocrystals were extensively analyzed and compared to form the basis from which interactions can be understood. Next, particle films were measured in water, organic solvents and salt solutions to better understand how aggregated cellulose nanocrystals can be separated within composite materials. The interactions between water-soluble polymers and cellulose nanocrystals were then investigated to reveal how polymer adsorption impacts particle dispersibility. Finally reinforced polymer composites were prepared with uniformly distributed cellulose nanocrystals and the crystallization and mechanical properties were investigated. By developing a deeper understanding of the factors that control cellulose nanocrystal dispersion we can learn how to make a variety of new and improved environmentally conscious products.

Surface plasmon resonance (SPR) sensors using multiwavelength light coupling are investigated to probe changes in refractive index that occur as a result of chemical or biochemical processes. Traditional SPR sensors have used angle modulation to facilitate detection at the sensor surface; however, the multiwavelength approach is novel and brings new functionality to SPR sensors. The multiwavelength sensors are constructed on both fiber optic and bulk waveguides such as prisms. A thin metal film is deposited on the waveguide surface to support the surface plasmon (SP) mode. The evanescent field produced by light propagating through the waveguide can be coupled into the surface plasmon mode thus attenuating the transmitted light. This coupling is dependent upon phase matching between the light wavevector and the surface plasmon wavevector. The wavevectors are directly related to the wavelength of light, thickness of analyte on the sensor surface and the refractive index of the analyte. As these parameters change, the light output from the sensor will be affected. Other thin films can be subsequently deposited on the metal to functionalize the sensor surface for a particular analyte of interest. A theoretical background and details of the sensor construction is given. The developed sensors are tested in a variety of application systems. Experimental results for refractive index sensing in bulk liquid applications is shown. Observed sensitivity approaches that of conventional SPR techniques. Alkyl-thiol monolayer systems are studied to investigate kinetics of formation and the thickness resolution of the sensor. A biochemical system is investigated to compare the sensors with other immunoassay techniques. Ionic self-assembled monolayer (ISAM) systems are investigated to probe structure and determine their usefulness as an immobilization layer for biochemical species. A mathematical model based on Fresnel reflection equations is developed to predict sensor response. This model can be used to selectively vary sensor parameters to optimize the response for a specific analyte system or to calculate system parameters based on experimental results. Results from the various experiments are compared with the model. Experimental results and interpretations are discussed along with future work and potential improvements. Classical SPR sensors are also discussed along with comparisons with the multiwavelength sensors. Future improvements to SPR sensors design are considered, as is the application of the technology to high-throughput drug screening for pharmaceuticals. / Ph. D.

Natural polymers from renewable resources have attracted increasing interest as candidates for renewable energy and functional materials. In this work, the interactions between natural polymer thin films and biomacromolecules were studied via surface analysis techniques, such as a quartz crystal microbalance with dissipation monitoring (QCM-D), surface plasmon resonance (SPR) and atomic force microscopy (AFM). Chitinase activity on regenerated chitin (RChitin) films was studied by QCM-D and AFM. The optimal temperature and pH for chitinase activity on surfaces determined by QCM-D and AFM were consistent with bulk solution studies in the literature. Results from QCM-D also indicated that chitinase showed higher activity on fully acetylated chitin than highly deacetylated chitosan. Nanocrystalline chitin (Chitin NC) thin films were prepared by spincoating a nanocrystalline chitin colloidal suspension onto solid surfaces. Solvent exchange experiments via QCM-D with H2O/D2O revealed that Chitin NC films had more water than RChitin films of similar thickness. Results from QCM-D demonstrated that Chitin NC films had high bovine serum albumin loading capacity, and chitinase not only degraded, but also caused swelling of the chitin nanocrystals. Adsorption of human serum albumin (HSA) and fibrinogen (HFN) onto bare gold, regenerated cellulose (RC) and RChitin thin films was studied by SPR and QCM-D. Studies by SPR indicated that HSA and HFN formed close-packed monolayers on gold surfaces and sub-monolayers on polysaccharide surfaces, and the adsorption affinity of HSA for polysaccharide surfaces was greater than that of HFN. Results from QCM-D and SPR showed that the protein layers on polysaccharide surfaces had more associated water than proteins on gold surfaces. The dehydrogenative polymerization of monolignols catalyzed by physically immobilized horseradish peroxidase was investigated using QCM-D and AFM. Results from QCM-D and AFM showed that coniferyl and p-coumaryl alcohol underwent polymerization directly, whereas sinapyl alcohol required the addition of a nucleophile for polymerization. Studies by QCM-D and AFM also indicated that the surface-initiated polymerization was greatly affected by the support surface, monolignol concentration, hydrogen peroxide concentration and temperature. Thin films of dehydrogenative polymer (DHP), kraft (KL), organosolv (OL) and milled wood (MWL) lignins were used to study the enzymatic degradation of lignin mediated by lignin peroxidase (LiP) and manganese peroxidase (MnP). Results from QCM-D showed that the initial rates for degradation catalyzed by LiP increased in the order: KL < OL < MWL < guaiacyl DHP (G-DHP) < p-hydroxyphenyl DHP (H-DHP). In contrast, manganese peroxidase only degraded DHP films with a faster initial rate for G-DHP than H-DHP. Adsorption of hemicelluloses onto KL, OL and MWL thin films was studied by QCM-D and SPR. Results from QCM-D showed that hemicelluloses with different structures displayed very different adsorption behavior. Adsorption isotherms from QCM-D and SPR indicated that xyloglucan possessed stronger affinity for KL and OL films than MWL films. Data from QCM-D and SPR revealed that xyloglucan formed less hydrated layers on lignin surfaces compared to RC surfaces, and the adsorbed xyloglucan layers on different lignin films had similar percentages of coupled water. / Ph. D.

A mixed self assembling monolayer (mSAM) chip with attached heparin was developed to analyze heparin-protein interactions using a Reichert Inc, SR7000, surface plasmon resonance (SPR) instrument. The heparin was attached via streptavidin-biotin linkage where the streptavidin was covalently coupled to the mSAM and biotinylated heparin bound to it. These chips were then used to quantify the interactions of fibroblast growth factor-2 (FGF-2) with the surface bound heparin. Kinetic rate constants of association and disassociation were calculated. The association data of FGF-2 with heparin was fit to a single compartment, well-mixed model as the data did not exhibit mass transfer limitations. The results suggested that rebinding was prevalent and observed disassociation rates differed significantly in the presence of competing soluble heparin during disassociation. Our results indicate that the Reichert instrument and mSAM chips can be used to analyze heparin-protein interactions but that a careful protocol, outlined in this thesis, should be followed to obtain optimal data. / Master of Science

Insulin-like growth factor-I is a small growth factor known to signal in a variety of mammalian cells through the IGF-I cell surface receptor (IGF-IR). A unique feature of the IGF-I system is the regulation of this binding by soluble IGF binding proteins. Recent studies from our laboratory show that there is a pH dependence in the association of IGF-I with the cell surface in the presence of IGFBP-3 which suggested increased association of IGF-I with IGFBP-3 at low pH. We studied cell free interaction of IGF-I and IGFBP-3 as a function of pH using surface plasmon resonance (SPR) in order to understand the mechanism that causes the increased association. In our studies three different SPR instruments with different surfaces for immobilization of one of the binding partners were used: a Leica Bio-SPR 9000 with a low molecular weight carboxymethylated dextran (CMD) surface, a BIAcore 2000 with a high molecular weight CMD surface and a Leica SPR 2001 Alpha with a planar mixed self-assembled monolayer (mSAM) surface. Since the experimental system we used was transport sensitive, only the mSAM surface, under optimized conditions, produced results that fit to a single site model. Results suggest that use of CMD layers for immobilization of one partner of a high-affinity binding complex can result in transport limited binding for which simple analysis is inappropriate. Future studies are planned to expand the work with the mSAM surface to elucidate whether a significant difference between the binding parameters as a function of pH exists. / Master of Science