The putative attachment protein G of pneumonia virus of mice (PVM), a member of the Pneumoviruses, is an important virulence factor with so far ambiguous function in a virus-cell as well as in virus-host context. The sequence of the corresponding G gene is characterized by significant heterogeneity between and even within strains, affecting the gene and possibly the protein structure. This accounts in particular for the PVM strain J3666 for which two differing G gene organizations have been described: a polymorphism in nucleotide 65 of the G gene results in the presence of an upstream open reading frame (uORF) that precedes the main ORF in frame (GJ366665A) or extension of the major G ORF for 18 codons (GJ366665U). Therefore, this study was designed to analyse the impact of the sequence variations in the respective G genes of PVM strains J3666 and the reference strain 15 on protein expression, replication and virulence. First, the controversy regarding the consensus sequence of PVM J3666 was resolved. The analysis of 45 distinct cloned fragments showed that the strain separated into two distinct virus populations defined by the sequence and structure of the G gene. This division was further supported by nucleotide polymorphisms in the neighbouring M and SH genes. Sequential passage of this mixed strain in the cell line standardly used for propagation of virus stocks resulted in selection for the GJ366665A-containing population in one of two experiments pointing towards a moderate replicative advantage. The replacement of the G gene of the recombinant PVM 15 with GJ366665A or GJ366665U, respectively, using a reverse genetic approach indicated that the presence of uORF within the GJ366665A significantly reduced the expression of the main G ORF on translational level while the potential extension of the ORF in GJ366665U increased G protein expression. In comparison, the effect of the G gene-structure on virus replication was inconsistent and dependent on cell line and type. While the presence of uORF correlated with a replication advantage in the standardly used BHK-21 cells and primary murine embryonic fibroblasts, replication in the murine macrophage cell line RAW 264.7 did not. In comparison, the GJ366665U variant was not associated with any effect on replication in cultured cells at all. Nonetheless, in-vivo analysis of the recombinant viruses associated the GJ366665U gene variant, and hence an increased G expression, with higher virulence whereas the GJ366665A gene, and therefore an impaired G expression, conferred an attenuated phenotype to the virus. To extend the study to other G gene organizations, a recombinant PVM expressing a G protein without the cytoplasmic domain and for comparison a G-deletion mutant, both known to be attenuated in vivo, were studied. Not noticed before, this structure of the G gene was associated with a 75% reduction in G protein expression and a significant attenuation of replication in macrophage-like cells. This attenuation was even more prominent for the virus lacking G. Taking into consideration the higher reduction in G protein levels compared to the GJ366665A variant indicates that a threshold amount of G is required for efficient replication in these cells. In conclusion, the results gathered indicated that the expression levels of the G protein were modulated by the sequence of the 5’ untranslated region of the gene. At the same time the G protein levels modulated the virulence of PVM. / Das mutmaßliche „attachment“ Protein G des Pneumonievirus der Maus (PVM), einem Mitglied des Genus Pneumovirus, ist ein bedeutender Virulenzfaktor, mit allerdings noch nicht vollständig verstandener Funktion. Dabei zeichnet sich die Sequenz des G-Gens durch Nukleotid-Polymorphismen und damit verbundenen Variationen in der Genorganisation und möglicherweise der Proteinstruktur sowohl zwischen als auch innerhalb von PVM-Stämmen aus. Insbesondere für den PVM-Stamm J3666 wurden zwei verschiedene Organisationen des G-Gens beschrieben: ein Polymorphismus des Nukleotids 65 des G-Genes erzeugt einen neuen „upstream Open reading frame“ (uORF), der dem eigentlichen G-ORF vorausgeht (GJ366665A), oder führt zu einer Verlängerung des eigentlichen G-ORF von G um 18 Kodons (GJ366665U). Ziel dieser Studie war es deshalb, die Auswirkung dieser Sequenzvariabilitäten der für PVM J3666 beschriebenen G-Gene im Vergleich zu dem des Referenzstamms PVM 15 bezüglich Proteinexpression, der Virusreplikation und der Virulenz zu untersuchen. Als erstes wurden die beschriebenen Sequenzunterschiede bezüglich des PVM-Stamms J3666 untersucht. Die Analyse von 45 verschiedenen klonierten Fragmenten von PVM J3666 zeigte, dass es sich bei diesem Stamm eigentlich um zwei separate Viruspopulationen handelt, die sich durch die Sequenz und Struktur des G-Genes definieren lassen. Diese Unterscheidung wird durch weitere Nukleotid-Polymorphismen in den benachbarten Genen, M und SH, gestärkt. Sequenzielle Passagierung dieses gemischten Stammes in der standardmäßig zur Virusanzucht verwendeten BHK-21-Zelllinie resultierte in einem von zwei Experimenten in der Selektion der GJ366665A-Population, das ein Hinweis auf einen moderaten Replikationsvorteil darstellt. Der Austausch des G-Gens des Referenzstamms PVM 15 durch GJ366665A oder GJ366665U mithilfe der Reversen Genetik, zeigte, dass der uORF innerhalb von GJ366665A zu einer deutlich reduzierten Expression des eigentlichen G-ORF führt. Andererseits führte die potenzielle Verlängerung des ORF in GJ366665U zu einer im gleichen Maße erhöhten Expression des G-Proteins. Dagegen war der Einfluss der G-Genorganisation auf die Virusvermehrung in Zellkultur in Abhängigkeit von Zelllinie und Zelltyp inkonsistent. Während ein uORF mit einem Replikationsvorteil in BHK-21-Zellen und primären murinen embryonen Fibroblasten korrelierte, war dies in der murinen Makrophagen-Zelllinie RAW 264.7 nicht zu beobachten. Im Vergleich dazu konnte die GJ366665U-Variante nicht mit einem Einfluss auf die Virusvermehrung in Verbindung gebracht werden. Nichtsdestotrotz, konnte die GJ366665U-Variante, und damit eine erhöhte Expression von G, mit einer gesteigerten Virulenz assoziiert werden, während die GJ366665A-Variante, d. h. eine verringerte G-Expression zur Attenuierung des Virus führte. Die Untersuchungen wurden auf weitere G-Genstrukturen, d.h. ein rekombinantes PVM, rPVM-Gt, das ein N-terminal verkürztes G-Protein exprimiert, ausgeweitet. Zum Vergleich wurde eine Deletionsmutante des kompletten G-Gens, rPVM-ΔG, mit einbezogen. Von beiden Viren war bereits bekannt, dass sie in vivo attenuiert sind. Die Organisation des Gt-Gens war mit einer um 75 % verringerten Expression des entsprechenden Proteins assoziiert, was zuvor nicht beobachtet worden war. Zugleich zeigte rPVM-Gt eine deutliche Attenuierung der Replikation in RAW 264.7-Zellen und primären Mausmakrophagen, die von der G-Deletionsmutante noch übertroffen wurde. Die im Vergleich zu der GJ366665A-Variante deutlich höhere Reduktion der G-Expression dieser beiden G-Mutanten in Betracht ziehend, scheint dies darauf hinzuweisen, dass eine bestimmte Mindestexpression von G für eine effiziente Virusvermehrung in diesen Zellen benötigt wird. Zusammenfassend deuten die erhaltenen Ergebnisse darauf hin, dass die Expression des G-Proteins durch die jeweiligen 5’ nicht-translatierte Region des Gens moduliert wird, was einen neuen Mechanismus für Negativstrang-RNA-Viren darstellt. Zugleich moduliert die Expressionsrate von G die Virulenz von PVM.

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Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal.

Introdução: A síndrome Richieri-Costa-Pereira (SRCP; OMIM 268305) é uma disostose acrofacial autossômica recessiva caracterizada por fissura mandibular mediana associada a outros defeitos craniofaciais e de membros. Objetivo: Mapear o gene causador da SRCP. Métodos e Resultados: O gene da doença foi mapeado para uma região de 128.5kb no cromossomo 17q25.3, por meio de análise de identidade por descendência, em 22 genealogias. As estratégias de sequenciamento identificaram ampliação de motivos com 18 ou 20 nucleotídeos da região 5\' não traduzida (5\' UTR) do gene EIF4A3. Observou-se 15 ou 16 repetições dos motivos nos indivíduos afetados e de 3 a 12 repetições nos indivíduos do grupo controle (520 indivíduos). Estudo de expressão detectou níveis de transcrição do gene EIF4A3 acentuadamente reduzidos nas células brancas do sangue de um dos indivíduos com SRCP, quando comparado aos cinco controles testados. Estudo funcional por meio de modelamento do ortólogo eif4a3 em zebrafish resultou no subdesenvolvimento de estruturas cartilaginosas e ósseas craniofaciais derivadas do primeiro ao quinto arcos faríngeos, similar às alterações craniofaciais observadas nos indivíduos com SRCP. Conclusão: Estes estudos confirmam que a SRCP é causada por deficiência de EIF4A3 e, ainda, que esse gene é essencial para a morfogênese da mandíbula, da laringe e dos membros, importantes estruturas comprometidas na SRCP. / Introduction: Richieri-Costa-Pereira syndrome (RCPS; MIM#268305) is an autosomal recessive acrofacial dysostosis characterized by mandibular median cleft associated with other craniofacial and limb defects. Purpose: Map the gene that causes the SRCP. Methods and Results: We mapped the disease gene to a 128.5kb region on chromosome 17q25.3 through identity-by-descent analysis in 22 genealogies. Sequencing strategies identified an expansion of a complex region with several repeats of 18 or 20-nucleotide motifs in the 5 untranslated region (5´UTR) of EIF4A3, which contained from 15 or 16 repeats in the affected patients and from 3 to 12 repeats in 520 healthy individuals. EIF4A3 transcriptional levels were markedly reduced in white blood cells of a RCPS patient as compared to controls. Furthermore, modeling of the ortholog eif4a3 in zebrafish lead to underdevelopment of several cartilage and bone craniofacial structures derived from the 1st to 5th pharyngeal arches, in agreement with the craniofacial alterations of RCPS. Conclusion: These studies thus confirm that RCPS is caused by deficiency of EIF4A3, and assign EIF4A3 for the first time as essential for mandibular and also for larynx and limb morphogenesis, important structures impaired in RCPS.

A asma brônquica é doença inflamatória crônica complexa das vias aéreas provocada pela interação de fatores genéticos e ambientais. O gene HLA-G (Antígeno Leucocitário Humano G) foi identificado como gene de susceptibilidade à asma, codificando uma molécula não clássica do complexo principal de histocompatibilidade (MHC, do inglês Major Histocompatibility Complex) de classe I com função moduladora das células do sistema imunológico. Nesse contexto, avaliamos o papel do HLA-G na asma afim de identificar genótipos, alelos e haplótipos associados com proteção ou susceptibilidade nas diferentes formas de apresentação da doença. Investigamos os sítios polimórficos da região 3\' não traduzida (3\'UTR-untranslated region) do HLA-G (14 pb Ins/Del, + 3001 C/T, +3003 C/T, +3010 C/G, +3027 A/C, +3035 C/T, +3142 C/G, +3187 A/G e +3196 C/G) em 118 pacientes asmáticos estratificados em asma leve ou moderada e grave e 183 indivíduos brasileiros saudáveis. Testes de associação foram realizados para avaliar as frequências dos genótipos, alelos e haplótipos da 3\'UTR do HLA-G na asma brônquica, considerada como grupo total ou estratificada de acordo com a gravidade da doença. Nossos resultados demonstraram que as frequências dos alelos +3001 C, +3003 C, +3035 C e +3196 C e do genótipo 14 bp DI estavam aumentadas no grupo total e nas diversas formas de apresentação da doença. Os alelos +3010 C e +3142 G e o genótipo +3010 CC estavam mais representados em pacientes com asma leve ou moderada. Por outro lado, os genótipos +3010 GG, +3142 CG e +3187 AG e o alelo +3010 G apresentaram maior frequência nos asmáticos graves, estando fortemente associados com o desenvolvimento da forma grave da asma. Além disso, os genótipos 14 pb II, +3010 CC e +3142 GG e o alelo +3010 C conferiram proteção à asma grave. Além disso, identificamos um haplótipo da 3\'UTR do HLA-G associado ao desenvolvimento de asma brônquica, a UTR-8, e um haplótipo que conferiu proteção contra a mesma, a UTR-7. Concluindo, neste estudo, observamos frequências diferenciais de sítios polimórficos do segmento 3\'UTR do HLA-G associados com predisposição à asma brônquica e, também, com a gravidade da doença / Bronchial asthma is a complex chronic inflammatory disease of the airways caused by the interaction of genetic susceptibility and environmental factors. The HLA-G (Human Leucocyte Antigen G) gene was identified as a susceptible marker for bronchial asthma, encoding a nonclassical Major Histocompatibility Complex (MHC) class I molecule, considered to be an important immune check point modulator. In the present study, we evaluated the role of HLA-G in bronchial asthma susceptibility and disease severity, evaluating HLA-G genotypes, alleles or haplotypes. We investigated the HLA-G 3\'Untraslated region (3\'UTR) polymorphic sites (14-bp INS/DEL, +3001, +3003C/T, +3010C/G, +3027A/C, +3035C/T, +3142C/G, +3187A/G, and +3196C/G) in 118 asthmatic Brazilian patients, stratified according to disease severity into mild/moderate and severe asthma, and in 183 healthy individuals. HLA-G 3\'UTR variation sites were individually analyzed or lumped together as haplotypes. Our results showed that frequencies of +3001 C, +3003 C, +3035 C e +3196 C alleles and 14 pb ID genotype were increased in asthma group considered as a whole and in patients stratified according to disease severity. The +3010 C and .3142 G alleles and the +3010 CC genotype were overrepresented in patients with mild and moderate forms. Similarly, the +3010 GG, +3142 CG, +3187 AG genotypes and +3010 G allele presented increased frequency in severe asthmatic patients. In contrast, the 14 pb II, +3010 CC and +3142 GG genotypes and +3010 C allele conferred protection against severe asthma. In addition, we identified a 3\'UTR HLA-G haplotype that was associated with bronchial asthma development (UTR-8) and one haplotype that conferred protection against asthma (UTR-7). In conclusion, in this study, we observed differential frequencies at HLA-G 3\'UTR polymorphic sites that are associated with bronchial asthma predisposition and, also, with disease severity

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

Das Enzym Glutaminsynthetase (GS) wird in Organen mit niedriger enzymatischer Aktivität in zumeist allen Zellen exprimiert. Auf der anderen Seite ist die Expression in Geweben mit hoher Aktivität auf spezialisierte Zellen beschränkt. So findet man in der Säugerleber Expression der GS nur in Hepatozyten, die in ein bis drei Zellreihen um die Zentralvenen lokalisiert sind. In der vorliegenden Arbeit wurde die Frage gestellt, ob der zwischen verschiedenen Spezies hoch konservierte 3’-Bereich der nicht-translatierten Region des GS-Gens an der Regulation der Expression und der Zonierung beteiligt ist. Hierzu wurden Reportergenstudien, transiente Transfektionen sowie Northern-Blot-Experimente unter Verwendung von primären Hepatozyten aus dem periportalen und perizentralen Bereich der Rattenleber durchgeführt. Die Ergebnisse der Arbeit lassen eine über das 3’-Ende vermittelte selektive Destabilisierung der GS-mRNA in periportalen (GS-negativen) Hepatozyten vermuten. Zudem zeigte sich, dass die Wechselwirkung des 3’-UTRs mit Bereichen des 5’-UTRs, bzw. dem GS-Promotor für die eigentliche Regulation verantwortlich ist. Es lässt sich vermuten, dass eine posttranskriptionale Regulation neben den in den letzten Jahren aufgeklärten Mechanismen der Regulation der Transkription mit zur Feinsteuerung der Expression der GS beiträgt.

Submitted by Ana Maria Fiscina Sampaio (fiscina@bahia.fiocruz.br) on 2012-07-25T21:04:26Z No. of bitstreams: 1 Marcela Kelly Astete Gómez Estudo dos alelos da região....pdf: 1187772 bytes, checksum: d35081c0e79dae64122fa5e5a15c60c3 (MD5) / Made available in DSpace on 2012-07-25T21:04:26Z (GMT). No. of bitstreams: 1 Marcela Kelly Astete Gómez Estudo dos alelos da região....pdf: 1187772 bytes, checksum: d35081c0e79dae64122fa5e5a15c60c3 (MD5) Previous issue date: 2011 / Fundação Oswaldo Cruz. Centro de Pesquisas Gonçalo Moniz. Salvador, Bahia, Brasil / A Síndrome do X-Frágil (SXF) é a principal causa hereditária de deficiência mental de herança dominante ligada ao cromossomo X. Em 1991, o gene FMR1 (Fragile X Mental Retardation 1) foi descoberto como responsável pela SXF. De acordo com o número de repetições, os alelos se dividem em: (a) alelo normal compreendendo 6 a 55 repetições (b) pré-mutado: 61 a 200 repetições e (c) mutado: com >200 repetições. Os alelos que apresentam 45 a 60 repetições são considerados como zona intermediária ou gray-zone. A base molecular dessa doença é bastante peculiar quando comparada com os padrões típicos observados em outras desordens de etiologia genética. As pré-mutações podem agregar-se de forma silenciosa por muitas gerações de uma família antes de se expandir para a mutação completa, levando aos sinais clínicos da doença. Na Bahia existem poucas pesquisas envolvendo esta doença, consequentemente, é desconhecida sua frequência nessa região. Portanto, este trabalho tem como objetivo detectar a frequência das classes alélicas do gene FMR1 em uma amostra de indivíduos do sexo masculino da população geral de Salvador-BA. Este estudo foi realizado em 511 homens provenientes de outro amplo estudo desenvolvido pelo Instituto de Saúde Coletiva (ISC) da Universidade Federal da Bahia (UFBA) sendo utilizada a técnica da PCR e posterior classificação dos alelos baseando-se na relação entre o número de repetições CGG e o tamanho do fragmento obtido na PCR. Dos 511 homens analisados no presente estudo observou-se predominância de alelos normais pertencentes à classe 2 (11 a 26 repetições CGG) em 73,70% dos indivíduos analisados, seguido da classe 3 (27 a 40 repetições CGG) em 25,10% dos indivíduos. Apenas 1,20% foram incluídos na classe 1 (<10 repetições CGG) e nenhum alelo foi encontrado nas classes 4 (41 a 60 repetições CGG), classe 5 ( >60 repetições CGG) e classe 6 (>200 repetições CGG). Este é o primeiro estudo utilizando a técnica da PCR para detecção dos alelos do gene FMR1 em uma população geral de Salvador-BA, podendo direcionar futuros trabalhos envolvendo o gene FMR1 tanto para o estado da Bahia, quanto para a região Nordeste e também minimizar deficiências existentes em termos de diagnóstico da SXF na cidade de Salvador-BA. / The Fragile X syndrome (FXS) is the leading cause of inherited mental deficiency (MD) of dominant inheritance linked to X chromosome. In 1991, the FMR1 gene (Fragile X Mental Retardation 1) was discovered as responsible for FXS. According to the number of repetitions, the alleles are divided in: (a) normal stable allele comprising 6 to 55 repetitions; (b) premutation: 61 to 200 repetitions and (c) mutant with> 200 repeats. The molecular basis of this disease is quite unusual when compared with the typical patterns seen in other disorders of genetic etiology. The pre-change can add up so silent for many generations of a family before they expand to full mutation, leading to clinical signs of disease. In Bahia there are few studies involving this disease, therefore, its frequency is unknown in this region. So, this study aims to detect the frequency of allelic classes of FMR1 gene in a sample of males from the general population of Salvador-BA city. This study was conducted on 511 samples using the PCR technique and subsequent classification of alleles based on the number of CGG repeats and the size of the fragments in PCR. Of the 511 individuals examined was found to predominate among the normal alleles the class 2 (11 to 26 repetitions) with 73,70% followed alleles analyzed in Class 3 (27 to 40 repetitions) with 25,10%, and Class 1 (<10 repetitions) with only one 1,20% . No allele was found in class 4 (41 to 60 repetitions), which corresponds to gray zone and class 5 (> 60 repetitions) for the premutation and class 6 (>200 repetitions) the corresponds full mutation.This is the first study using the PCR technique for detection of alleles of the FMR1 gene in a general population of Salvador, Bahia, and may direct future studies involving the FMR1 gene for both the state of Bahia, the Northeast and to also minimize deficiencies existing in the diagnosis of FXS in Salvador, Bahia.

Introdução: A síndrome Richieri-Costa-Pereira (SRCP; OMIM 268305) é uma disostose acrofacial autossômica recessiva caracterizada por fissura mandibular mediana associada a outros defeitos craniofaciais e de membros. Objetivo: Mapear o gene causador da SRCP. Métodos e Resultados: O gene da doença foi mapeado para uma região de 128.5kb no cromossomo 17q25.3, por meio de análise de identidade por descendência, em 22 genealogias. As estratégias de sequenciamento identificaram ampliação de motivos com 18 ou 20 nucleotídeos da região 5\' não traduzida (5\' UTR) do gene EIF4A3. Observou-se 15 ou 16 repetições dos motivos nos indivíduos afetados e de 3 a 12 repetições nos indivíduos do grupo controle (520 indivíduos). Estudo de expressão detectou níveis de transcrição do gene EIF4A3 acentuadamente reduzidos nas células brancas do sangue de um dos indivíduos com SRCP, quando comparado aos cinco controles testados. Estudo funcional por meio de modelamento do ortólogo eif4a3 em zebrafish resultou no subdesenvolvimento de estruturas cartilaginosas e ósseas craniofaciais derivadas do primeiro ao quinto arcos faríngeos, similar às alterações craniofaciais observadas nos indivíduos com SRCP. Conclusão: Estes estudos confirmam que a SRCP é causada por deficiência de EIF4A3 e, ainda, que esse gene é essencial para a morfogênese da mandíbula, da laringe e dos membros, importantes estruturas comprometidas na SRCP. / Introduction: Richieri-Costa-Pereira syndrome (RCPS; MIM#268305) is an autosomal recessive acrofacial dysostosis characterized by mandibular median cleft associated with other craniofacial and limb defects. Purpose: Map the gene that causes the SRCP. Methods and Results: We mapped the disease gene to a 128.5kb region on chromosome 17q25.3 through identity-by-descent analysis in 22 genealogies. Sequencing strategies identified an expansion of a complex region with several repeats of 18 or 20-nucleotide motifs in the 5 untranslated region (5´UTR) of EIF4A3, which contained from 15 or 16 repeats in the affected patients and from 3 to 12 repeats in 520 healthy individuals. EIF4A3 transcriptional levels were markedly reduced in white blood cells of a RCPS patient as compared to controls. Furthermore, modeling of the ortholog eif4a3 in zebrafish lead to underdevelopment of several cartilage and bone craniofacial structures derived from the 1st to 5th pharyngeal arches, in agreement with the craniofacial alterations of RCPS. Conclusion: These studies thus confirm that RCPS is caused by deficiency of EIF4A3, and assign EIF4A3 for the first time as essential for mandibular and also for larynx and limb morphogenesis, important structures impaired in RCPS.