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Molecular studies on cucurbit yellow stunting disorder virusLivieratos, Ioannis January 1999 (has links)
No description available.
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ANNOTATION OF WHITEFLY EXPRESSED SEQUENCE TAGS AND VALIDATION OF GENES WITH POTENTIAL SIGNIFICANCE TO BEGOMOVIRUS TRANSMISSIONSaripalli, Chandrasekhar January 2008 (has links)
The whitefly Bemisia tabaci (Gennadius) (Hemiptera) complex is the sole arthropod vector of the genus, Begomovirus (family, Geminiviridae), which causes debilitating diseases of plants, worldwide. Virus-vector specificity is conferred through co-evolved, whitefly vector-viral capsid protein-protein interactions. Membrane-bound receptors are thought to facilitate virion passage across the gut-hemolymph and hemolymph-salivary gland interfaces, and virion circulation is expected to elicit innate defense and stress-related proteins. Our goal was to select and validate genes involved in whitefly-mediated transmission. Whitefly expressed sequence tags (ESTs) from a previous study were re-annotated, taking advantage of newly available insect EST, UniGene, and Protein sequences. Six whitefly genes and transcripts, actin, cyclophilin, GBLP, GAPDH 3, knottin, and whitefly endosymbiont HSP60, representing three gene ontology (GO) categories, were analyzed using PCR or RT- PCR, respectively, followed by cloning and DNA sequencing. Analysis confirmed the presence of all six whitefly genes and five transcripts, with the knottin transcript being undetectable.
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Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/QXie, Wen, Chen, Chunhai, Yang, Zezhong, Guo, Litao, Yang, Xin, Wang, Dan, Chen, Ming, Huang, Jinqun, Wen, Yanan, Zeng, Yang, Liu, Yating, Xia, Jixing, Tian, Lixia, Cui, Hongying, Wu, Qingjun, Wang, Shaoli, Xu, Baoyun, Li, Xianchun, Tan, Xinqiu, Ghanim, Murad, Qiu, Baoli, Pan, Huipeng, Chu, Dong, Delatte, Helene, Maruthi, M. N., Ge, Feng, Zhou, Xueping, Wang, Xiaowei, Wan, Fanghao, Du, Yuzhou, Luo, Chen, Yan, Fengming, Preisser, Evan L., Jiao, Xiaoguo, Coates, Brad S., Zhao, Jinyang, Gao, Qiang, Xia, Jinquan, Yin, Ye, Liu, Yong, Brown, Judith K., Zhou, Xuguo “Joe”, Zhang, Youjun 05 1900 (has links)
The sweetpotato whitefly Bemisia tabaci is a highly destructive agricultural and ornamental crop pest. It damages host plants through both phloem feeding and vectoring plant pathogens. Introductions of B. tabaci are difficult to quarantine and eradicate because of its high reproductive rates, broad host plant range, and insecticide resistance. A total of 791 Gb of raw DNA sequence from whole genome shotgun sequencing, and 13 BAC pooling libraries were generated by Illumina sequencing using different combinations of mate-pair and pair-end libraries. Assembly gave a final genome with a scaffold N50 of 437 kb, and a total length of 658 Mb. Annotation of repetitive elements and coding regions resulted in 265.0 Mb TEs (40.3%) and 20 786 protein-coding genes with putative gene family expansions, respectively. Phylogenetic analysis based on orthologs across 14 arthropod taxa suggested that MED/Q is clustered into a hemipteran clade containing A. pisum and is a sister lineage to a clade containing both R. prolixus and N. lugens. Genome completeness, as estimated using the CEGMA and Benchmarking Universal Single-Copy Orthologs pipelines, reached 96% and 79%. These MED/Q genomic resources lay a foundation for future 'pan-genomic' comparisons of invasive vs. noninvasive, invasive vs. invasive, and native vs. exotic Bemisia, which, in return, will open up new avenues of investigation into whitefly biology, evolution, and management.
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Genetic variability of the whitefly Bemisia tabaci and its secondary endosymbionts in the Arabian PeninsulaRagab, Alaa I. 05 1900 (has links)
The whitefly Bemisia tabaci species complex has been well documented as one of the
most economically important emergent plant virus vectors, through serious feeding
damage to its broad range of plant hosts and transmission of plant viruses to important
agricultural crops. It has been shown to have associations with endosymbionts which
have significant effects on the insect fitness. The purpose of this study was to provide
information for the biotype and secondary endosymbiont distribution for B. tabaci
populations in the relatively unstudied Arabian peninsula. The geographical localization
and variation in endosymbiont populations across the region were identified using a
sequence-driven analysis of the population genetics of the secondary endosymbiont. Live
field specimens were collected from 22 different locations in the region and preserved in
70% ethanol for genetic studies. Previously established procedures were used to extract
and purify total insect DNA from 24-30 individual whiteflies for each location (Frohlich
et al., 1999; Chiel et al., 2007). Specimens were subjected to PCR amplification using the
respective 16S rDNAprimers for the Rickettsia, Hamiltonella, and Wolbachia to amplify
endosymbiont DNA. PCR was run with primers for the highly conserved whitefly
mitochondrial cytochrome oxidase subunit I (COI) gene for biotyping. Samples were
sequenced using the Sanger method and the data analyzed to correlate the presence,
prevalence and geographical distribution of endosymbionts in B. tabaci. Phylogenies
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were constructed to track evolutionary differences amongst the endosymbionts and
insects and how they have influenced the evolution of the regional populations. Samples
were characterized by differences in the genomes and endosymbionts of common
whitefly ‘biotypes’ that have different host plant preferences, vector capacities and
insecticide resistance characteristics. It was found that the B biotype is the predominant
haplotype, with no evidence of the Q biotype. All endosymbionts were detected, with
Hamiltonella as the most predominant. Several instances of co-infection by two or more
endosymbionts were observed. Samples from the geographically isolated and
mountainous region of Fayfa demonstrated higher genetic variability compared to the
other locations, leading to the possible identification of a new haplotype, as well as the
first time identification of the A biotype in the region.
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Molecular characterization of a naturally occurring intraspecific recombinant begomovirus with close relatives widespread in southern ArabiaAl-Saleh, Mohammed, Al-Shahwan, Ibrahim, Brown, Judith, Idris, Ali January 2014 (has links)
BACKGROUND:Tomato leaf curl Sudan virus (ToLCSDV) is a single-stranded DNA begomovirus of tomato that causes downward leaf curl, yellowing, and stunting. Leaf curl disease results in significant yield reduction in tomato crops in the Nile Basin. ToLCSDV symptoms resemble those caused by Tomato yellow leaf curl virus, a distinct and widespread begomovirus originating in the Middle East. In this study, tomato samples exhibiting leaf curl symptoms were collected from Gezira, Sudan. The associated viral genome was molecularly characterized, analyzed phylogenetically, and an infectious clone for one isolate was constructed.FINDINGS:The complete genomes for five newly discovered variants of ToLCSDV, ranging in size from 2765 to 2767-bp, were cloned and sequenced, and subjected to pairwise and phylogenetic analyses. Pairwise analysis indicated that the five Gezira isolates shared 97-100% nucleotide identity with each other. Further, these variants of ToLCSDV shared their highest nucleotide identity at 96-98%, 91-95%, 91-92%, and 91-92% with the Shambat, Gezira, Oman and Yemen strains of ToLCSDV, respectively. Based on the high maximum nucleotide identities shared between these ToLCSDV variants from Gezira and other previously recognized members of this taxonomic group, they are considered isolates of the Shambat strain of ToLCSDV. Analysis of the complete genome sequence for these new variants revealed that they were naturally occurring recombinants between two previously reported strains of ToLCSDV. Finally, a dimeric clone constructed from one representative ToLCSV genome from Gezira was shown to be infectious following inoculation to tomato and N. benthamiana plants.CONCLUSION:Five new, naturally occurring recombinant begomovirus variants (>96% shared nt identity) were identified in tomato plants from Gezira in Sudan, and shown to be isolates of the Shambat strain of ToLCSDV. The cloned viral genome was infectious in N. benthamiana and tomato plants, and symptoms in tomato closely resembled those observed in field infected tomato plants, indicating the virus is the causal agent of the leaf curl disease. The symptoms that developed in tomato seedlings closely resembled those observed in field infected tomato plants, indicating that ToLCSDV is the causal agent of the leaf curl disease in Gezira.
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Cross-commodity Guidelines for Neonicotinoid Insecticides in ArizonaPalumbo, John C., Ellsworth, Peter C., Dennehy, Timothy J. 05 1900 (has links)
4 pp. / Arizona enjoys a sustained recovery from the devastating whitefly outbreaks of the early 1990's. This success is built on an IPM strategy that includes the use of selective and effective chemistry. Admire has been a key soil insecticide protecting vegetables and produce throughout Arizona and is the first member of a burgeoning class of chemistry known as the neonicotinoids. New members of this valuable, reduced-risk, class of chemistry are now available to agricultural producers, placing a burden on users of these compounds to adopt rational plans for sustaining their efficacy. This consensus document represents our best guess efforts to limit and share this chemistry among different agricultural interests. Our goal is to preserve the long-term efficacy of the neonicotinoids and protect growers' interests in sustainable and economical whitefly management. Through identification of crop communities (i.e., "multi-crop", "cotton-intensive", and "cotton/melon") common to Arizona agriculture, we have sculpted sensible plans of use that should allow access to this valuable chemistry for everyone, while protecting it from resistance.
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WHITEFLY-TRANSMITTED VIRUSES OF THE SOUTHWEST (PLANT, INSECT-TRANSMITTED GEMINIVIRUSES).BROWN, JUDITH KAY. January 1984 (has links)
Three distinct plant viruses, transmitted by the tobacco whitefly Bemisia tabaci Genn., were associated with diseased food or fiber crops grown in the southwestern deserts of Arizona. The cotton leaf crumple virus (CLCV), thought to affect only cotton Gossypium (L.) spp., is now known to infect other malvaceous plants and members of the Convolvulaceae and Leguminosae. Results of an experimental host range study suggest that potential virus-vector reservoirs may exist in cotton growing regions which include both weeds and cultivated plants. Geminivirus-like (GVL) particles of ∼18 x 30 nm were isolated for the first time from CLCV-infected bean, Phaseolus vulgaris (L.), 'Red Kidney', a plant which was a better purification host than cotton. Studies of CLCV-vector relationships indicated that the acquisition- and inoculation-access times, latent period and length of retention by whitefly vectors were similar to those of the original isolate reported in California in 1954. When growth chamber temperatures of 26, 32, and 37C were used in virus-vector studies, optimal acquisition and transmission occurred at 32C while temperatures of 37C were lethal to whitefly adults. Two additional virus-like agents were isolated from single and mixed infections of lettuce or melons, respectively. The virus-like agent from lettuce infected primarily members of the Chenopodiaceae, Compositae and Cucurbitaceae, and was whitefly but not mechanically transmissible. Long flexuous closterovirus-like rods of ∼10 x 1400-2000 nm were visualized in extracts prepared from plants inoculated with the lettuce isolate. The isolate was similar to the lettuce infectious yellow virus (LIYV) based upon host range, transmission characteristics and unique particle morphology. Both long flexuous rods like those associated with the lettuce isolate and GVL particles of 18 x 30 nm were associated with diseased melons. The host range of the GVL agent was confined to the Cucurbitaceae and Leguminosae and the agent was separated from the mixed infection by mechanical transmission to a non-LIYV host. The GVL-agent was distinct from previously described cucurbit viruses including the squash leaf curl virus, based upon host range and transmission characteristics and was tentatively designated as the watermelon curly mottle virus (WCMV).
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Air pollution and agricultural insect pests in urban and peri-urban areas of India : a case study of VaranasiDavies, Craig January 2001 (has links)
No description available.
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Resistance to conventional and novel insecticides in the glasshouse whitefly, Trialeurodes vaporariorumGorman, Kevin James January 2006 (has links)
The incidence, influencing factors and mechanisms of resistance to insecticides from a range of chemical groups were examined in UK and European populations of the glasshouse whitefly, Trialeurodes vaporariorum (Westwood). Toxicological assessments of populations from a range of plant production glasshouses and comparisons with the responses of a laboratory susceptible strain disclosed levels of resistance to pyrethroid, organophosphate, insect growth regulator (IGR) and neonicotinoid insecticides. Responses to conventional compounds indicated varying levels of resistance, potentially reflecting disparate usage between collection sites. All strains examined possessed resistance to the IGR, buprofezin; some populations were virtually immune to this commonly used control agent. Selection experiments demonstrated reciprocal crossresistance between buprofezin and a further IGR, teflubenzuron, both of which are frequently incorporated into integrated pest management (IPM) programmes for this species. Results for the leading neonicotinoid, imidacloprid, revealed resistance in both UK and European strains, representing the first documented cases of neonicotinoid resistance in this species worldwide, and the first in any insect species within the UK. The lethal effects of vapour emitted by applications of buprofezin and the anti-feedant effects of imidacloprid were demonstrated in T. vaporariorum for the first time. The potential consequences of these factors for both the control and selection of resistance were highlighted. Mechanistic studies using electrophoresis and kinetic spectrophotometer readings showed that neither non-specific esterases nor modified acetylcholinesterases were involved with resistance to either pyrethroid or specific organophosphate insecticides.
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The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistanceChen, Wenbo, Hasegawa, Daniel K., Kaur, Navneet, Kliot, Adi, Pinheiro, Patricia Valle, Luan, Junbo, Stensmyr, Marcus C., Zheng, Yi, Liu, Wenli, Sun, Honghe, Xu, Yimin, Luo, Yuan, Kruse, Angela, Yang, Xiaowei, Kontsedalov, Svetlana, Lebedev, Galina, Fisher, Tonja W., Nelson, David R., Hunter, Wayne B., Brown, Judith K., Jander, Georg, Cilia, Michelle, Douglas, Angela E., Ghanim, Murad, Simmons, Alvin M., Wintermantel, William M., Ling, Kai-Shu, Fei, Zhangjun 14 December 2016 (has links)
Background: The whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) is among the 100 worst invasive species in the world. As one of the most important crop pests and virus vectors, B. tabaci causes substantial crop losses and poses a serious threat to global food security. Results: We report the 615-Mb high-quality genome sequence of B. tabaci Middle East-Asia Minor 1 (MEAM1), the first genome sequence in the Aleyrodidae family, which contains 15,664 protein-coding genes. The B. tabaci genome is highly divergent from other sequenced hemipteran genomes, sharing no detectable synteny. A number of known detoxification gene families, including cytochrome P450s and UDP-glucuronosyltransferases, are significantly expanded in B. tabaci. Other expanded gene families, including cathepsins, large clusters of tandemly duplicated B. tabaci-specific genes, and phosphatidylethanolamine-binding proteins (PEBPs), were found to be associated with virus acquisition and transmission and/or insecticide resistance, likely contributing to the global invasiveness and efficient virus transmission capacity of B. tabaci. The presence of 142 horizontally transferred genes from bacteria or fungi in the B. tabaci genome, including genes encoding hopanoid/sterol synthesis and xenobiotic detoxification enzymes that are not present in other insects, offers novel insights into the unique biological adaptations of this insect such as polyphagy and insecticide resistance. Interestingly, two adjacent bacterial pantothenate biosynthesis genes, panB and panC, have been co-transferred into B. tabaci and fused into a single gene that has acquired introns during its evolution. Conclusions: The B. tabaci genome contains numerous genetic novelties, including expansions in gene families associated with insecticide resistance, detoxification and virus transmission, as well as numerous horizontally transferred genes from bacteria and fungi. We believe these novelties likely have shaped B. tabaci as a highly invasive polyphagous crop pest and efficient vector of plant viruses. The genome serves as a reference for resolving the B. tabaci cryptic species complex, understanding fundamental biological novelties, and providing valuable genetic information to assist the development of novel strategies for controlling whiteflies and the viruses they transmit.
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