by Kong Lai Ping, Ada. / Thesis (M.Phil.)--Chinese University of Hong Kong, 1997. / Includes bibliographical references (leaves 171-189). / ACKNOWLEDGEMENTS --- p.i / ABBREVIATIONS --- p.ii / ABSTRACT --- p.v / TABLE OF CONTENTS --- p.ix / Chapter CHAPTER 1: --- GENERAL INTRODUCTION / Chapter 1.1 --- An Overview on Hematopoiesis --- p.1 / Chapter 1.1.1 --- Development of Hematopoietic Stem Cells and Sites of Hematopoiesis --- p.1 / Chapter 1.1.2 --- Role of Cytokines in the Control of Hematopoiesis --- p.3 / Chapter 1.2 --- Leukemia and Cell Differentiation --- p.5 / Chapter 1.2.1 --- Leukemia as Abnormalities in Hematopoietic Cell Development --- p.5 / Chapter 1.2.2 --- Classification and Etiology of Leukemia --- p.6 / Chapter 1.2.3 --- Current Modalities for the Treatment of Leukemia --- p.9 / Chapter 1.2.4 --- Leukemia Cell Lines as In Vitro Models for the Study of Myeloid Leukemia --- p.10 / Chapter 1.2.5 --- Cytokines as Inducers of Myeloid Leukemia Cell Differentiation --- p.12 / Chapter 1.2.6 --- The Murine Myeloid Leukemia Cell Line (WEHI- 3B JCS) as an Experimental Cell Model --- p.13 / Chapter 1.3 --- Flavonoids: Properties and Biological Activities --- p.15 / Chapter 1.3.1 --- Chemical Structure and Classification of Flavonoids --- p.15 / Chapter 1.3.2 --- Occurrence and Distribution of Flavonoids --- p.16 / Chapter 1.3.3 --- Biological Properties and Action Mechanisms of Flavonoids --- p.17 / Chapter 1.3.4 --- Effects of Flavonoids on Leukemia --- p.20 / Chapter 1.4 --- Aims and Scopes of This Investigation --- p.23 / Chapter CHAPTER 2: --- MATERIALS AND METHODS / Chapter 2.1 --- Materials --- p.26 / Chapter 2.1.1 --- Cell Lines --- p.26 / Chapter 2.1.2. --- Mice --- p.28 / Chapter 2.1.3 --- Flavonoids --- p.28 / Chapter 2.1.4 --- Recombinant Cytokines --- p.30 / Chapter 2.1.5. --- Physiological Differentiation Inducers ´ؤ Vitamin Analogs --- p.31 / Chapter 2.1.6 --- Monoclonal Antibodies --- p.31 / Chapter 2.1.7 --- "Buffers, Culture Medium and Other Reagents" --- p.33 / Chapter 2.1.8 --- Oligonucleotide Primers and Internal Probes --- p.36 / Chapter 2.1.9 --- Reagents for Cytokine Gene Expression Study --- p.38 / Chapter 2.2 --- Methods --- p.44 / Chapter 2.2.1 --- Culture of Tumor Cell Lines --- p.44 / Chapter 2.2.2 --- Determination of Cell Growth and Proliferation --- p.45 / Chapter 2.2.3 --- Colony Assay --- p.46 / Chapter 2.2.4 --- In vivo Tumorigenicity Assay --- p.46 / Chapter 2.2.5 --- Induction of Leukemic Cell Differentiation --- p.47 / Chapter 2.2.6 --- Cell Morphological Study --- p.47 / Chapter 2.2.7 --- Assessment of Differentiation Associated Characteristics --- p.48 / Chapter 2.2.7.1 --- Nitroblue Tetrazolium (NBT) Reduction Assay --- p.48 / Chapter 2.2.7.2 --- Assay of Plastic Adherence --- p.48 / Chapter 2.2.8 --- Flow Cytometric Analysis --- p.49 / Chapter 2.2.8.1 --- Surface Antigen Immunophenotyping --- p.49 / Chapter 2.2.8.2 --- Assay of Non-specific Esterase Activity --- p.50 / Chapter 2.2.8.3 --- Assay of Phagocytic Activity --- p.50 / Chapter 2.2.8.4 --- Assay of Endocytic Activity --- p.51 / Chapter 2.2.8.5 --- Cell Cycle/DNA Content Evaluation --- p.52 / Chapter 2.2.9 --- Gene Expression Analysis --- p.53 / Chapter 2.2.9.1 --- Cell Lysate Preparation --- p.53 / Chapter 2.2.9.2 --- Total RNA Isolation by cesium chloride isopycnic gradient --- p.53 / Chapter 2.2.9.3 --- Reverse Transcription --- p.54 / Chapter 2.2.9.4 --- Polymerase Chain Reaction (PCR) --- p.55 / Chapter 2.2.9.5 --- Agarose Gel Electrophoresis --- p.56 / Chapter 2.2.9.6 --- DIG 3，End Labeling of Oligonucleotide Probes --- p.57 / Chapter 2.2.9.7 --- Dot Blot Hybridization --- p.57 / Chapter 2.2.9.8 --- DIG Chemiluminescent Detection --- p.58 / Chapter 2.2.10 --- DNA Fragmentation Analysis --- p.59 / Chapter 2.2.11 --- Statistical Analysis --- p.60 / Chapter CHAPTER 3: --- EFFECTS OF FLAVONOIDS ON THE PROLIFERATION AND APOPTOSIS OF MYELOID LEUKEMIA CELLS / Chapter 3.1 --- Introduction --- p.61 / Chapter 3.2 --- Results --- p.63 / Chapter 3.2.1 --- Growth-Inhibitory Effects of Flavone on Murine Myeloid Leukemia JCS Cells --- p.63 / Chapter 3.2.2 --- Cytotoxic Effects of Flavone on Murine Lymphocytes and Myeloid Leukemia JCS Cells --- p.67 / Chapter 3.2.3 --- Effects of Different Flavonoids on the Proliferation of Leukemia JCS Cells --- p.70 / Chapter 3.2.4 --- Anti-proliferative Effect of Flavonoids on Different Tumor Cell Lines --- p.74 / Chapter 3.2.5 --- Effects of Flavone and Flavonol on the Cell Cycle Kinetics of JCS Cells --- p.86 / Chapter 3.2.6 --- Induction of DNA Fragmentation of JCS cells by Flavone --- p.89 / Chapter 3.2.7 --- Effect of Flavone on the Clonogenicity of JCS Cells In Vitro and Tumorigenicity In Vivo --- p.92 / Chapter 3.3 --- Discussion --- p.94 / Chapter CHAPTER 4: --- EFFECTS OF FLAVONOIDS ON THE DIFFERENTIATION OF MURINE MYELOID LEUKEMIA JCS CELLS / Chapter 4.1 --- Introduction --- p.98 / Chapter 4.2 --- Results --- p.100 / Chapter 4.2.1 --- Morphological Changes in Flavonoid-Treated JCS Cells --- p.100 / Chapter 4.2.2 --- Induction of Plastic Adherence in Flavonoid- Treated JCS Cells --- p.106 / Chapter 4.2.3 --- Surface Antigen Immunophenotyping of Differentiating JCS Cells --- p.106 / Chapter 4.2.4 --- NBT-Reducing Activity of Flavonoid-Treated JCS Cells --- p.114 / Chapter 4.2.5 --- Non-specific Esterase Activity of Flavonoid- Treated JCS Cells --- p.115 / Chapter 4.2.6 --- Endocytic Activity of Flavonoid-Treated JCS Cells --- p.116 / Chapter 4.2.7 --- Phagocytic Activity of Flavonoid-Treated JCS Cells --- p.117 / Chapter 4.3 --- Discussion --- p.118 / Chapter CHAPTER 5: --- MECHANISTIC STUDIES ON THE ANTI- PROLIFERATIVE AND DIFFERENTIAION-INDUCING ACTIVITIES OF FLAVONE ON MURINE MYELOID LEUKEMIA JCS CELLS / Chapter 5.1 --- Introduction --- p.122 / Chapter 5.2 --- Results --- p.125 / Chapter 5.2.1 --- Combinations of Flavone with Physiological Differentiation Inducers on the Proliferation and Differentiation of JCS Cells --- p.125 / Chapter 5.2.1.1 --- Modulatory Effects of Flavone and All-Trans Retinoic Acid (ATRA) on the Proliferation and Differentiation of JCS Cells --- p.125 / Chapter 5.2.1.2 --- "Modulatory Effects of Flavone and 1,25- dihydroxyvitamin D3 on the Proliferation and Differentiation of JCS Cells" --- p.130 / Chapter 5.2.2 --- Combinations of Flavone and Cytokines on the Proliferation and Differentiation of JCS Cells --- p.134 / Chapter 5.2.2.1 --- Modulatory Effects of Flavone and rmlFN-γ on the Proliferation and Differentiation of JCS Cells --- p.134 / Chapter 5.2.2.2 --- Synergistic Effects of Flavone and rmIL-1 on the Proliferation and Differentiation of JCS Cells --- p.137 / Chapter 5.2.3 --- Modulation of Cytokine Gene Expressionin Flavone-Treated JCS Cells --- p.144 / Chapter 5.3 --- Discussion --- p.159 / Chapter CHAPTER 6: --- CONCLUSIONS AND FUTURE PERSPECTIVES --- p.165 / REFERENCES --- p.171

Within the past 70 years since the discovery of 5-methylcytosine, we have acquired considerable knowledge about genomic DNA methylation patterns, the dynamics of DNA methylation throughout development, and the enzymatic machinery that establishes and perpetuates genomic methylation patterns. Nonetheless, in the field of epigenetics major questions remain open about the mechanisms of spatiotemporal control that exist to ensure the fidelity of methylation patterns. This thesis aims to decipher the regulatory logic and upstream pathways influencing one of the DNA methyltransferases by leveraging the diverse resources of molecular genetics, biochemistry, and structural biology. The primary subject of my research, DNA methyltransferase 1 (DNMT1), is crucial for maintaining genomic methylation patterns upon DNA replication and cell division. In addition to its C-terminal catalytic domain, mammalian DNMT1 harbors several N-terminal domains of unknown function: a succession of seven glycine-lysine (GK) repeats, resembling histone tails, and two Bromo-Adjacent Homology (BAH) domains that are absent from bacterial DNA methyltransferases. The work I present in this thesis characterizes the role of these hitherto enigmatic domains in regulating DNMT1 activity. In my studies, I found that mutation of the (GK) repeats motif leads to de novo methylation by DNMT1 specifically at paternally imprinted genes. Conventionally, de novo methylation is thought to be undertaken by complete different enzymes, DNMT3A and DNMT3B, whereas DNMT1 is limited to perpetuating the patterns these other methyltransferases had set down. Recombinant DNMT1 had been previously shown to efficiently methylate unmethylated DNA substrate in vitro, but this is the first time its de novo methyltransferase capability has been observed in vivo. Based on these data, I propose a new model in which DNMT1 is the enzyme responsible for laying down de novo methylation patterns at paternally imprinted genes in the male germline, explaining the previously observed non-essential role of other DNA methyltransferases in the establishment of paternal imprints. Furthermore, I demonstrated that acetylation of the (GK) repeats motif inhibits this de novo methyltransferase activity of DNMT1, making this particular motif an essential regulatory platform for controlling the diverse in vivo functions of the enzyme. Though the (GK) repeats motif had previously been proposed to regulate the stability of DNMT1 protein through its interaction with the deubiquitinase USP7, I tested the biological relevance of this interaction and found that USP7 deletion does not alter DNMT1 protein levels. In fact, USP7 appears to play no part in regulating maintenance DNA methylation, as I present evidence that USP7 localization to replication foci is entirely independent of DNMT1. Finally, I demonstrated that the tandem BAH domains of DNMT1 are required for its maintenance methyltransferase activity as they are involved in targeting the enzyme to replication foci during S phase. Based on biochemical data supporting an interaction between DNMT1's BAH1 domain and histones, I propose that this targeting could occur through BAH1's recognition of specific histone modifications, thus providing a potential mechanistic link between maintenance DNA methylation and chromatin markings. This thesis identifies DNMT1 as a novel de novo methyltransferase in vivo and also characterizes the regulatory functions of the enzyme's BAH domains and the (GK) repeats. These results elucidate the multiple regulatory mechanisms within the DNMT1 molecule itself that control its functions in mammalian cells, thereby providing critical insights as to how the DNA methylation landscape takes shape and yielding surprising revelations about the parts that well-studied proteins have to play in this process.

Title: Live-cell tracking in time-lapse sequences Author: Tomáš Zámečník Department: Department of Software and Computer Science Education Supervisor: RNDr. Michal Šorel Ph.D., Oddělení zpracování obrazu ÚTIA AV ČR Abstract: This diploma thesis deals with methods of tracking particles in image sequences. It's goal is to design and implement a complete system for tracking of live cells, their motion and division. The thesis uses conclusions of published scientific papers, studies their application and analyzes possibilities for their mo- difications or improvement. As a result, there are two applications. First of them is a demonstrational pro- gram, provided as an attachment of this thesis. Second implementation is a mo- dule of commercial software NIS-Elements, by Laboratory Imaging, Ltd., which is used by both scientific and commercial institutions in the whole world. Keywords: cell tracking, particle tracking, cell division 1

FtsZ é homóloga de tubulina, presente em quase todas as bactérias, que se autoassocia em filamentos que formam uma estrutura chamada anel Z dentro das células. O anel Z quando formado recruta de um macrocomplexo proteico chamado divisomo, que é responsável pela síntese do septo de divisão, formando duas células filhas. Diversos moduladores se ligam diretamente a FtsZ regulam sua polimerização, controlando o momento e o local onde o anel Z é formado. MciZ é um peptídeo de 40 aminoácidos expresso durante a esporulação de Bacillus subtilis e inibe a formação do do anel Z na célula mãe. O objetivo do presente trabalho foi estudar a interação entre as proteínas FtsZ e MciZ e investigar os mecanismos envolvidos na inibição da polimerização de FtsZ por MciZ. Através de uma triagem genética, usando uma biblioteca de mutantes de ftsZ, identificamos treze mutações em ftsZ que conferiram resistência à superexpressão de MciZ in vivo. Sete delas eram capazes de crescer na presença e na ausência da superexpressão de MciZ e as outras seis se mostraram dependentes da superexpressão de MciZ. A partir da coexpressão e copurificação do complexo FtsZ:MciZ, observamos que todas as proteínas mutantes ainda continuavam interagindo com MciZ in vitro. O Kd estimado para a interação entre as proteínas foi de 150±50nM, e mostrou-se que MciZ não se liga nem ao CTP (C-Terminal Peptide) de FtsZ, nem compete com GTP para a ligação no mesmo sítio. Usando construções truncadas de MciZ, determinou-se que o N-terminal da proteína (resíduos 1 ao 27) é suficiente para inibição. A partir das estruturas tridimensionais de MciZ (RMN) e do complexo FtsZ:MciZ (cristalografia de raios x), determinou-se que MciZ é um peptídeo desenovelado, que assume uma estrutura terciária ao interagir através da sua α-hélice H2 e folha-β B2 com a α-hélice H10 e a folha-β S9 de FtsZ. MciZ mostrou-se capaz de reduzir o tamanho dos protofilamentos de FtsZ de forma subestequiométrica, gerando fragmentos menores de filamentos. Proporções de MciZ:FtsZ de 1:10 foram suficientes para extinguir completamente o anel Z, confirmando a inibição subestequiométrica também in vivo. A conservação da inibição da fusão FtsZ-MciZ e a cinética de despolimerização de FtsZ induzida por MciZ provaram que MciZ não é um simples sequestrador. Marcações fluorescentes de MciZ sugeriram que o peptídeo é capaz de interagir com o anel Z in vivo, e também decorar feixes de FtsZ in vitro, formando focos localizados frequentemente na ponta dos filamentos. Cossedimentações com polímeros de FtsZ mostraram a presença de MciZ ou da fusão FtsZ-MciZ. Apesar de MciZ induzir o aumento da atividade GTPáscia específica de FtsZ, a ausência de hidrólise de GTP não eliminou o efeito subestequiométrico de MciZ. Nossos resultados em conjunto mostram que MciZ é um capeador dos filamentos de FtsZ, bloqueando a elongação pela ponta menos e bloqueando o anelamento entre protofilamentos / FtsZ is a tubulin-like protein present in most bacteria, that self-assembles into filaments forming a structure known as Z-ring in the cells. Following formation, the Z- ring recruits a protein macrocomplex, the divisome, which is responsible by the division septum synthesis, resulting in two daughter cells. Many modulators interact directly to FtsZ, regulating its polymerization and controlling the time and place of the Z-ring formation. MciZ is a 40-amino-acid peptide that is expressed during sporulation in Bacillus subtilis and inhibits the formation of the Z-ring in the mother-cell. The aim of this work was to study the interaction between FtsZ and MciZ proteins, and to investigate the mechanisms involved in FtsZ inhibition by MciZ. Applying a genetic screening, using an ftsZ mutant library, we identified 13 mutations on ftsZ that conferred resistance to MciZ overexpression in vivo. Seven of them were able to grow either in the presence or absence of MciZ overexpression, and the other six showed to be dependent on it. With the co-expression and co-purification of the FtsZ:MciZ complex, we observed all mutant proteins still interact with MciZ in vitro. Estimated Kd for the interaction was 150±50nM, and it was demonstrated that MciZ does not bind to FtsZ CTP (C-Terminal Peptide), nor does it compete with GTP for the same binding site. Using truncated versions of MciZ, it was determined that its N-terminal (residues 1 to 27) is sufficient for the inhibition. Based on the tridimensional structure of MciZ (NMR) and of the FtsZ:MciZ complex (x- ray crystallography), it was determined that MciZ is an unstructured peptide that assumes a tertiary structure by interacting with FtsZ α-helix H10 and β-sheet S9 through its α-helix H2 and β-sheet B2. MciZ was able to reduce the size of FtsZ protofilaments in a substoichiometric manner, generating smaller fragmented filaments. 1:10 ratios of MciZ:FtsZ were sufficient to completely extinguish the Z-ring, thus confirming the substoichiometric inhibition in vivo as well. The inhibition of FtsZ polymerization by the FtsZ-MciZ fusion and the FtsZ depolymerization kinetics induced by MciZ proved that MciZ is not a simple sequesterer. Fluorescent dyeing of MciZ suggests the peptide is able to interact with the Z-ring in vivo, as well as decorate FtsZ bundles in vivo, forming localized spots frequently at the filaments\' ends. Co- sedimentations with FtsZ polymers showed the presence of MciZ or of the FtsZ-MciZ fusion. Despite MciZ-induced increase in specific GTPase activity of FtsZ, the lack of GTP hydrolysis did not eliminate the substoichiometric effect of MciZ. Combined, our results show that MciZ is an FtsZ filament capper, blocking elongation at the minus end and blocking the annealing between protofilaments

FtsZ é homóloga de tubulina, presente em quase todas as bactérias, que se autoassocia em filamentos que formam uma estrutura chamada anel Z dentro das células. O anel Z quando formado recruta de um macrocomplexo proteico chamado divisomo, que é responsável pela síntese do septo de divisão, formando duas células filhas. Diversos moduladores se ligam diretamente a FtsZ regulam sua polimerização, controlando o momento e o local onde o anel Z é formado. MciZ é um peptídeo de 40 aminoácidos expresso durante a esporulação de Bacillus subtilis e inibe a formação do do anel Z na célula mãe. O objetivo do presente trabalho foi estudar a interação entre as proteínas FtsZ e MciZ e investigar os mecanismos envolvidos na inibição da polimerização de FtsZ por MciZ. Através de uma triagem genética, usando uma biblioteca de mutantes de ftsZ, identificamos treze mutações em ftsZ que conferiram resistência à superexpressão de MciZ in vivo. Sete delas eram capazes de crescer na presença e na ausência da superexpressão de MciZ e as outras seis se mostraram dependentes da superexpressão de MciZ. A partir da coexpressão e copurificação do complexo FtsZ:MciZ, observamos que todas as proteínas mutantes ainda continuavam interagindo com MciZ in vitro. O Kd estimado para a interação entre as proteínas foi de 150±50nM, e mostrou-se que MciZ não se liga nem ao CTP (C-Terminal Peptide) de FtsZ, nem compete com GTP para a ligação no mesmo sítio. Usando construções truncadas de MciZ, determinou-se que o N-terminal da proteína (resíduos 1 ao 27) é suficiente para inibição. A partir das estruturas tridimensionais de MciZ (RMN) e do complexo FtsZ:MciZ (cristalografia de raios x), determinou-se que MciZ é um peptídeo desenovelado, que assume uma estrutura terciária ao interagir através da sua α-hélice H2 e folha-β B2 com a α-hélice H10 e a folha-β S9 de FtsZ. MciZ mostrou-se capaz de reduzir o tamanho dos protofilamentos de FtsZ de forma subestequiométrica, gerando fragmentos menores de filamentos. Proporções de MciZ:FtsZ de 1:10 foram suficientes para extinguir completamente o anel Z, confirmando a inibição subestequiométrica também in vivo. A conservação da inibição da fusão FtsZ-MciZ e a cinética de despolimerização de FtsZ induzida por MciZ provaram que MciZ não é um simples sequestrador. Marcações fluorescentes de MciZ sugeriram que o peptídeo é capaz de interagir com o anel Z in vivo, e também decorar feixes de FtsZ in vitro, formando focos localizados frequentemente na ponta dos filamentos. Cossedimentações com polímeros de FtsZ mostraram a presença de MciZ ou da fusão FtsZ-MciZ. Apesar de MciZ induzir o aumento da atividade GTPáscia específica de FtsZ, a ausência de hidrólise de GTP não eliminou o efeito subestequiométrico de MciZ. Nossos resultados em conjunto mostram que MciZ é um capeador dos filamentos de FtsZ, bloqueando a elongação pela ponta menos e bloqueando o anelamento entre protofilamentos / FtsZ is a tubulin-like protein present in most bacteria, that self-assembles into filaments forming a structure known as Z-ring in the cells. Following formation, the Z- ring recruits a protein macrocomplex, the divisome, which is responsible by the division septum synthesis, resulting in two daughter cells. Many modulators interact directly to FtsZ, regulating its polymerization and controlling the time and place of the Z-ring formation. MciZ is a 40-amino-acid peptide that is expressed during sporulation in Bacillus subtilis and inhibits the formation of the Z-ring in the mother-cell. The aim of this work was to study the interaction between FtsZ and MciZ proteins, and to investigate the mechanisms involved in FtsZ inhibition by MciZ. Applying a genetic screening, using an ftsZ mutant library, we identified 13 mutations on ftsZ that conferred resistance to MciZ overexpression in vivo. Seven of them were able to grow either in the presence or absence of MciZ overexpression, and the other six showed to be dependent on it. With the co-expression and co-purification of the FtsZ:MciZ complex, we observed all mutant proteins still interact with MciZ in vitro. Estimated Kd for the interaction was 150±50nM, and it was demonstrated that MciZ does not bind to FtsZ CTP (C-Terminal Peptide), nor does it compete with GTP for the same binding site. Using truncated versions of MciZ, it was determined that its N-terminal (residues 1 to 27) is sufficient for the inhibition. Based on the tridimensional structure of MciZ (NMR) and of the FtsZ:MciZ complex (x- ray crystallography), it was determined that MciZ is an unstructured peptide that assumes a tertiary structure by interacting with FtsZ α-helix H10 and β-sheet S9 through its α-helix H2 and β-sheet B2. MciZ was able to reduce the size of FtsZ protofilaments in a substoichiometric manner, generating smaller fragmented filaments. 1:10 ratios of MciZ:FtsZ were sufficient to completely extinguish the Z-ring, thus confirming the substoichiometric inhibition in vivo as well. The inhibition of FtsZ polymerization by the FtsZ-MciZ fusion and the FtsZ depolymerization kinetics induced by MciZ proved that MciZ is not a simple sequesterer. Fluorescent dyeing of MciZ suggests the peptide is able to interact with the Z-ring in vivo, as well as decorate FtsZ bundles in vivo, forming localized spots frequently at the filaments\' ends. Co- sedimentations with FtsZ polymers showed the presence of MciZ or of the FtsZ-MciZ fusion. Despite MciZ-induced increase in specific GTPase activity of FtsZ, the lack of GTP hydrolysis did not eliminate the substoichiometric effect of MciZ. Combined, our results show that MciZ is an FtsZ filament capper, blocking elongation at the minus end and blocking the annealing between protofilaments

Human β-catenin is a dual-functioned protein responsible for regulating cell-cell adhesion and gene transcription. To activate gene transcription, β-catenin must be shuttled into the nucleus where it interacts with various co-activators to activates gene transcription. Various studies have identified proteins that bind to specific amino acid sequences in β-catenin for proper gene transcription regulation. Compared to the single beta-catenin in most animals, C. elegans surprisingly contains four β-catenins. Though structurally similar, these beta-catenins became distinct during nematode evolution, resulting in four β-catenins that differ in functions. SYS-1 is one such β-catenin that loses its adhesion ability and is specialized in activating transcription of genes in the nucleus. Across different animals, β-catenin shares similar amino acid sequences and structure. SYS-1, while it shares the similar structure to other β-catenins, is the most divergent C. elegans beta-catenin when comparing amino acid sequences. In addition, while SYS-1 interacts with homologs of proteins that bind to and regulate human β-catenin, the binding sites of those proteins to SYS-1 is unknown. Here, we identify novel sites for beta-catenin’s gene transcription role within SYS-1 that greatly differed from human β-catenin. We also identify a novel mechanism for beta-catenin nuclear import, which is still largely unknown in any system, by identifying a candidate importer that associates with SYS-1 is required for SYS-1 dependent cell fate. In summary, though SYS-1 has a well-conserved function dictating cell fate in response to developmental signals, it has evolved novel regulatory, functional and localization mechanisms and therefore serves as a model for the plasticity nuclear importer that helps shuttle SYS-1 into the nucleus identified specific regions in SYS-1 that is involved in activating transcription which will result in cell fate changes.

Chromosome alignment is highly conserved in all eukaryotic cell divisions. Microtubule (MT) -based forces generated by the mitotic spindle are integral for proper chromosome alignment and equal chromosome segregation. The kinetochore is a multi-subunit protein complex that assembles on centromeric regions of chromosomes. Kinetochores tether chromosomes to MTs (K fibers) that emanate from opposite poles, in a process called biorientation. This linkage translates K fiber dynamics into chromosome movements during alignment and segregation. Stable, high-affinity kinetochore attachments promote spindle assembly checkpoint (SAC) silencing, which is active when unattached kinetochores are present. During chromosome alignment, 1) K fiber plus-end dynamics decrease, confining chromosome movements near the spindle equator, and 2) electrostatic interactions between kinetochore proteins and MTs increase. Chromosome segregation occurs as soon as all chromosomes are stably attached to microtubules and the SAC has been silenced. SAC silencing and chromosome alignment are temporally coordinated during normal divisions, implying that the mechanisms regulating K fiber dynamics and kinetochore affinity must be linked. Interestingly, HeLa cells depleted of a kinesin-8 motor Kif18A, known for its role in promoting chromosome alignment, display a SAC-dependent mitotic delay due to kinetochore-MT attachment defects. This is puzzling, as Kif18A's function in chromosome alignment is to suppress MT growth by stably associating with MT plus-ends. Whether Kif18A is required for attachment in all cells and how it promotes kinetochore microtubule linkages are not understood. The work presented in this dissertation supports a model in which Kif18A functions as a molecular link that coordinates chromosome alignment and anaphase onset. We find that Kif18A is required to stabilize kinetochore-MT attachments during mammalian germline development, as germline precursor cells in Kif18A mutant mice are unable to divide during embryogenesis due to an active SAC. However, while all cell types require functional Kif18A for chromosome alignment, mouse primary somatic cells can still divide with normal timing. This finding indicates a cell-type specific dependence on Kif18A for stabilizing kinetochore-MT attachments, and provides evidence that this function might be separate from Kif18A's known role in chromosome alignment. Consistent with this idea, we find that an evolutionarily conserved binding motif for protein phosphatase 1 (PP1) is required for Kif18A's novel role in regulating kinetochore microtubule attachments. Kif18A-PP1 interaction is required for Kif18A-mediated dephosphorylation of the kinetochore protein Hec1, which enhances attachment. However, Kif18A's interaction with PP1 is dispensable for chromosome alignment. Thus, point mutations that disrupt PP1 binding separate Kif18A's role in stabilizing kinetochore attachments from its function in promoting chromosome alignment. Additionally, through structure function studies of the motor domain, we identified a long surface loop (Loop2) that is required for Kif18A's unique MT plus-end binding activity, which is essential for its function in confining chromosome movements. Taken together, we find that Kif18A is molecularly tuned to provide temporal control of chromosome alignment and anaphase entry.

<p>Cell division in the Gram-positive bacterium <i>Streptomyces coelicolor</i> starts with the assembly of the tubulin homologue FtsZ into a cytokinetic ring (the Z ring) at the site of septation. In stark contrast to the binary fission of most bacteria, the syncytial hyphal cells of <i>S. coelicolor</i> exploit two types of cell division with strikingly different outcomes depending on the developmental stage. </p><p>The main goal of this study has been to identify developmental mechanisms that modulate this differential performance of the basic cell division machinery.</p><p>By isolation and characterization of a non-sporulating <i>ftsZ</i> mutant, we demonstrated that the requirements for Z-ring formation differ between the two types of septation. The <i>ftsZ17</i>(Spo) mutation abolished septation without overtly affecting vegetative growth. This mutant was defective in the assembly of FtsZ into regularly spaced Z rings in sporogenic hyphae, suggesting that the assembly of Z rings is developmentally controlled during sporulation.</p><p>An FtsZ-EGFP translational fusion was constructed and used to visualize the progression of FtsZ ring assembly in vivo. This revealed that polymerization of FtsZ occurred throughout the sporogenic cell, with no evidence for pre-determined nucleation sites, and that the placement of multiple Z rings is a dynamic process and involves remodeling of spiral-shaped FtsZ intermediates into regularly spaced rings. </p><p>The dynamics of the multiple Z-rings assembly during sporulation was perturbed by the action of the protein CrgA, which is important for coordinating growth and cell division in sporogenic hyphae. CrgA was also found to affect the timing of <i>ftsZ</i> expression and the turnover of the FtsZ protein. </p><p><i>S. coelicolor</i> is the main genetic model of the streptomycetes, which are major industrial antibiotic producers. The control of cell division in these organisms differs from that of other bacteria like <i>Escherichia coli</i>. Thus, it is of fundamental importance to clarify how the streptomycetes reproduce themselves. </p>

Cell division in the Gram-positive bacterium Streptomyces coelicolor starts with the assembly of the tubulin homologue FtsZ into a cytokinetic ring (the Z ring) at the site of septation. In stark contrast to the binary fission of most bacteria, the syncytial hyphal cells of S. coelicolor exploit two types of cell division with strikingly different outcomes depending on the developmental stage. The main goal of this study has been to identify developmental mechanisms that modulate this differential performance of the basic cell division machinery. By isolation and characterization of a non-sporulating ftsZ mutant, we demonstrated that the requirements for Z-ring formation differ between the two types of septation. The ftsZ17(Spo) mutation abolished septation without overtly affecting vegetative growth. This mutant was defective in the assembly of FtsZ into regularly spaced Z rings in sporogenic hyphae, suggesting that the assembly of Z rings is developmentally controlled during sporulation. An FtsZ-EGFP translational fusion was constructed and used to visualize the progression of FtsZ ring assembly in vivo. This revealed that polymerization of FtsZ occurred throughout the sporogenic cell, with no evidence for pre-determined nucleation sites, and that the placement of multiple Z rings is a dynamic process and involves remodeling of spiral-shaped FtsZ intermediates into regularly spaced rings. The dynamics of the multiple Z-rings assembly during sporulation was perturbed by the action of the protein CrgA, which is important for coordinating growth and cell division in sporogenic hyphae. CrgA was also found to affect the timing of ftsZ expression and the turnover of the FtsZ protein. S. coelicolor is the main genetic model of the streptomycetes, which are major industrial antibiotic producers. The control of cell division in these organisms differs from that of other bacteria like Escherichia coli. Thus, it is of fundamental importance to clarify how the streptomycetes reproduce themselves.

Controlling fates of stem and progenitor cells is one of the central goals of regenerative medicine. However, conventional cell enumeration methods are unable to distinguish between the effects of cell death, proliferation, and differentiation through molecular interventions on the output of specific cell types. We have devised a strategy to simultaneously obtain proliferation and death rates in cultures of highly purified erythroid progenitors. The approach is based on combining cell-surface marker analysis, cell-division tracking and 7-amino-actinomycin-D staining to monitor cell death. A compartment model of cell proliferation was developed to evaluate cell generation-specific length of cell-division, rates of entry into division, and cell death, from the experimental cell-division tracking data obtained following stimulation with erythropoietin (EPO) and Stem cell factor (SCF). The results indicated that EPO and SCF, either as single factor or in combination, differentially affect the rates of differentiation, length of cell-division and rates of death.