Master of Science / Department of Animal Sciences and Industry / Jim L. Nelssen / Piglet birth weight (BtW) is inextricably associated with preweaning survival. The non-linear antagonistic relationship between BtW and mortality risk is more severe in pigs <1.11 kg BtW than in pigs with BtW >1.11 kg. Thus, our research categorized fetal pigs as small (SM), median (MD), or large (LG) size depending on relative crown-rump length at d-60 gestation or BW within litter at d-95 gestation to evaluate differences in fetal myogenesis and development. At both d-60 and d-95, brain weights did not differ but brain weight:liver weight ratio was larger (P<0.05) for SM compared MD and LG. Cross-sectional area of the Longissimus muscle increased with increasing fetal size so that LG and MD had larger (P<0.05) whole muscle cross-sectional areas than SM although number of primary and relative secondary muscle fibers and their respective cross-sectional areas did not differ. Day-60 mRNA abundance of both IGF-1 and IGF-2 in SM was greater (P<0.05) than in MD and LG. Fetal size had a marginally significant effect (P=0.103) on gene expression of IGF-2 receptor with expression least in LG. Small fetuses had greater (P<0.05) d-60 MyoD gene expression and d-95 serum IGF-1 levels than MD and LG. Two experiments were conducted to determine the effects of feeding low or high doses of chlortetracycline (CTC) and antibiotic alternatives (pharmacologic Zn, Cu, and essential oil), alone or in combination, on nursery pig growth performance. Pharmacologic Cu (125 ppm from CuSO[subscript]4), Zn (2,000-3,000 ppm from ZnO), or increasing CTC level (0-441 ppm) improved growth performance additively while Origanum essential oil (0.005%) elicited no benefits and decreased G:F. Interactive effects of supplemental Cu (125 ppm), Zn (150 ppm), and ractopamine HCl (10 ppm for 28 d) on finishing pig growth performance, carcass characteristics, and antimicrobial susceptibility of enteric bacteria was evaluated. Ractopamine increased (P<0.001) ADG, G:F, HCW, percentage carcass yield, loin depth, percent fat-free lean, and decreased (P=0.014) backfat. Copper and/or Zn did not improve ADG, ADFI, or carcass traits. Fecal E. coli and Enterococcus bacterial resistance to most antibiotics decreased (P<0.05) over time or was stable for those that had a low baseline percentage of resistance.

Doctor of Philosophy / Department of Animal Sciences and Industry / J. Ernest Minton / The three experiments described below offer support of immune function by the swine gastrointestinal epithelium. Experiment one evaluated mediators that regulate the movement of macrophages (macrophage migration inhibitory factor; MIF), neutrophils (interleukin 8; IL8), dendritic cells (CC chemokine ligand 20; CCL20) and epithelial remodeling (osteopontin; OPN) in pigs challenged with Salmonella enterica serovar Typhimurium (ST) or Choleraesuis (SC). The proximal ileum had greater IL8 expression than the distal ileum (P < 0.05), and ST increased CCL20 (P < 0.05). In vitro, MIF, IL8, CCL20 and OPN mRNA expression induced by lipopolysaccharide (LPS), ST or SC using pig jejunal epithelial cells (IPEC-J2) resulted in increased IL8 secretion, and increased IL8 and CCL20 mRNA by ST and SC (P < 0.05). Experiment two evaluated how Lactobacillus reuteri (LR) and Bacillus licheniformis (BL) differed from ST or SC in their ability to regulate, stimulate, or modify IL8, CCL20, and tumor necrosis factor α (TNFα) in IPEC-J2 cells. ST stimulated an increase in IL8 secretion, with increases in IL8 mRNA (P < 0.05). BL increased IL8 mRNA (P < 0.0001). CCL20 mRNA was upregulated by ST (P < 0.05) and BL (P < 0.05). Only ST increased TNFα mRNA (P < 0.05). Another objective evaluated whether pre-exposure of IPEC-J2 cells to LR or BL modified ST induced IL8 secretion. IL8 secretion was increased by ST (P < 0.0001), and reduced by LR (P < 0.05). Only the BL/ST co-treated wells blunted basolateral IL8 secretion (P < 0.0001). Experiment three characterized the swine CCL20 mRNA sequence and evaluated tissue expression. Cloning of CCL20 from the porcine jejunum predicted a 97 amino acid peptide. All healthy tissues expressed CCL20 mRNA. In animals challenged with Salmonella spp., SC increased spleen and liver CCL20 expression. The data demonstrate that invasive bacterial pathogens in the pig gastrointestinal tract trigger upregulation of selected proinflammatory mediators; Salmonella spp. elicited differing patterns of activation in vitro and in vivo; IPEC-J2 cells increased IL-8 secretion in response to ST and BL, but not LR, while ST stimulated secretion was inhibited basolaterally by BL pre-exposure; and numerous porcine tissues are prominent sources CCL20.

Master of Agribusiness / Department of Agricultural Economics / Ted C. Schroeder / Annual vaccination of the beef cow herd is a common management tool for most beef herd operations. However, no studies have established the minimal vaccination frequency needed to attain an acceptable herd production output with minimal financial inputs. The hypothesis of this study stated that the production output and profitability of the cow herd would not be decreased by vaccinating the cow herd at intervals of greater than one year. An animal's immune response to a vaccine or a direct challenge by a pathogen requires it to partition nutritional resources from other functioning biological systems within the body such as reproduction and lactation. According to the concept of diminishing returns, there is a point at which the cost of inputs (labor costs, vaccine costs and frequency of vaccination) does not result in corresponding levels of production output (measured by calf weaning weight, cow pregnancy rate and calf survivability). Thus, the objective of this thesis was to evaluate the effect of varying the interval of vaccination on cow reproductive productivity, calf productivity at weaning and herd profitability. It is important to note that this research study does not question the premises of vaccinating a cow herd or the effectiveness of the vaccines, but only investigates the time interval between vaccinations. This study consisted of approximately 1000 head of beef cattle divided between two ranch locations in south central South Dakota. Permanent and yearly production records were collected for each individual cow and calf for three production years 1998, 1999 and 2000. At each location cows were randomly assigned into four treatment groups:1) Group V0 – control or non-vaccinated, 2) Group V1 – vaccinated in 2000, 3) Group V2 – vaccinated in 1999 and 2000 and 4) Group V3 – vaccinated in 1998, 1999 and 2000. At the conclusion of this four year study, varying the interval of vaccinations did not decrease the production and the profitability of the treatment groups compared to the control group in the weaning weight and calf mortality models. However, in the pregnancy model conception rates were significantly reduced in 2 of the 3 treatment groups.

Master of Agribusiness / Department of Agricultural Economics / Michael D. Tokach / Lone Tree Farms, Inc. is a diversified agricultural enterprise located in Harrisonville, Missouri. Since operations began in 1962, the hog operation has been expanded to the present size of a 2500 sow farrow-to-wean operation. The results of the thesis research lead Lone Tree Farms believes that there are economic and efficiency reasons behind adding to the existing farrow-to-wean operation with a 2500 sow farrow-to-wean operation. The thesis confirms and reveals several points. First, the project takes between 9 months and a year to complete. Some of the inputs required are eight more personnel and an additional 90,000 bushel of feed grain per operating year. Approximately 3,000 gilts are utilized to stock the project and building costs of approximately $3.5 million dollars will be accrued. The total costs of developing the project will be approximately $4.25 to 4.5 million dollars before the first pig is sold (2007 US Dollars). Many risk factors affect the outcome of the project, including risk of high grain prices due to ethanol, labor needs, environmental issues, and manure utilization needs of the project. The spreadsheet model that was developed as part of this thesis reveals that low productivity of the sow herd is the greatest risk factor for the success of the project. Reducing pigs weaned per sow from 11.0 to 8.5 would lower projected return on equity from 32.7. to 7.6% and increase the cost to produce a weaned pig by $8.72/pig. A major change in both corn (over $2.50/bu) and soybean meal (over $200/ton) price would be required for feed cost to have a similar impact on the cost to produce a weaned pig. The start-up and initial production year pose the greatest challenges and risks. After that, production flows should reach more consistency and effectively lower the risk. The initial start-up capitalization of approximately 30% reduces exposure and liquidity risks. The timing of the project should be made when both input expenses and output prices (pig price) are able to be managed. Combined with good management which maximizes pigs/sow weaned, the project stands a very good chance of being considered successful.

Master of Agribusiness / Department of Agricultural Economics / Ted C. Schroeder / For the industry to be able to produce a higher performing and consistent quality product, evaluation of performance and information needs to be collected and available for producers to make more informed beef cattle production management decisions. In recent history, the cattle industry has taken on the complex job of maintaining and recording performance records through programs and efforts such as breed association data bases, and herd health data bases. The constant evaluation of performance and genetic records has supplied producers with data resulting in performance, maternal and carcass statistical records such as Expected Progeny Differences (EPDs). Additionally, developing technology is helping the industry through selection and decision tools such as Carcass DNA marker identification. This study evaluates how the selection tools of EPDs and DNA affect the value of Gelbvieh / Balancer bulls at auction. Data collected for this study is from various Gelbvieh / Balancer bull sales throughout Nebraska in the spring of 2008. Variables evaluated in the study were data and information provided to potential buyers before the auctions to be able to observe how this information affected the value of the purchased bull for each buyer. Variables evaluated were Igenity Profile Carcass DNA values of Ribeye Area, Marbling, and Tenderness. Additionally, Performance EPDs of Calving Ease Direct, Birth Weight, Weaning Weight, Yearling Weight, Ribeye Area, and Marbling were evaluated. The only actual measurement observed was Scrotal Circumference. The hedonic models developed for this study suggest that the selected bull data provided to potential buyers before sale are not the only significant determinants affecting price. Statistical measurements and technologies developing the industry are having a profound and positive effect on production and as selection tools however, are not the only potential variables affecting the value of a sire at auction. Other possible variables effecting auction value can also include evaluation of phenotype, pedigree, and buyer benefits. The data and variables evaluated in the study should still be used as valuable additions to other selection tools and observations when selecting a future beef sire.

Doctor of Philosophy / Department of Animal Sciences and Industry / Michael E. Dikeman / Sixty cull cows were utilized to investigate the effects of feeding a single or sequence of β-adrenergic agonists (β-AA) on performance, mRNA expression, carcass traits, economics, meat palatability, and ground beef color. Treatments included: 1) concentrate fed for 74 d (C); 2) concentrate fed for 49 d then supplemented with ractopamine-HCl for 25 d (RH); 3) concentrate fed for 51 d then supplemented with zilpaterol-HCl for 20 d (ZH); 4), concentrate fed for 26 d then supplemented with RH for 25 d followed by ZH for 20 d (RH + ZH). No differences existed among treatments for performance or carcass characteristics. However, cows supplemented with ZH (ZH and RH + ZH treatments) had increased LM areas (P = 0.18) compared to control and RH cows. Sequential feeding of RH followed by ZH had no influence on β2-adrenergic receptor (AR) mRNA expression. However, β2-AR mRNA was increased (P < 0.05) in the RH and ZH treatments when RH or ZH was supplemented during the last 20 to 25 d of feeding. Myosin heavy chain (MHC) Type IIa mRNA decreased (P < 0.05) from d 24 to 51 in all cows, while MHC-IIx increased (P < 0.05) in the ZH and RH + ZH treatments during ZH supplementation. No differences were observed in ground beef color shelf-life among treatments. Effects of β-AA supplementation on meat palatability varied among muscles. Infraspinatus steaks had improved (P < 0.05) WBSF values with β-AA supplementation. Psoas major steaks from the RH + ZH treatment were rated as more tender than steaks from all other treatments. Non-enhanced LM steaks from ZH supplemented cows had higher (P = 0.12) WBSF values along with decreased (P < 0.0001) percentages of degraded desmin compared to control and RH cows. Collagen solubility of the LM was increased with ZH supplementation compared to RH and control cows. Enhancement of steaks with 0.1 M calcium lactate improved LM tenderness of β-AA supplemented cows. Implanting and feeding cull cows for 74 d, regardless of β-AA supplementation, added value by transiting cows from a “cull” cow to “white” cow market.

Master of Science / Department of Grain Science and Industry / Keith C. Behnke / The effect of tracer particle size on the accuracy of measuring retention time inside the conditioner of a pellet mill was studied. Three experiments were conducted using tracers with different particle sizes. The control retention time was calculated using the hold-up capacity method, while retention times for treatments were calculated using the pulse-input method. In addition to the previously prepared tracers, crystalline salt and powder color dye were used as tracers in this study to represent small particle tracers. In experiment one, large, medium, and small tracers were used. The treatment with large particle size was closer to the control with differences around 1.5%. Conversely, using the tracer with small particle size resulted in larger differences, approximately 18%. Two tracers were used in experiment two, resulted in 33% difference between treatment and control using a small particle size tracer, and a 10% difference using a tracer with similar particle size to the main materials. A tracer similar in particle size to the materials flowing inside the conditioner was used in the third experiment in addition to the salt and dye. Statistical analyses for this experiment indicated that particle size affects the accuracy of retention time measurements. There was a significant difference (P<0.05) in the comparison between salt and red color dye in treatment two, while there was no significant difference (P>0.05) between them in treatment one (same particle size). Moreover, in another comparison of the differences between treatments and their related controls, there was significant difference (P<0.05). However, the P-value for the red dye comparison (0.0126) was higher than that of salt (0.0026), which adds density as another influential factor that affects retention time measurement.

Master of Science / Department of Agricultural Economics / Kevin C. Dhuyvetter / A Microsoft Excel based budget was developed to find the cost of becoming National Animal Identification Systems (NAIS) compliant in the U.S for beef cow-calf producers. This budget was turned into a stochastic budget by using different distributions for five key variables. From these distributions 10,000 observations were simulated using Latin Hypercube sampling. From the comprehensive budget, a second, more simple budget was constructed for obtaining NAIS cost. This Microsoft Excel based model gives beef cow-calf producers an estimate and a prediction interval associated with the estimated cost of adopting a cattle ID system that is compliant with the National Animal Identification Systems quickly and conveniently, requiring only six inputs. Both the comprehensive and the quick budget are available online. An Ordinary Least Squares regression was estimated using the simulated observations to find marginal effects associated with key variables. The driving factor of total cost per head was eID tag price for operations that tag and eID tag price and chute costs for non-tagging operations. For producers with five or less animals, it was cheaper to hire third parties to tag animals. From the sample data generated, smaller operations pay significantly more than larger operations on a per head basis, as the minimum cost was $2.08 for the larger operations and the maximum cost to small operations was $17.56. The estimated overall average cost per head for the cow/calf industry was $6.26, with a standard deviation of $4.12. Costs were on a per breeding female basis. The Excel spreadsheet budget and model can be downloaded at http://www.agmanager.info/ for producers who wish to estimate NAIS costs specific to their operations.

Master of Science / Department of Animal Sciences and Industry / Evan C. Titgemeyer / Two experiments analyzed effects of zilpaterol-HCl and nitrogen supplementation in the form of either dried distiller’s grains with solubles (DDGS) or urea fed to steers. In Experiment 1, steers were fed corn-based diets: control (CON; 10.2% CP), urea (UREA; 13.3% CP), or DDGS (14.9% CP). Nitrogen intake differed among treatments (99, 151, and 123 g/d for CON, DDGS, and UREA). Urea-N synthesis tended to be greater for DDGS (118 g/d) than for UREA (86 g/d), which tended to be greater than CON (52 g/d). Urinary urea-N excretion was greater ([italics]P[italics]<0.03) for DDGS (35.1 g/d) and UREA (28.6 g/d) than for CON (12.7 g/d). Gut entry of urea-N (GER) was numerically greatest for DDGS (83 g/d), intermediate for UREA (57 g/d), and least for CON (39 g/d). Urea-N returned to the ornithine cycle tended to be greater for DDGS (47 g/d) than for UREA (27 g/d) or CON (16 g/d). The percent of microbial N flow derived from recycled urea-N tended ([italics]P[italics]=0.10) to be greater for DDGS (35%) than for UREA (22%) or CON (17%). The percent of urea production captured by ruminal bacteria was greater ([italics]P[italics]<0.03) for CON (42%) than for DDGS (25%) or UREA (22%). Experiment 2 diets were identical to those used in Experiment 1. In addition, steers were also fed either 0 or 60 mg/d zilpaterol-HCl. Dietary CP was 9.6, 12.4, and 13.7% for CON, UREA, and DDGS, respectively. Zilpaterol increased ([italics]P[italics]<0.01) total DMI and N intake; however, zilpaterol did not affect urea entry rate ([italics]P[italics]=0.80) or GER ([italics]P[italics]=0.94). Urea entry rate and GER were numerically greater for DDGS than CON and UREA. In conclusion, zilpaterol did not influence urea entry rate or GER. This lack of response in the face of greater N intake was interpreted to suggest that zilpaterol may reduce urea production and GER at constant N intake.

Doctor of Philosophy / Department of Diagnostic Medicine/Pathobiology / Joel M. DeRouchey / Steven S. Dritz / A total of 9,979 pigs were used in 11 experiments to quantify production responses under field conditions in growing pigs to PCV2 vaccination, biofuel co-products and dietary supplemental enzymes. Experiments 1 and 2 were conducted to determine the efficacy of a commercial 2-dose Porcine Circovirus Type 2 (PCV2) vaccine. Growth performance and mortality (P < 0.05) of vaccinated pigs improved compared to non-vaccinated pigs in both experiments with the vaccine causing a greater increase in ADG in vaccinated barrows than vaccinated gilts in Exp. 2. Experiment 3 compared the efficacy of 1-dose and 2-dose commercial PCV2 vaccines, where vaccinated pigs had greater ADG (P < 0.05) than vaccinated pigs regardless of vaccine type. The 2-dose group was heavier (P < 0.05) than the control group while the 1-dose group was intermediate. Therefore, PCV2 vaccines were efficacious under field conditions. Experiments 4, 5, and 6 were conducted to evaluate de-oiled corn dried distillers grains with solubles (dDGS) in grow-finish pigs. In Exp. 4, analyzed CP and AA content were higher, but lysine digestibility and energy content were lower in dDGS than traditional dried distillers grains with solubles (DDGS). In Exp. 5, 0 to 30% dDGS in nursery diets did not affect growth performance (P > 0.52). In Exp. 6, 0 to 30% dDGS reduced (linear; P < 0.01) ADG and ADFI, tended to improve (linear; P > 0.07) G:F, decreased (linear; P < 0.01) carcass yield, and increased (linear; P < 0.01) fat iodine values. Experiment 7 was conducted to determine the AA digestibility and energy concentration of novel high-CP distillers co-products from corn (HPC-DDG) and sorghum (HPS-DDGS). Digestibility of AA was higher for HPC-DDG but lower in HPS-DDGS than traditional DDGS. Both co-products had lower energy than traditional DDGS. Finally, Exp. 8, 9, 10, and 11 were used in a meta-analysis to evaluate supplementary dietary enzymes in pigs. Supplemental enzymes, alone or in combination, did not improve grow-finish pig performance (P > 0.58) regardless of dietary DDGS level. In conclusion, these experiments provide important empirical data to quantify production responses of various interventions and dietary ingredients under actual field conditions.