Isovaleric Acid (IVA) is a 5-carbon branched chain fatty acid present in fermented foods and produced by the fermentation of leucine by colonic bacteria. IVA activates G-protein coupled receptors such as FFAR2, FFAR3, and OR51E1 known to be expressed on enteric neurons and enteroendocrine cells. We previously reported that the shorter, straight chain fatty acids acetate, propionate and butyrate, differentially affect colonic propulsion; however, the effect of branched chain fatty acids on gastrointestinal motility is unknown. We hypothesize that IVA relaxes smooth muscle in a cAMP/PKA dependent manner by direct action on smooth muscle cells. IVA will also decrease peristalsis and encourage retention of luminal contents. This thesis investigates the effect of IVA on smooth muscle tension and peristaltic activity in isolated colon and individual smooth muscle cells. Colon segments from C57BL/6J mice were placed in a longitudinal orientation in organ baths in Krebs buffer and fastened to force transducers. Segments were contracted with 10 μM acetylcholine (ACh) and the effects of IVA at several concentrations were measured in the absence and presence of Nitric Oxide Synthase inhibitor L-N-nitroarginine (L-NNA), neuronal action potential inhibitor tetrodotoxin (TTX), and adenylate cyclase inhibitor SQ22536. To study individual live cells, mouse smooth muscle was isolated from colon, suspended in smooth muscle buffer, and after contraction with ACh were relaxed with micromolar concentrations of IVA. For peristalsis studies, whole colonic segments isolated from C57BL/6J were catheterized and placed horizontally in organ baths with circulating Krebs buffer. The colon was clamped on the anal end, and a solution (5 μL per mm of colon length) of either Krebs buffer or 50 mM IVA was delivered from the oral end to the lumen. Video of the peristalsis was then analyzed for diameter, changes in diameter, velocity of diameter changes along the length of the colon, normalized to the anatomical changes in the proximal region. IVA in concentrations of 10 mM to 50 mM relaxed the ACh-induced contraction in a sigmoidal fashion. In separate studies, L-NNA nor TTX affected the ability of IVA to inhibit relaxation. SQ22536 inhibited IVA induced relaxation in longitudinal colon compared to vehicle control. In isolated cells, SQ22536 and PKA inhibitor H-89 inhibited IVA-induced relaxation. In peristalsis studies, 50 mM IVA in Krebs buffer changed the character of the peristaltic action by increasing proximal diameter, inhibiting contractions in the proximal end of the colon, and decreasing overall velocity of peristaltic contractions in the proximal region. The data indicate that the branched chain fatty acid IVA causes a concentration-dependent relaxation of colonic smooth muscle that is direct to the smooth muscle and independent of neuronal activity. This relaxation is cAMP/PKA dependent. In addition to the direct relaxation of smooth muscle, intraluminal IVA decreased overall colonic propulsive activity and encouraged retention of the luminal contents. We conclude that the ingestion and production of branched chain fatty acids could affect overall GI motility and is an area for study in dietary and therapeutic control of bowel activity.

Thesis (Ph. D.)--University of Washington, 2003. / Vita. Includes bibliographical references (leaves 67-80).

published_or_final_version / abstract / toc / Zoology / Master / Master of Philosophy

Thesis (Ph. D.)--University of Washington, 1997. / Vita. Includes bibliographical references (leaves [115]-133).

La drépanocytose résulte d’une mutation du gène β-globine entrainant la synthèse d’une hémoglobine anormale, l’HBS, qui polymérise en condition désoxygénée. Le globule rouge deviendra plus rigide et plus fragile, donnant lieu a deux conséquences majeures : l’hémolyse accrue et l’occlusion vasculaire.Récemment, un nouvel acteur moléculaire, l’adénosine, a été identifie. Ce nucléoside présente des effets bénéfiques sur les atteintes pulmonaires en inhibant l’activation des cellules « tueur naturel t inductibles », mais aussi délétères en favorisant la polymérisation de l’HBS et la survenue du priapisme, une des complications drépanocytaires.Les travaux menés ont pour objectifs d’étudier les effets délétères potentiels de l’adénosine, à travers l’étude de l’implication des enzymes de la voie métabolique de l’adénosine dans l’hémolyse ainsi que dans la survenue du priapisme chez des patients drépanocytaires. Pour ce faire, une cohorte composée d’adultes et d’enfants SS a été étudiée. Les résultats obtenus ont permis de préciser le rôle du métabolisme de l’adénosine dans les mécanismes physiopathologiques de la drépanocytose. Nos résultats n’ont pas permis de mettre en évidence de différence d’expression (ARN, protéine) des enzymes du métabolisme de l’adénosine entre les patients présentant des antécédents priapiques et ceux indemnes de cette complication. Néanmoins, nos recherches ont permis d’identifier l’adénylate cyclasse 6 comme gène modulateur de l’hémolyse et d’apporter de nouveaux éléments en accord avec la classification du priapisme comme appartenant au sous-phénotype hyperhémolytique à travers notamment l’étude des caractéristiques hemorhéologiques. / Sickle-cell disease is caused by a mutation in the β-globin gene leading to an abnormal hemoglobin, hbs. This change allows polymerization of HBS when deoxygenated. Erythrocytes become more rigid and fragile, leading to the two major manifestations of the disease: hemolysis and vaso-occlusion.Recently, adenosine has been identified as a new molecular actor of this disease. This nucleoside may have beneficial effects by preventing inkt cells activation and pulmonary inflammation. But it may also exhibit deleterious effects by activing a signalling pathway leading to erythrocyte sickling and the occurrence of priapism, a sickle cell disease complication.The purpose of our work, based on the potential deleterious effects induced by adenosine was to precise the involvement of adenosine metabolic pathway enzymes in hemolysis and the occurrence of priapism. Two cohorts of children and adult ss patients and men ss have been studied respectively.Our results had clarified the role of metabolism of adenosine in the pathophysiological mechanisms of sickle cell disease. Our results did not allow detecting evidence of differential expression (rna, protein levels) of adenosine metabolism enzymes between ss adult patients exhibiting priapic events and those who had never experienced this complication. Nevertheless, our work has led to the identification of adenylate cyclase as modifier gene of hemolysis and has bring new elements on the priapism classification to the hyper hemolytic sub-phenotype with the description of the hemorheological features associated with this complication.

Chronic pressure overload (PO) is associated with cardiac hypertrophy and altered autonomic control of cardiac function, in which the latter may involve adaptations in central and/or peripheral cardiac neural control mechanisms. To evaluate the specific remodeling of the intrinsic cardiac nervous system following pressure overload, the descending thoracic aorta artery of the guinea pig was constricted ∼20%, and the animals recovered for 9 wk. Thereafter, atrial neurons of the intrinsic cardiac plexus were isolated for electrophysiological and immunohistochemical analyses. Intracellular voltage recordings from intrinsic cardiac neurons demonstrated no significant changes in passive membrane properties or action potential depolarization compared with age-matched controls and sham-operated animals, but afterhyperpolarization duration was increased in PO animals. Neuronal excitability, as determined by the number of action potentials produced with depolarizing stimuli, was differentially increased in phasic neurons derived from PO animals in response to exogenously applied histamine compared with sham and age-matched controls. Conversely, pituitary adenylate cyclase-activating polypeptide-induced increases in intrinsic cardiac neuron evoked AP frequency were similar between control and PO animals. Immunohistochemical analysis demonstrated a two-fold increase in the percentage of neurons immunoreactive for neuronal nitric oxide synthase in PO animals compared with control. The density of mast cells within the intrinsic cardiac plexus from PO animals was also increased twofold compared with preparations from control animals. These results indicate that congestive heart failure associated with chronic pressure overload induces a differential remodeling of intrinsic cardiac neurons and upregulation of neuronal responsiveness to specific neuromodulators.

Human schistosomiasis popularly known as bilharzias in many regions of Africa is a freshwater snail-transmitted disease caused by parasitic flatworms known as schistosomes. The growth and development of schistosomes typically requires developmental stages in multiple hosts and transmission stages in freshwater. These life cycle environments present a plethora of stressors. Certain gene families including heat shock proteins (HSPs/Hsps) and universal stress proteins (USPs) help schistosomes to respond to unfavourable conditions. The availability of genomes sequences information for Schistosoma japonicum, Schistosoma mansoni and Schistosoma haematobium provide unique research resources to apply bioinformatics analysis of its associated USPs to predict regulatory features from sequence analysis. The objectives of the research were to (i) Infer the biochemical and environmental regulation of universal stress proteins of Schistosoma species; (ii) Identify biological function relevant protein sequence and structure features for prioritized universal stress proteins from Schistosoma species; (iii) Determine the distinctive structural features of a predicted regulator of Schistosoma adenylate cyclase activity that has possible influence on the functioning of universal stress proteins. The findings revealed that (i) schistosomes USPs are hydrophilic and very reactive in the water environment or in aqueous phase, which seems adaptive with their immediate environment and developmental stages; (ii) The functions of Smp_076400 and Sjp_0058490 (Q86DW2) are regulated by conserved binding site residues and metallic ions ligands (Ca2+, Mg2+ and Zn2+), particularly Ca2+ predicted to bind to both USPs; (iii) The S. mansoni life cycle and stress resistance pathway protein (Smp_059340.1) is regulated by Ser53, Thr188, Gly210 and Asp207 residues. The overall scope has highlighted the role of bioinformatics in predicting exploitable regulatory features of schistosome universal stress proteins and biological pathways that might lead to identification of putative functional biomarkers of common environmental diseases. The findings of this research can be applicable to other areas of environmental health and environmental genomics. / Environmental Sciences / (D. Litt et Phil. (Environmental Sciences)

1 Abstract Adenylate cyclase toxin (CyaA) is one of the major virulence factors of bacterium Bordetella pertussis, which is a causative agent of whooping cough. CyaA belongs to the family of RTX toxin-hemolysins. The toxin targets primarily cells expressing integrin receptor CD11b/CD18 but it can also penetrate cells lacking this receptor. CyaA acts on host cells by two independent activities. One is formation of small cation-selective channels, which can lead to colloid osmotic lysis of target cells. The second is disruption of cell signaling through the translocation of the adenylate cyclase (AC) domain to host cell cytosol, which leads to the conversion of ATP into cyclic AMP. It was recently shown that cholesterol affects endocytosis of CyaA. CyaA translocates it's AC domain after relocation of CyaA molecule to the cholesterol-rich lipid raft (Bumba et al. 2010). In this work I examined the effect of cholesterol on channel- forming activity and selectivity of ion channels created by CyaA. For measurements I used artificial membranes enriched with cholesterol. CyaA channels are voltage-dependent. The positive membrane potential on the side of toxin is rquired for incorporation of CyaA molecule into cell membrane. I tried to find out whether the value of voltage has effect on channels opening time....

L'objectif principal de ces travaux de thèse est de développer des modèles membranaires biomimétiques pour la reconstitution et l'étude d'interactions protéine/membrane. Dans ce but, deux approches sont adoptées : l'une mettant en œuvre une plateforme basée sur des nanoparticules de silice/Au recouvertes de lipides et l'autre comprenant la formation de bicouches lipidiques découplées d'un support solide d'or. Dans la première approche, nous avons synthétisé des particules de silice de taille nanométrique contenant des grains d'or inclus dans la matrice silicique. Ces nanoparticules sont ensuite recouvertes par différents phospholipides. Les propriétés plasmoniques acquises grâce aux grains d'or sont caractérisées puis utilisées pour suivre l'interaction avec les lipides et/ou les protéines. Le suivi de ces interactions est également visualisé par analyse de la mobilité électrophorétique des particules. La deuxième stratégie développée, consiste à assembler un système membranaire sur une surface solide d'or. Dans un premier temps, une couche de calmoduline est liée à la surface de manière stable. Dans un deuxième temps, une bicouche est formée au-dessus de la couche de calmoduline par deux méthodes. La première méthode consiste à ancrer la bicouche directement sur la couche de protéine par un mécanisme faisant intervenir des lipides chélateurs. Alors que dans la deuxième méthode les lipides sont liés à la surface et découplés grâce à l'utilisation d'une surface d'or modifiée par de la cystéamine et à des lipides fonctionnalisés. L'ancrage est assuré par des groupements succinimidyl et le découplage par des polymères de polyéthylène glycol porté sur un même lipide. Dans les deux stratégies, un réservoir sub-membranaire est créé entre la bicouche étanche et le support. Le suivi des constructions moléculaires est réalisé par résonance plasmonique de surface et analyse du retour de fluorescence. De plus le système est implémenté par des électrodes afin d'étudier l'effet d'application de potentiel sur la bicouche. Après caractérisation, le modèle membranaire est validé par la reconstitution de la translocation de la toxine CyaA de Bordetella pertussis. Cette protéine dispose en effet d'un mécanisme d'internalisation singulier qui permet d'explorer tout le potentiel de notre modèle membranaire. / The main objective of this work is to develop biomimetic membrane models for the reconstitution and study of protein/membrane interaction. Two devices were designed: one operate a nanometric platform composed of phospholipids coated lipid silica/Au nanoparticles, while the other including tethered lipid bilayer reconstitution on a gold surface. The first approach needs the synthesis of nanometer sized gold/silica particles and that are subsequently coated with different phospholipids. The plasmonic properties provided by gold seeds are characterized and they are of utility to follow the interaction between lipids and/or proteins at the surface. Following of these interactions was also realized with electrophoretic mobility analysis. The second biomimetic device involves a membrane assembly on a gold surface. In a first time, a calmodulin layer is bound on the surface. In a second time, a lipid bilayer is assembled above the calmodulin layer by two approaches. In the first approach the lipid bilayer is anchored on the protein layer with chelators lipid and His-Tag bearing by the proteins. While, in the second approach, lipids are bound on the surface and tethered with the use of a cysteamin modified gold surface and functionalized lipids. The anchorage is realized by succinimidyl group and the tethering by polyethylene glycol group wearing by one kind of lipid. A sub-membrane reservoir is created under the lipid bilayer. The biomimetic model formation was followed by plasmonic resonance and fluorescence recovery after photobleaching. After their characterization the tethered model is validated by reconstitution of a particular mechanism: the CyaA toxin from Bordetella pertussis translocation.

Human schistosomiasis popularly known as bilharzias in many regions of Africa is a freshwater snail-transmitted disease caused by parasitic flatworms known as schistosomes. The growth and development of schistosomes typically requires developmental stages in multiple hosts and transmission stages in freshwater. These life cycle environments present a plethora of stressors. Certain gene families including heat shock proteins (HSPs/Hsps) and universal stress proteins (USPs) help schistosomes to respond to unfavourable conditions. The availability of genomes sequences information for Schistosoma japonicum, Schistosoma mansoni and Schistosoma haematobium provide unique research resources to apply bioinformatics analysis of its associated USPs to predict regulatory features from sequence analysis. The objectives of the research were to (i) Infer the biochemical and environmental regulation of universal stress proteins of Schistosoma species; (ii) Identify biological function relevant protein sequence and structure features for prioritized universal stress proteins from Schistosoma species; (iii) Determine the distinctive structural features of a predicted regulator of Schistosoma adenylate cyclase activity that has possible influence on the functioning of universal stress proteins. The findings revealed that (i) schistosomes USPs are hydrophilic and very reactive in the water environment or in aqueous phase, which seems adaptive with their immediate environment and developmental stages; (ii) The functions of Smp_076400 and Sjp_0058490 (Q86DW2) are regulated by conserved binding site residues and metallic ions ligands (Ca2+, Mg2+ and Zn2+), particularly Ca2+ predicted to bind to both USPs; (iii) The S. mansoni life cycle and stress resistance pathway protein (Smp_059340.1) is regulated by Ser53, Thr188, Gly210 and Asp207 residues. The overall scope has highlighted the role of bioinformatics in predicting exploitable regulatory features of schistosome universal stress proteins and biological pathways that might lead to identification of putative functional biomarkers of common environmental diseases. The findings of this research can be applicable to other areas of environmental health and environmental genomics. / Environmental Sciences / (D. Litt et Phil. (Environmental Sciences)