Thesis (M.S.)--Worcester Polytechnic Institute. / Keywords: sensor, synthesis, bicyclic, fluoroionophore, nonactin, ion-selective, ammonium. Includes bibliographical references (leaves 117-119 ).

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Thesis (M.E.)--University of Canterbury, 2002. / Typescript (photocopy). Includes bibliographical references (leaves 159-166). Also available via the World Wide Web.

The drawbacks of nonactin, the current commercial standard receptor for ammonium ion necessitate the development of new ammonium ionophores. We have designed and attempted to synthesize fluoroionophores, I- III. Molecular modeling of I suggests superior selectivity over that of nonactin. III was synthesized as a selective ionophore for optical detection of ammonium ion. The synthetic strategies for III are two-fold: solid phase and solution phase. Solution phase synthesis was performed with two different protecting groups (t-butyl ester and benzyl ester). A methyl-amino substituted anthracene molecule will be covalently coupled to the secondary amine group to provide an optical signaling moiety that operates on the basis of an“off-on" fluorescence emission mechanism. Compound IV was also synthesized in order to provide a sample reaction for the covalent coupling of the chromophore and to provide a fast route to an ammonium fluoroionophore.

The thesis deals with the issue of drinking water. The aim of the study is to evaluate quality parameters of drinking water in connection with legislation attending to this issue. The evaluation was conducted in nine agricultural subjects and analyzes of drinking water were determined and evaluated. Microbiological and hydrochemical indicators of drinking water were compared within the year 2015. Regarding microbiological indicators, coliforms, Escherichia coli, enterococci, psychrophilic bacteria were followed. Ammonia nitrogen, nitrate nitrogen, phosphate phosphor, total inorganic carbon, total organic carbon, total carbon, total nitrogen, pH, conductivity were followed regarding hydrochemical indicators. The final values showed exceeded values of the microbiological indicators at five sampling sites according to applicable legislation. Furthermore, threshold values of total organic carbon were exceeded in all tested agricultural subjects and also values of nitrate nitrogen in drinking water were increased at three subjects evaluated throughout the year.

<p> The possibility of isomeric nuclear spin states existing among the ammonium ions at low temperatures has been investigated for some twenty ammonium salts. Measurements have been made of the proton absorption signals at 4.2°K, and the temperature dependences, where previously unavailable, of the spin-lattice relaxation time.</p> <p> Some of the salts exhibit the normal rigid lattice spectra and second moments characteristic of distinguishable protons, but most exhibit some degree of line narrowing at 4.2°K. The data shows that thermally activated reorientations are effectively frozen out at this temperature and cannot be responsible for such narrowing.</p> <p> It is concluded that the narrow spectra, although indicative of indistinguishability among the protons, are not attributable solely to spin isomerism, but are being modified by a further mechanism, probably tunneling of the ammonium ion through the crystal field barrier.</p> / Thesis / Doctor of Philosophy (PhD)

A caracterização bioquímica da (Na+,K+)-ATPase, uma importante enzima envolvida no controle osmo-iônico nos crustáceos osmorreguladores, foi realizada a partir de centrifugação diferencial de frações microsomais do tecido branquial do siri eurialino C. danae, coletado na Baía de Ubatuba e mantido a 33o/oo de salinidade (animais recém-capturados). A ultracentrifugação da fração microsomal em um gradiente contínuo de sacarose (10-50%) revelou a presença de um único pico de atividade (Na+, K+)-ATPase, coincidente com o pico de atividade K+-fosfatase. Ambas as atividades foram inibidas completamente pela ouabaína. O Western blotting da fração microsomal apresentou uma única banda imunoespecífica contra a subunidade alfa da (Na+, K+)-ATPase, sugerindo a presença de uma única isoforma para a cadeia alfa da enzima. A hidrólise do ATP ocorreu em sítios de alta afinidade que apresentaram interações sítio-sítio (nH=3,6) com uma atividade específica V= 35,4 ± 2,1 U/mg e K0,5= 54,0 ± 4,0 nM, bem como em sítios de baixa afinidade, que obedeceram uma cinética Michaeliana, com V= 271,5 ± 17,2 U/mg e KM = 55,0 ± 3,0 uM. A estimulação da atividade da enzima pelos íons Na+ (V= 302,1 ± 14,1 U/mg e K0,5= 5,80 ± 0,3 mM), Mg2+ (V= 309,7 ± 15,7 U/mg e K0,5= 0,48 ± 0,02 mM) e K+ (V= 294,0 ± 11,8 U/mg e K0,5= 1,61 ± 0,06 mM) ocorreu através de interações sítio-sítio, enquanto a estimulação pelos íons NH4+ obedeceu a uma cinética Michaeliana com V= 377,8 ± 22,7 U/mg e KM= 4,61 ± 0,27 mM). Interessantemente, os íons NH4+ estimularam sinergisticamente a atividade específica da enzima em cerca de 90% (V= 557,0 ± 28,3 U/mg), sugerindo que esses íons se ligam em diferentes sítios na molécula. A (Na+,K+)-ATPase do tecido branquial de C. danae hidrolisou o PNFF com V= 125,4 ± 7,5 U/mg, K0,5= 1,2 ± 0,1 mM, através de interações cooperativas (nH= 1,5). Além disso, essa atividade K+-fosfatase foi inibida competitivamente pelo ATP (KI= 57,2 ± 2,6 µM), sugerindo que os dois substratos foram hidrolisados no mesmo sítio da enzima. A estimulação da atividade K+-fosfatase da (Na+,K+)-ATPase pelos íons K+ (V= 121,0 ± 6,1 U/mg; K0,5= 2,1 ± 0,1 mM), Mg2+ (V= 125,3 ± 6,3 U/mg; K0,5= 1,0 ± 0,1 mM) e NH4+ (V= 126,1 ± 4,8 U/mg; K0,5= 13,7 ± 0,5 mM) ocorreram através de interações sítio-sítio, similarmente ao observado para o ATP. A ouabaína e o ortovanadato inibiram completamente a atividade (Na+,K+)-ATPase (KI= 147,2 ± 7,2 uM; KI= 11,2 ± 0,6 nM, respectivamente). Entretanto, para a atividade K+-fosfatase os valores determinados foram significativamente superiores (KI= 830,3 ± 42,5 uM; KI= 34,0 ± 1,4 nM, respectivamente). A inibição da atividade da (Na+,K+)-ATPase por essas duas substâncias foi afetada pela presença de íons NH4+. Entretanto, o mesmo não ocorreu com a atividade K+-fosfatase da enzima. A representação de Arrhenius revelou a ocorrência de uma transição de fase próximo a 19°C, com deltaH1= 15.939 cal/mol e outra a 38°C com deltaH2= 7.719 cal/mol. Temperaturas acima de 43°C provocaram uma rápida inativação da (Na+,K+)-ATPase. Esta é a primeira demonstração da presença de um sítio de alta afinidade para o ATP na (Na+,K+)-ATPase de crustáceo. Os resultados obtidos sugerem que as atividades (Na+,K+)-ATPase e K+-fosfatase pertencem à mesma enzima e que a preparação não apresenta contaminações por outras ATPases e/ou fosfatases. Do ponto de vista fisiológico, os resultados deste trabalho são relevantes em relação à excreção ativa dos íons NH4+ pelos crustáceos. / The modulation by Mg+2, Na+, K+, NH4+ ions and ATP of the (Na+, K+)-ATPase activity in a microsomal fraction from Callinectes danae gills was analyzed. ATP was hydrolyzed at high-affinity binding sites at a maximal rate of V= 35.4 ± 2.1 U/mg and K0.5= 54.0 ± 3.6 nM, obeying cooperative kinetics (nH= 3.6). At low-affinity sites, the enzyme hydrolyzed ATP obeying Michaelis-Menten kinetics with KM= 55.0 ± 3.0 uM and V= 271.5 ± 17.2 U/mg. This is the first demonstration of a crustacean (Na+, K+)-ATPase possessing two ATP hydrolyzing sites. Stimulation by sodium (K0.5= 5.80 ± 0.30 mM), magnesium (K0.5= 0.48 ± 0.02 mM) and potassium ions (K0.5= 1.61 ± 0.06 mM) exhibited site-site interactions, while that by ammonium ions obeyed Michaelis-Menten kinetics (KM= 4.61 ± 0.27 mM). Ouabain (KI= 147.2 ± 7.2 uM) and orthovanadate (KI= 11.2 ± 0.6 nM) completely inhibited ATPase activity, indicating the absence of contaminating ATPase and/or neutral phosphatase activities. Ammonium and potassium ions synergistically stimulated the enzyme, increasing specific activities up to 90%, suggesting that these ions bind to different sites on the molecule and that the presence of each ion modulates enzyme stimulation by the other. The kinetic properties of a microsomal gill (Na+,K+)-ATPase were also analyzed using p-nitrophenylphosphate as substrate. The (Na+,K+)-ATPase hydrolyzed the substrate obeying cooperative kinetics (n= 1.5) at rates of V= 125.4 ± 7.5 U/mg and K0.5= 1.2 ± 0.1 mM and ATP competitively inhibited K+-phosphatase activity (KI= 57.2 ± 2.6 µM). Enzyme stimulation by potassium (V= 121.0 ± 6.1 U/mg; K0.5= 2.1 ± 0.1 mM) and magnesium ions (V= 125.3 ± 6.3 U/mg; K0.5= 1.0 ± 0.1 mM) was cooperative. Ammonium ions stimulated the enzyme through site-site interactions to a rate of V= 126.1 ± 4.8 U/mg with K0.5= 13.7 ± 0.5 mM. However, the K+-phosphatase activity was not synergistically stimulated using potassium plus ammonium ions. Sodium ions (KI= 36.7 ± 1.7 mM), ouabain (KI= 830.3 ± 42.5 uM) and orthovanadate (KI= 34.0 ± 1.4 nM) completely inhibited K+-phosphatase activity. The data show that the K+-phosphatase activity corresponds strictly to the (Na+,K+)-ATPase. This is the first invertebrate (Na+,K+)-ATPase shown to exhibit both high- and low-affinity sites for ATP hydrolysis and synergistic stimulation by potassium and ammonium ions (Masui et al., 2002). Further characterization of the K+-phosphatase activity will reveal its specific kinetic characteristics and may become a useful tool in comparative osmoregulatory studies.

A caracterização bioquímica da (Na+,K+)-ATPase, uma importante enzima envolvida no controle osmo-iônico nos crustáceos osmorreguladores, foi realizada a partir de centrifugação diferencial de frações microsomais do tecido branquial do siri eurialino C. danae, coletado na Baía de Ubatuba e mantido a 33o/oo de salinidade (animais recém-capturados). A ultracentrifugação da fração microsomal em um gradiente contínuo de sacarose (10-50%) revelou a presença de um único pico de atividade (Na+, K+)-ATPase, coincidente com o pico de atividade K+-fosfatase. Ambas as atividades foram inibidas completamente pela ouabaína. O Western blotting da fração microsomal apresentou uma única banda imunoespecífica contra a subunidade alfa da (Na+, K+)-ATPase, sugerindo a presença de uma única isoforma para a cadeia alfa da enzima. A hidrólise do ATP ocorreu em sítios de alta afinidade que apresentaram interações sítio-sítio (nH=3,6) com uma atividade específica V= 35,4 ± 2,1 U/mg e K0,5= 54,0 ± 4,0 nM, bem como em sítios de baixa afinidade, que obedeceram uma cinética Michaeliana, com V= 271,5 ± 17,2 U/mg e KM = 55,0 ± 3,0 uM. A estimulação da atividade da enzima pelos íons Na+ (V= 302,1 ± 14,1 U/mg e K0,5= 5,80 ± 0,3 mM), Mg2+ (V= 309,7 ± 15,7 U/mg e K0,5= 0,48 ± 0,02 mM) e K+ (V= 294,0 ± 11,8 U/mg e K0,5= 1,61 ± 0,06 mM) ocorreu através de interações sítio-sítio, enquanto a estimulação pelos íons NH4+ obedeceu a uma cinética Michaeliana com V= 377,8 ± 22,7 U/mg e KM= 4,61 ± 0,27 mM). Interessantemente, os íons NH4+ estimularam sinergisticamente a atividade específica da enzima em cerca de 90% (V= 557,0 ± 28,3 U/mg), sugerindo que esses íons se ligam em diferentes sítios na molécula. A (Na+,K+)-ATPase do tecido branquial de C. danae hidrolisou o PNFF com V= 125,4 ± 7,5 U/mg, K0,5= 1,2 ± 0,1 mM, através de interações cooperativas (nH= 1,5). Além disso, essa atividade K+-fosfatase foi inibida competitivamente pelo ATP (KI= 57,2 ± 2,6 µM), sugerindo que os dois substratos foram hidrolisados no mesmo sítio da enzima. A estimulação da atividade K+-fosfatase da (Na+,K+)-ATPase pelos íons K+ (V= 121,0 ± 6,1 U/mg; K0,5= 2,1 ± 0,1 mM), Mg2+ (V= 125,3 ± 6,3 U/mg; K0,5= 1,0 ± 0,1 mM) e NH4+ (V= 126,1 ± 4,8 U/mg; K0,5= 13,7 ± 0,5 mM) ocorreram através de interações sítio-sítio, similarmente ao observado para o ATP. A ouabaína e o ortovanadato inibiram completamente a atividade (Na+,K+)-ATPase (KI= 147,2 ± 7,2 uM; KI= 11,2 ± 0,6 nM, respectivamente). Entretanto, para a atividade K+-fosfatase os valores determinados foram significativamente superiores (KI= 830,3 ± 42,5 uM; KI= 34,0 ± 1,4 nM, respectivamente). A inibição da atividade da (Na+,K+)-ATPase por essas duas substâncias foi afetada pela presença de íons NH4+. Entretanto, o mesmo não ocorreu com a atividade K+-fosfatase da enzima. A representação de Arrhenius revelou a ocorrência de uma transição de fase próximo a 19°C, com deltaH1= 15.939 cal/mol e outra a 38°C com deltaH2= 7.719 cal/mol. Temperaturas acima de 43°C provocaram uma rápida inativação da (Na+,K+)-ATPase. Esta é a primeira demonstração da presença de um sítio de alta afinidade para o ATP na (Na+,K+)-ATPase de crustáceo. Os resultados obtidos sugerem que as atividades (Na+,K+)-ATPase e K+-fosfatase pertencem à mesma enzima e que a preparação não apresenta contaminações por outras ATPases e/ou fosfatases. Do ponto de vista fisiológico, os resultados deste trabalho são relevantes em relação à excreção ativa dos íons NH4+ pelos crustáceos. / The modulation by Mg+2, Na+, K+, NH4+ ions and ATP of the (Na+, K+)-ATPase activity in a microsomal fraction from Callinectes danae gills was analyzed. ATP was hydrolyzed at high-affinity binding sites at a maximal rate of V= 35.4 ± 2.1 U/mg and K0.5= 54.0 ± 3.6 nM, obeying cooperative kinetics (nH= 3.6). At low-affinity sites, the enzyme hydrolyzed ATP obeying Michaelis-Menten kinetics with KM= 55.0 ± 3.0 uM and V= 271.5 ± 17.2 U/mg. This is the first demonstration of a crustacean (Na+, K+)-ATPase possessing two ATP hydrolyzing sites. Stimulation by sodium (K0.5= 5.80 ± 0.30 mM), magnesium (K0.5= 0.48 ± 0.02 mM) and potassium ions (K0.5= 1.61 ± 0.06 mM) exhibited site-site interactions, while that by ammonium ions obeyed Michaelis-Menten kinetics (KM= 4.61 ± 0.27 mM). Ouabain (KI= 147.2 ± 7.2 uM) and orthovanadate (KI= 11.2 ± 0.6 nM) completely inhibited ATPase activity, indicating the absence of contaminating ATPase and/or neutral phosphatase activities. Ammonium and potassium ions synergistically stimulated the enzyme, increasing specific activities up to 90%, suggesting that these ions bind to different sites on the molecule and that the presence of each ion modulates enzyme stimulation by the other. The kinetic properties of a microsomal gill (Na+,K+)-ATPase were also analyzed using p-nitrophenylphosphate as substrate. The (Na+,K+)-ATPase hydrolyzed the substrate obeying cooperative kinetics (n= 1.5) at rates of V= 125.4 ± 7.5 U/mg and K0.5= 1.2 ± 0.1 mM and ATP competitively inhibited K+-phosphatase activity (KI= 57.2 ± 2.6 µM). Enzyme stimulation by potassium (V= 121.0 ± 6.1 U/mg; K0.5= 2.1 ± 0.1 mM) and magnesium ions (V= 125.3 ± 6.3 U/mg; K0.5= 1.0 ± 0.1 mM) was cooperative. Ammonium ions stimulated the enzyme through site-site interactions to a rate of V= 126.1 ± 4.8 U/mg with K0.5= 13.7 ± 0.5 mM. However, the K+-phosphatase activity was not synergistically stimulated using potassium plus ammonium ions. Sodium ions (KI= 36.7 ± 1.7 mM), ouabain (KI= 830.3 ± 42.5 uM) and orthovanadate (KI= 34.0 ± 1.4 nM) completely inhibited K+-phosphatase activity. The data show that the K+-phosphatase activity corresponds strictly to the (Na+,K+)-ATPase. This is the first invertebrate (Na+,K+)-ATPase shown to exhibit both high- and low-affinity sites for ATP hydrolysis and synergistic stimulation by potassium and ammonium ions (Masui et al., 2002). Further characterization of the K+-phosphatase activity will reveal its specific kinetic characteristics and may become a useful tool in comparative osmoregulatory studies.

Uncontrolled spreading of genetically modified (GM) plants is one of the main concerns about their cultivation. Inducible RNA interference against an essential gene could be a tool for control of GM plants. After spraying with a chemical inducer, the essential gene will be silenced so the treated GM plant will die. For testing this strategy we chose two key enzymes of nitrogen metabolism, glutamate synthase (GOGAT) and glutamine synthetase (GS). GS processes ammonium ions into glutamine, then GOGAT transfers the amide group from glutamine to 2-oxoglutarate to form two glutamates. GS/GOGAT cycle is the main pathway for assimilation of ammonium ions, which could be toxic to plants in a higher concentration. Disruption of ammonium assimilation during photorespiration causes a strong inhibition of photosynthesis. The aim of this work was to describe the effects of silencing GOGAT and GS genes in Arabidopsis thaliana. To induce silencing, RNAi hairpin constructs under a control of constitutive or estradiol-inducible promoter were prepared. In selected independent transformants with the inducible hairpin against GOGAT, chlorosis and reduced growth were observed after the estradiol treatment in in vitro conditions. However, the spraying with estradiol was tricky, at the whole plant level, the induction of...