Dissertation (Ph.D.) -- University of Texas Southwestern Medical Center at Dallas, 2008. / Vita. Bibliography: p.157-158

Diss. (sammanfattning) Stockholm : Karolinska institutet, 2010.

NASCIMENTO, Patrícia Georgina Garcia do. Obtenção de derivados do ácido litocólico e suas atividades antimicrobianas. 2012. 117 f. Dissertação (Mestrado em química)- Universidade Federal do Ceará, Fortaleza-CE, 2012. / Submitted by Elineudson Ribeiro (elineudsonr@gmail.com) on 2016-06-03T18:17:55Z No. of bitstreams: 1 2012_dis_pggnascimento.pdf: 5445392 bytes, checksum: 57f80974741d6dccc7b7577bd1931146 (MD5) / Approved for entry into archive by José Jairo Viana de Sousa (jairo@ufc.br) on 2016-07-20T20:41:32Z (GMT) No. of bitstreams: 1 2012_dis_pggnascimento.pdf: 5445392 bytes, checksum: 57f80974741d6dccc7b7577bd1931146 (MD5) / Made available in DSpace on 2016-07-20T20:41:32Z (GMT). No. of bitstreams: 1 2012_dis_pggnascimento.pdf: 5445392 bytes, checksum: 57f80974741d6dccc7b7577bd1931146 (MD5) Previous issue date: 2012 / This paper describes obtaining eight lithocholic acid derivatives, as well as inhibitory activity. Interest in the use of lithocholic acid as starting material for the preparation of derivatives arose because of it being widely studied in order to discover new biological activities and such studies have shown good results. In this work it was used for the synthesis of a series of derivatives with modifications at the C-3 and/or C-24 of the steroid skeleton. The series was prepared using simple chemical and showed good yields. Aiming to investigate the antibacterial activity of the same and its derivatives, aiming to structure-activity relationships, tests were performed with bacteria Escherichia coli, Staphylococcus aureus, Bacillus cereus and Pseudomonas aeruginosa, try some of them presented significant results. And lithocholic acid derivatives were characterized by spectroscopic IR, 1H NMR, 13C-BB NMR and 13C-DEPT NMR and mass spectrometry as well as comparison with data in the literature and described constitute the body of the dissertation. / Esse trabalho descreve a obtenção de oito derivados do ácido litocólico, bem como, suas atividades antimicrobianas. O interesse pela utilização do ácido litocólico como material de partida na preparação de derivados surgiu pelo fato do mesmo sendo bastante estudado com o objetivo de descobrir novas atividades biológicas e tais estudos terem apresentado bons resultados. Nesse trabalho, o ácido litocólico foi submetido a modificações moleculares nas posições C-3 e/ou C-24 do esqueleto esteroidal. A série foi preparada utilizando química convencional e apresentando bons rendimentos. Com o objetivo de investigar a atividade antimicrobiana dos compostos, foram realizados testes com as bactérias Escherichia coli, Staphylococcus aureus, Bacillus cereus e Pseudomonas aeruginosa, tento alguns deles apresentado resultados bastante significativos. O ácido litocólico e seus derivados foram caracterizados por métodos espectroscópicos de IV, RMN 1H, RMN 13C-BB e RMN 13C-DEPT e por espectrometria de massa, bem como comparação com dados descritos na literatura.

Aim of the master thesis was the development and the optimization of the HPLC method with fluorescence detection for the determination of the bile acids in the bile of mice. On the basis of literature, the HPLC-FLD method has been proposed and optimized for the quantification of eight bile acids (cholic acid, glycocholic acid, deoxycholic acid, glycodeoxycholic acid, chenodeoxycholic acid, glycochenodeoxycholic acid, α-muricholic acid, and λ-muricholic acid) in the biological material. 1,2-benzo-3,4-dihydrocarbazole-9-ethyl-p-toluenesulfonate is suitable derivatization reagent for labeling of the bile acids. The calibration dependences, limits of detection and quantification (in the range of 0.88-1.78 μmol dm -3 ) for all bile acids are measured. In the biological sample five bile acids have been successfully identified and then determined (cholic acid, glycocholic acid, glycodeoxycholic acid, glycochenodeoxycholic acid, and α-muricholic acid). Key words: bile acids, HPLC, fluorescence detector, derivatization reaction, bile

Abstract α-Methylacyl-CoA racemase (Amacr) is an enzyme at the merging point of two important pathways of lipid metabolism: elimination of methyl-branched fatty acids and synthesis of bile acids. Amacr is regarded as obligatory for these processes. Patients with Amacr-deficiency suffer from adult onset sensory motor neuropathy and/or severe neonatal cholestasis with coagulopathy and fat-soluble vitamin malabsorption. Amacr is also linked to cancer and so far has been proposed as a new marker for diagnosis of at least prostate and colon cancers. Common sources of phytol derived branched-chain fatty acids for man are ruminant fats, meat and dairy products. The bile acid synthesis is the main pathway for cholesterol catabolism. Amacr is considered to be a member of family III of the CoA transferases (L-carnitine dehydratase - bile acid inducible protein F (CaiB-BaiF) family) and localized to two subcellular compartments, mitochondria and peroxisomes. In this work the mouse gene encoding Amacr was characterized, the gene was inactivated and mutational and structural studies were used to determine the loop and the active site structure of the enzyme. It was shown that mouse Amacr which locates both to mitochondria and peroxisomes, is an identical product of a single gene, which is located at chromosome 15, region 15B1. Neither alternative replication, splicing, or any post-translational modifications of the enzyme occur. The mouse model for Amacr-deficiency indicated a role of Amacr in detoxification of methyl-branched fatty acids, and suggested that a diet free from these phytol metabolites may function as a treatment for the deficiency. Furthermore, major changes were observed in the bile acid pool of the knock-out mice compared to wild type mice. However, the study suggests that there is an Amacr-independent pathway for synthesis of bile acids albeit of low capacity, which provides a way for Amacr-deficient individuals to survive. The mutational and structural studies confirmed Amacr as a member of family III of the CoA transferases. Furthermore, according to comparisons of the structural data of Amacr and other members of the family (FRC, YfdW), the superfamily can be divided into two subgroups, racemases and transferases. Proteins in the subfamilies share the CoA-binding mode, but the substrate specificities as well as the catalysed reaction differ greatly.

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Chapter 1: Supramolecular gels and their applications Gels are viscoelastic materials composed of a solid-like three dimensional fibrillar network that is embedded in a liquid. Supramolecular gels belong to a class of gels which are derived from low molecular weight compounds (typically < 1000). A variety of non-covalent interactions like H-bonding, π-π stacking, donor-acceptor, metal coordination, solvophobic and van der Waals interactions are involved in the formation of the self-assembled fibrous networks (SAFIN’s) in these gels. These non-covalent interactions are weak in nature and as a result, these gels can be reverted back to sol by heating and this process is reversible. These gels are further classified as hydrogels, organogels and aero/xerogels depending on the medium they encompass. Although low molecular weight gelators were known in the early part of the 20th century, it is only in the last two decades that this field has generated widespread interest among scientists. In the 90s, the investigations on these kinds of gels mainly focused on designing new gelator molecules. However, during the last decade, the research interest in this field has shifted more towards designing functional gels. Such gels Scheme 1. Various applications of functional supramolecular gels have been extensively utilized in the templated synthesis of inorganic nanomaterials, in making hybrid materials, as synthetic light harvesting systems, as sensors, in the field of biomaterials such as drug delivery, screening of enzyme inhibitors and tissue engineering and also in the field of organic optoelectronics. In this chapter a few selected examples from each of these fields are highlighted. Chapter 2: Charge transfer induced organogels from 2,3dialkoxyanthracenes and 2,4,7-trinitrofluorenone 2,3-Di-n-alkoxyanthracenes formed charge transfer (CT) interaction promoted organogels in the presence of electron acceptor 2,4,7-trinitrofluorenone (TNF). These dialkoxyanthracences (in the absence of TNF) have been reported previously to form gels in a variety of organic solvents. The gelation property was found to be dependent on the chain length and the derivatives with C6-C16 chains were found to be gelators. On the other hand derivatives with C5-C1 chains were found to be non-gelators. It was found that TNF not only modulated the gelation property of the efficient organogelators, it also transformed the weak and non-gelators into efficient gelators. This charge transfer induced gelation was observed for the derivatives with C10-C4 chains in alcoholic and hydrocarbon solvents whereas the shorter chain derivatives C3-C1 did not form gels. Several other alkoxy and dialkoxy derivatives with substituents in other positions did not show gelation in the presence of TNF. These results suggested that two structural aspects are necessary for these derivatives to form CT gels- the alkoxy chain length and the position of the alkoxy substituents. The thermal stability of all these gels was found to be maximum with a 1:1 stoichiometry of the donor and the acceptor. The common observation, the intensification of color in going from the sol to the gel phase, supported the crucial role of the charge transfer interaction behind the formation of these gels. The rheological characterization of the gels demonstrated that they Figure 1. Chemical structures of 2,3-dialkoxyanthracenes and TNF (middle) and a fluorescence confocal microscopy image (left) and a photograph (right) of DDOA-TNF gel. behaved like viscoelastic soft solids. Chapter 3: A new class of perfluorinated derivatives of bile acids: Synthesis and gelation properties A new class of bile acid based gelators was designed by connecting the side chains of the facially amphiphilic bile acid with perfluoroalkyl chains of different lengths through two different ester linkages-–O-(CO)-and –(CO)-OCH2-. All these three structural aspects i.e. the bile acid moiety, the fluoroalkyl chain length and the spacer were found to influence the gelation properties of the derivatives. Depending on them, there was a variation in terms of the nature of the solvent gelated, the CGCs, the mechanical properties of the gels, etc among the derivatives. The deoxycholic and lithocholic derivatives with the spacer –O-(CO)-formed gels in aromatic hydrocarbons and also in DMSO depending on the fluoroalkyl chain length. The mechanical properties of the gels formed in DMSO were found to be dependent on the bile acid moiety and the fluoroalkyl chain length. In general, the deoxy analogues showed higher elasticity, stiffness and yield stress values for their gels than the litho derivatives. The perfluorinated derivatives having the spacer –(CO)-OCH2-showed gelation properties in organic-aqueous media and in DMSO. Interestingly, organogelation was observed in the deoxy and lithocholic derivatives from both spacer series whereas in the literature most of the bile acid based organogelators are derived from cholic acid. (b) (c) Figure 2. (a) Perfluorinated derivatives of bile acids, (b) photographs of a few DMSO gels and (c) TEM image of a xerogel of a deoxy derivative Chapter 4: Composite aerogels and organogels from 2,3didecyloxyanthracene and bile-perfluoro derivatives Aerogels are unique materials among solids. They have extremely low densities (up to 95% of their volume is air), large pores and high inner surface area. As a result aerogels have very interesting physical properties such as extremely low thermal conductivity, low sound velocity and high optical transparency. There are only a few reports of aerogel formation by low molecular weight gelators. We have investigated the aerogel formation ability of three long 7 chain perfluoroalkyl esters (two deoxycholic and one lithocholic derivative, chart 1) in supercritical CO2. A deoxy derivative, formed aerogel in sc-CO2. When mixed with DDOA (which has been reported previously to form good aerogels in sc-CO2), the perfluoro compound formed aerogels of better quality. The mixed aerogels were characterized by the presence of very large fibers in the micron range (as observed in the aerogel formed by only the fluoro derivative) as well as fibers of smaller size observed in pure DDOA aerogel. We also investigated the behavior of the composite systems in organic solvents. It was found that in DMSO, another deoxy derivative, Figure 3. SEM images of a mixed aerogel of DDOA-DC23C13F27 (left) and a mixed organogel (DMSO) of DDOA-DC23C11F23 (right). DC23C11F23 formed gels with higher thermal stability and improved mechanical properties compared to the native gels of the perfluoro compound or DDOA. Chapter 5: Hydrogels from lanthanide(III) cholates: Tunable, multiple color luminescence from hydrogels and xerogels In this chapter, facile hydrogel formation by several lanthanide cholates is reported. When sodium cholate was added to aqueous solutions of Nd(III), Sm(III), Eu(III), Gd(III), Tb(III), Dy(III), Ho(III), Er(III), Tm(III) and Yb(III) and sonicated, the mixtures formed gels within a few seconds. The gels thus obtained were transparent/translucent and thermoirreversible. Rheological measurements showed that all of them could be classified as viscoelastic soft solids. A naphthalene derivative, 2,3-dihyroxynaphthalene was found to sensitize Tb(III) emission very efficiently in its cholate gel when doped in micromolar concentrations. The importance of the gel matrix behind sensitization of Tb(III) was demonstrated by the inefficiency of the same sensitizer DHN in an SDS micellar solution. In mixed gels of Tb(III)-Eu(III) doped with DHN, a energy transfer pathway was found to occur from the sensitized Tb(III) to Eu(III). By a simple tuning of the ratio of these two lanthanide ions, multiple color emissive gels could be made.The emissive properties of the hydrogels were retained in the xerogels and the suspensions of these xerogels in n-hexane were used for making luminescent coatings on glass surface. Figure 4. Tunable, multi-color luminescent hydrogels and xerogels of lanthanide cholates

Chez l’homme, des données cliniques décrivent une association entre des pathologies hépatiques et des désordres de la fertilité masculine. Plusieurs modèles expérimentaux de cholestase ont permis de confirmer ce lien et de souligner un impact sur la physiologie testiculaire. De manière intéressante, une telle corrélation existe aussi bien à l’âge adulte que dans des modèles animaux en période pré-pubertaire. Pour autant, le lien moléculaire pouvant expliquer cette association physiopathologique n’a pas été exploré. L’ensemble des hépatopathies a pour dénominateur commun une augmentation des taux plasmatiques d’acides biliaires et ce dès les stades les plus précoces de la maladie. Dans ce contexte, l’hypothèse de l’impact délétère des acides biliaires sur la fonction reproductrice reste à définir. Notre projet de recherche s’articule autour de l’analyse d’un modèle murin d’atteinte hépatique induite par un régime supplémenté en acide cholique. Nos résultats principaux montrent que : 1) lors d’une exposition pubertaire, l’activation supra-physiologique des signalisations Fxrα conduit à un défaut de maturation sexuelle associé à une altération de la fonction endocrine du testicule ; 2) dans un contexte d’exposition à l’âge adulte, l’activation excessive du récepteur membranaire Tgr5 par les acides biliaires est associées à une hypofertilité. Celle-ci s’accompagne d’une altération de la spermatogenèse consécutive à un détachement progressif de l’épithélium séminifère et à une apoptose spécifique des spermatides ; 3) enfin, nos conclusions démontrent pour la première fois l’impact transgénérationnel de l’exposition aux acides biliaires. Sur deux générations successives, les descendants des mâles adultes nourris par un régime supplémenté en acide cholique présentent des anomalies développementales et métaboliques. Dépendantes de l’action de Tgr5, ces dernières sont attribuées à des altérations de l’épigénome des spermatozoïdes issus des mâles exposés aux acides biliaires. En conclusion, nos données démontrent que, dans des conditions cholestatiques, les acides biliaires altèrent les fonctions de reproduction notamment par leurs impacts sur les fonctions testiculaires. Au regard du nombre croissant de personnes souffrant de troubles hépatiques, ces effets délétères des acides biliaires pourraient contribuer à l’augmentation de l’incidence de l’infertilité masculine. Des molécules agonistes des signalisations FXRα et TGR5 sont aujourd’hui envisagées dans le cadre du traitement de pathologies courantes de notre société. Dans ce contexte, notre étude permettra d’alerter les instances sanitaires quant aux conséquences de l’accès à de tels traitements sur la fertilité et la santé des générations futures. / Clinical data describe an association between liver diseases and disorders of male fertility. Several experimental models of cholestasis have confirmed this link and highlight an impact on testicular physiology. Interestingly, such correlation exists in adult as well as in during pre-pubertal animals. However, the molecular links have not been explored yet. The increase of plasma bile acids levels is a common feature of liver diseases. In this context, the hypothesis of the deleterious impact of bile acids on reproductive function remains to be defined. For that purpose, we used a mouse model of liver injury induced by a diet supplemented with cholic acid. Main results show that: 1) supra-physiological activation of Fxra, during pubertal period, alters endocrine function of the testis and then sexual maturation. 2) during adult age excessive activation of membrane receptor TGR5 by bile acids leads to subfertility. This is associated with impaired spermatogenesis due to a detachment of the seminiferous epithelium and specific apoptosis of spermatids. 3) Finally, we show for the first time the transgenerational impact of bile acid exposure. Two generations of progenies from males exposed to bile acid-diet show developmental and metabolic abnormalities. These effects, mediated by TGR5, are correlated with alterations of the spermatozoa epigenome. In conclusion, our data demonstrate that bile acids affect reproductive functions with impacts on testicular functions. In line with the increasing number of people with liver diseases, the deleterious effects of bile acids may contribute to the incidence of male infertility. Interestingly, agonists of FXRα and TGR5 are now considered in the treatment of several diseases. In this context, our study might alert health authorities regarding the potential consequences of these treatments on fertility and health futures generations.