No description available.

Assessment of freshness and quality of meat and fish is a major activity of both food regulatory agencies and the food industry. Various methods are used for measuring fish and meat quality, each with its particular advantages and limitations. However, methods based on monitoring the products of proteolysis have received relatively little attention. The objective of the present study was to identify specific protein and peptide products of proteolysis as indicators of freshness and quality during chilled storage of fresh fish and meat. / Samples of meat and fish were subjected to chilled storage; at intervals of 0, 2, 4, 8, 12 and 16 days, samples were subjected to protein and peptide extraction, and separation of individual sarcoplasmic and myofibrillar proteins by SDS and native electrophoresis. These extracted proteins along with acid soluble nitrogen (ASN) were separated by RP-HPLC, fractions were collected and identified by electrospray ionization mass spectrometry (ESI-MS). / RP-HPLC separated at least thirty fractions from the ASN extract of fresh fish. ESI-MS revealed the presence of at least twenty-five polypeptides with molecular weights (MW) ranging from 2 to 32 kDa. The relative area % of the polypeptides with MW 32.8 kDa and 42.8 kDa decreased during the storage while polypeptides of MW of 10.9 kDa and 16.7 kDa increased during storage. Changes in polypeptides of MW 12, 34.2 and 42.8 kDa was also observed. The sarcoplasmic protein extracted from ground and whole meat contained at least 12 polypeptides with MW ranging from 11 to 42 kDa. The relative area % of polypeptide of MW of 35.7 kDa decreased during storage. The results suggest that changes in proteins and polypeptides of MW 10.9, 12, 16.7, 32.8, 34.2 and 42.88 kDa in fish and 35.7 kDa in meat could serve as indicators of spoilage.

The primary objective of this study was to investigate the use of water table management (WTM) as a microbial delivery system for in-situ bioaugmentation of contaminated soils. In addition, the use of Rhizobium ( R.) for PCB degradation in soils was evaluated. / First, the presence and isolation of a variety of strains of Rhizobium meliloti was demonstrated using plant nodulation tests on alfalfa plants in soils that were contaminated for over 15 years with PCBs, PAHs and heavy metals. Next, R. meliloti, strain A-025, was selected based on its membrane (hydrophobicity, adhesion) characteristics and its potential to transform PCBs. This strain was delivered and implanted in sod columns, 200 mm in diameter x 1000 mm in length, packed with a sandy loam soil, using surface and subirrigation. The results of this study showed that subirrigation led to a higher number and a more uniform distribution of the bacterial cells in the soil at 60, 300, 500, and 700 mm depths, than surface irrigation. / In a different setup, similar column were packed with a PCB contaminated soil. These soil columns were bioaugmented with three bacterial cultures, i.e., R. meliloti (strain A-025), Comomonas testosteroni (strain B-356) and an indigenous bacterial consortium using subirrigation. The results indicated that bioaugmentation of the PCB contaminated soil was possible by using subirrigation. Bioaugmentation with the indigenous culture was observed to be more effective in the biodegradation of PCBs than with A-025 and B-356 cultures at 140 and 340 mm depths. However, at 590 mm depth, bioaugmentation with strain A-025 was observed to be better than the other treatments. Sequential aerobic and anaerobic cycles appear to be of significance for effective dechlorination of PCB congeners to lower chlorinated congeners. / In a separate exploratory study, the rhizospheric effects of alfalfa plants on R. meliloti for PCB depletion were investigated. The results suggest that the growth of alfalfa plants and bioaugmentation of soil with R. meliloti, strain A-025, increased the depletion of PCB congeners in the soil as compared to bioaugmentation alone. In other preliminary studies, the results showed that the presence of PCBs in a sandy loam soil increases the filtration of bacterial cells. Also, soil type and the presence of PCBs affected water infiltration, moisture, and hardness of the soil. Furthermore, water table management system along with bioaugmentation of soil columns with R. meliloti, strain A-025, decreased the concentration of atrazine by 31% during anaerobic and aerobic cycles and reduced the concentration of nitrate by 87% and 78% in the absence and presence of atrazine, respectively, in the drainage water. / The overall results of this work indicate that water table management (subirrigation) can be used for bioaugmentation of contaminated soils. Also, use of R. meliloti may prove to be an interesting option for soils contaminated with PCBs, atrazine and nitrate.

Subsurface peat decomposition, through CO2 production, was analyzed in laboratory and field experiments in a bog, poor fen, and beaver pond margin at Mer Bleue, Ottawa. Intact core samples in 10 cm depth intervals from 5--45 cm below the surface of each site were incubated in the laboratory. Treatments involved aerobic and anaerobic conditions at 4 and 14°C. Field measurements of CO2 flux were made by a static chamber technique. / Incubation results indicate modelled CO2 surface fluxes differ amongst wetlands. Aerobic CO2 modelled surface fluxes at 4°C were 2.3, 3.1 and 4.2 g CO2 m-2 d-1 for the bog, the beaver pond margin, and the poor fen, respectively. On average, aerobic production rates from peat cores with field moisture conditions were 11.7 times larger than anaerobic production rates. A mean Q10 of 2.3 defined the role of temperature. Differences among the peat samples were related to degree of decomposition, and differences among the sites were related to trophic status and nutrient availability. / A model of CO2 production was constructed and validated against field fluxes of CO2. The model provides a good prediction (r 2 = 0.72) of subsurface peat decomposition. The results suggest that warmer peat temperatures and lowered water tables, as predicted by climate change scenarios, will increase surface CO2 fluxes due to peat decomposition.

No description available.

Physiological and compositional changes in Pseudomonas aeruginosa (ATCC 9027) were monitored during, growth on various petroleum compounds in a chemically-defined medium. Growth of P. aeruginosa was observed when furnace oil, kerosene, aviation fuel, light crude oil and hexadecane were used as carbon and energy sources. A variable and extended lag period before active growth was achieved was characteristic of petroleum-grown cells as compared to glucose-grown cells. Growth on the petroleum hydrocarbons, compared with that on glucose, resulted in changes in cell lipid composition, outer membrane proteins, cell-surface hydrophobicity, surface-tension, and pH changes in the growth medium during transition from early to late-log phase. Cell composition and physiology of cells grown in the petroleum mixtures varied due to differences in the chemical composition of the material. Production of an exopolymer (characterized as a peptidoglycolipid) was associated with petroleum-grown cells but not with glucose-grown cells. The above differences illustrate some of the dynamic and physiological and biochemical changes the microorganism undergoes to access its hydrophobic carbon and energy source.

In 1990, an oil recycling plant situated in Hammarsdale, South Africa, was decommissioned and a decision was taken by management to rehabilitate the site in preparation for resale. The heavily impacted area covered over two hecatares and oil contamination penetrated soil to depths in excess of three metres, making excavation and removal of the soil very expensive. The options for remediation of the site were limited. No facility for incineration of contaminated soil exists in South Africa, and landfilling was not permitted. The emphasis in developing a remediation strategy, therefore, focussed upon the possibility of in situ remediation with minimal excavation of soil. This study, the first of its kind in South Africa, was subsequently initiated to assess the feasibility of this approach, the results of which would underpin a full-scale cleanup programme. The development of such a strategy involved four key stages of work : (1) a comprehensive site investigation to evaluate and fully understand the particular problems at the site; (2) treatability studies to determine the potential for biological treatment of the contaminated soil and the optimisation of such treatments, particularly in terms of time and cost; (3) the testing of some of the more effective treatments on a pilot-scale; and (4) recommendations for full-scale bioremediation of the contaminated site. various conditions unique to South Africa had to be considered at each stage viz. the lack of funds and remediation experience, which created numerous problems and emphasised the requirement for a simple, "low-tech" approach. Site investigations revealed that in situ remediation may be possible due to the high permeability of the sandy soils and low concentrations of heavy metals. Laboratory experiments also showed that a mixed association of indigenous microorganisms was present which, once stimulated by nutrient supplementation at C:N:P, ratios of between 10:1:1 and 20:1:1, was capable of degrading total petroleum hydrocarbons at an average rate of 11% week -1. Further experimentation, aimed at reducing the cost of remediation and improving the soil quality, focussed on the efficacy of oil solubilisers, a soil ameliorant (composted pine-bark), indigenous fungi and higher plants in the remedial process. Three commercial surfactants (Arkopal N-050, N-060 and E2491) and one natural solubiliser (soybean lecithin) were tested for their biotoxicity, solubilisation and biodegradability at various concentrations (0.01 - 1.0%). Formulation E2491 was able to support a microbial population and was selected as the preferred commercial surfactant if soil washing was to be recommended; however, lecithin was considered to be more useful in situ because of its localised solubilising effect, biological origin and nutritional contribution. The use of fungi was of particular interest in addressing the persistent organic compounds, such as the heavy fractions of oil, for which bacterial remediation methods have been slow or ineffective. While it was not possible, however, to demonstrate in the laboratory that the indigenous fungi contributed significantly towards the degradation of the contaminating oil, the basic trends revealed that the fungal component of the indigenous microbial population was readily stimulated by the addition of nutrient supplements. The bulking-up process was also a success and additional exploratory work was proposed in the form of a larger scale composting design. Finally, the potential for using higher plants and 20% (v / v) composted pinebark (in addition to nutrients) to increase the microbial degradation of the contamination was investigated in both greenhouse and field plot studies. Greenhouse investigations employed soybeans which were postulated to have soil quality and cost benefits. However, although the soybeans were found to significantly enhance the remedial process, the complex soil-contaminant- plant interactions gave rise to strange nutritional effects and, in some cases, severe stunting. In contrast, the field studies employed grasses that had previously established on the site and which ultimately demonstrated a better tolerance for the contaminated conditions. Scanning electron microscopy revealed that there were considerable differences between the root tips of soybean plants which had been grown in contaminated soil and those which had been grown in uncontaminated soil. It was concluded that toxicity symptoms, which are readily observed in the root, could be used as an early indicator for determining the suitability of vegetation for remediation purposes. In both instances, despite the differences, the addition of composted pine-bark and nutrients (nitrogen and phosphorus) resulted in total petroleum hydrocarbon reductions of >85%, illustrating the benefits of plant establishment and oxygen availability. The need to link results from laboratory or pilot-scale experiments to achieve reliable predictions of field-scale behaviour was an essential component of this research. The results of the field study provided evidence, similar to that found in the pot trial, of the accelerated disappearance of organic compounds in the rhizosphere. All experiments incorporated parallel measurements of hydrocarbon residues, microbial activity and pH changes in the contaminated soil, the results of which strongly supported the argument that biodegradation was the dominant component of the remediation process. Thus, after consideration of the significant interactions which dominated the study (time-contaminant-nutrient; time-contaminant-pine-bark; and time-contaminant- pine-bark-plant), it was clear that, aside from these limiting factors, little should preclude the in situ bioremediation of the impacted soil. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1996.

1,2-Dichloroethane (1,2-DCA), a short chain chlorinated aliphatic compound, is one of the most hazardous toxic pollutant of soil and groundwater, with an annual production in excess of 5.44 × 109 kg. The major concern over soil contamination with 1,2-DCA stems largely from health risks. Owing to their toxicity, persistence and potential for bioaccumulation, there is a growing interest in technologies for their removal. Many sites are, however, co-contaminated with a complex mixture of 1,2-DCA and heavy metal contaminants. Co-contaminated environments are considered difficult to remediate because of the mixed nature of the contaminants and the fact that the two components often must be treated differently. Therefore, the objective of this study was to evaluate the aerobic biodegradation of 1,2-DCA by autochthonous microorganisms in soil co-contaminated with 1,2-DCA and heavy metals, namely; arsenic (As3+), cadmium (Cd2+), mercury (Hg2+) and lead (Pb2+), via a direct and quantitative measurement of the inhibitory effects of heavy metals in a microcosm setting. Effects of various metal concentrations and their combinations were evaluated based on the following: (i) degradation rate constants; (ii) estimated minimal inhibitory concentrations (MICs) of metals; (iii) concentrations of heavy metals that caused biodegradation half-life doublings (HLDs); and (iv) heavy metal concentrations that caused a significant effect on biodegradation (> 10% increase in t½ of 1,2-DCA). The effects of biostimulation, bioaugmentation and the addition of treatment additives on the biodegradation process were evaluated. The presence of heavy metals was observed to have a negative impact on the biodegradation of 1,2-DCA in both clay and loam soil samples, with the toxic effect being more pronounced in loam soil for all heavy metal concentrations except for Hg2+, after 15 days. Heavy metal concentrations of 75 mg/kg As3+, 840 mg/kg Hg2+, and 420 mg/kg Pb2+, resulted in 34.24%, 40.64%, and 45.94% increases in the t½ of 1,2-DCA, respectively, in loam soil compared to clay soil. Moreover, the combination of four heavy metals in loam soil resulted in 6.26% less degradation of 1,2-DCA compared to clay soil, after 15 days. Generally, more than 127.5 mg/kg Cd2+, 840 mg/kg Hg2+ and 420 mg/kg of Pb2+ was able to cause a > 10% increase in the t½ of 1,2-DCA in clay soil, while less than 75 mg/kg was required for As3+. An increased reduction in 1,2-DCA degradation was observed with increasing concentration of the heavy metals. In clay soil, a dose-dependant relationship between k1 and metal ion concentrations in which k1 decreased with higher initial metal concentrations was observed for all the heavy metals tested except Hg2+. Ammonium nitrate-extractable fractions of bioavailable As3+ and Cd2+ concentrations varied greatly, with approximately < 2.73% and < 0.62% of the total metal added to the system being bioavailable, respectively. Although bioavailable heavy metal fractions were lower than the total metal concentration added to the system, indigenous microorganisms were sensitive to the heavy metals. Biostimulation, bioaugmentation and amendment with treatment additives were all effective in enhancing the biodegradation of 1,2-DCA in the co-contaminated soil. In particular, biostimulation with fertilizer, dual-bioaugmentation and amendment with CaCO3 were most efficient in enhancing 1,2-DCA degradation resulting in 41.93%, 59.95% and 51.32% increases in the degradation rate constant of 1,2-DCA in the As3+ co-contaminated soil, respectively, after 20 days. Among all the treatments, dualbioaugmentation produced the highest 1,2-DCA degrading population of up to 453.33 × 107 cfu/ml in the Cd2+ co-contaminated soil. On comparison of the As3+ and Cd2+ co-contaminated soil undergoing either biostimulation or dual-bioaugmentation, similarity in the denaturing gradient gel electrophoresis (DGGE) banding patterns was observed. However, the banding patterns for the different bioremediation options demonstrated a difference in bacterial diversity between the fertilized and dual-bioaugmented samples. DGGE profiles also indicate that while numerous bands were common in the fertilized co-contaminated soils, there were also changes in the presence and intensity of bands due to treatment and temporal effects. Dehydrogenase and urease activities provided a more accurate assessment of the negative impact of heavy metals on the indigenous soil microorganisms, resulting in up to 87.26% and 69.58% decreases in activities, respectively. In both the biostimulated and bioaugmented soil microcosms, dehydrogenase activity appeared biphasic with an initial decrease followed by an increase in the treated soils over time. Results from this study provide relevant information on some alterations that could be introduced to overcome a critical bottle-neck of the application of bioremediation technology. In conclusion, the bioremediation strategies adopted in this study may be used as a rational methodology for remediation of sites co-contaminated with 1,2-DCA and heavy metals, subject to a thorough understanding of the microbial ecology and physico-chemical parameters of the site. / Thesis (M.Sc.)-University of KwaZulu-Natal, 2009.

No description available.

No description available.