Gram-negative bacterial cells are surrounded by a cell membrane which protects the cell and controls the transport of nutrients and waste products in and out of the cells at a fast rate. This rapid transport of nutrients and wastes through the cell membrane is made possible by channel proteins called porins. Various types of porins present in the cell membrane have specific functions depending on their selectivity towards different nutrients, and channel proteins selective towards water are called aquaporins. These proteins restrict the passage of all entities except water molecules and they provide a fast transport rate of water molecules at 109 molecules/second per channel. The high selectivity of porins has led to their incorporation into synthetic systems, and one example is the addition of porins to separations membranes in order to enhance their performance in terms of selectivity and permeability, in a field called biomimetics. The concept of incorporating aquaporins into synthetic membranes has been studied for the last 10 years in order to enhance the water permeability and selectivity of membranes for water purification; however, there are still limitations such as high costs, difficulties in fabrication of aquaporins, their alignment into synthetic membrane assembly, low stability, and limitations on number of aquaporin molecules that can be introduced into synthetic membranes limit their applicability. In recent years, concurrent with the work on aquaporin-based biomimetic membranes, there has been an increase in the study of synthesizing molecules with similar structure-function relationships of aquaporins. These artificial channels attempt to mimic the high-water permeability and selectivity of aquaporins, while being synthesized using simple chemistry, being solvent compatible, and requiring less space on the membrane surface which helps to incorporate more channels into the membrane assembly. The objectives of this study were to first incorporate aquaporins into synthetic nanofiltration membranes without chemical alteration them to prevent flattening or denaturing of aquaporins; then, the second objective was to install functional groups on aquaporins and align them in the direction of water flow; lastly, the third objective was to synthesize artificial channels in order to overcome the issues with aquaporin stability, alignment, and efficient packing of water channels onto the membrane surface. For the first objective, aquaporins were treated with a polysaccharide, gum Arabic, and incorporated into an amphiphilic polymer, polyvinyl alcohol with alkyl side chains (PVA-alkyl), in order to simulate the natural housing of lipid bilayer for aquaporins and to protect them from denaturing. Long alkyl chains provided the hydrophobic component, while PVA provided the hydrophilic component of the amphiphilic polymer. Membranes modified with aquaporins displayed lower flux declines and higher flux recoveries after reverse flow filtration, along with improved rejection values for both protein and salt solutions as compared to PBI and PBI-PVA-alkyl membranes. However, there was leakage of ions between channels. Therefore, in order to improve the rejection of protons, ions and other impurities, the channels were aligned with the direction of water flow. Functional groups were installed on Aquaporins using site-directed mutagenesis for covalent attachment to the polymer matrix so that the proteins could be immobilized to the membranes and aligned in the direction of the flow. Aquaporin constructs were modified to bear affinity tags or unique amino acids at the N-terminus of the aquaporin molecule, which was used to facilitate directional immobilization. Each aquaporin monomer was modified with a unique amino acid Cys group at the N-terminus right after the first Met, and due to the aquaporin tetrameric nature, these Cys groups became four anchors for attachment. The presence of these four Cys anchors per aquaporin tetramer was used to attach on the membrane surface in alignment with the feed water flow direction. Membranes modified with mutated aquaporins showed consistently higher salt rejection values of ~70% irrespective of feed concentration, along with higher flux recoveries and lower flux declines. Commercial NF-270 membranes provide a monovalent salt (NaCl) rejection of ~50% and divalent salt (MgCl2) rejection of 97%. Also, approximate coverage of membrane surface with attached aquaporins was calculated using simulation studies. Simulation studies showed that immobilized aquaporins with PVA-alkyl provided a diffusion rate equivalent to 64% coverage on the membrane surface. This showed that aquaporins didn’t cover the entire surface area of the membrane. However, immobilized aquaporins were responsible for the rejection of a portion of ions passing through the membrane. In order to overcome the limitations of aquaporin incorporation into polymer membranes, artificial organic frameworks were added as surface modification on PBI membranes. Organic frameworks were synthesized as derivatives of hybrid bisamides. The series of bisamides 1-4 consist of 6-amino-pyridine-2-dicarboxylic acid, 6-hydroxymethyl-pyridine-2-carboxylic acid and ethylenediamine, trimethylenediamine, putrescine, and cadaverine depending on the length of carbon chain. These frameworks are amphiphilic in nature and have strong chemical attachment due to the presence of amines and carboxylic acids into each building block. These molecules were introduced into the membrane matrix using carbodiimide chemistry. FTIR results showed the attachment of these bisamide molecules onto the surface of a modified PBI membrane. Also, modified membranes showed a reduced molecular weight cut off (MWCO) for neutral organic molecules. Overall, membranes modified with aquaporins have shown a potential to provide consistently high salt rejections with increasing feed solutions. Also, preliminary results have shown that bisamide molecules can be attached onto the membrane surface as organic frameworks and have a potential to be an alternative for aquaporins based biomimetic membranes.

<p>In the research presented in this licentiate thesis the surface specific technique Vibrational Sum Frequency Spectroscopy, VSFS, combined with the Langmuir trough has been utilized to investigate Langmuir monolayers and Langmuir-Blodgett (LB) deposited mono- and bilayers of phospholipids. Their molecular structure, stability, and hydration were probed to gain additional understanding of important properties aiming at facilitating the use of such layers as model systems for biological membranes.</p><p>VSFS was applied to <em>in situ</em> studies of the degradation of Langmuir monolayers of 1,2-diacyl-phosphocholines with identical C-18 chains having various degrees of unsaturation. The time-dependent change of the monolayer area at constant surface pressure as well as the sum frequency intensity of the vinyl-CH stretch at the C=C double bonds were measured to monitor the degradation. It was shown that a rapid degradation of the monolayers of unsaturated phospholipids occurred when exposed to the laboratory air compared to the fully saturated lipid, and that the degradation could be inhibited by purging the ambient air with nitrogen. The degradation was attributed to oxidation mediated by reactive species in the air.</p><p>The molecular structure and order of Langmuir monolayers of 1,2-distearoyl-phosphocholine (18:0 PC) and their hydrating water were investigated at different surface pressures using VSFS. The spectroscopic data indicated a well ordered monolayer at all surface pressures with a more intense signal at higher pressures attributed to the subsequent increase of the number density and more ordered lipid molecules due to the tighter packing. Water molecules hydrating the headgroups or being in contact with the hydrophobic parts were observed and distinguished by their vibrational frequencies, and found to have different average orientations.</p><p>Additionally, monolayers of 18:0 PC, its fully deuterated analogue, and 1,2-distearoyl-phosphoserine (18:0 PS) were Langmuir-Blodgett (LB) deposited on CaF₂ substrates and VSFS was used to investigate the structure and order of the films as well as the hydrating water. The CH-region, water region, and lower wavenumber region containing phosphate, ester, carboxylic acid, and amine signals were probed to obtain a complete picture of the molecule. The data indicates that all deposited monolayers formed a well ordered and stable film and the average orientation of the aliphatic chains was determined using the antisymmetric methyl stretch.</p> / <p>I forskningen som presenteras i denna licentiatavhandling har den ytspecifika vibrationssumfrekvensspektroskopin, VSFS, använts tillsammans med Langmuirtråget för att studera Langmuir-monolager och Langmuir-Blod-gett (LB) deponerade monolager och bilager av fosfolipider. För att utvidga förståelsen av egenskaper som är viktiga för att underlätta användandet av dem som modellsystem för biologiska membran undersöktes såväl deras molekylära struktur som stabilitet och hydratisering.</p><p>VSFS användes för att genomföra <em>in situ</em>-studier av nedbrytningen av Langmuir-monolager av 1,2-diacyl-fosfokoliner med identiska 18 kolatomer långa sidokedjor med varierande antal omättade kol-kol-bindningar. För att övervaka nedbrytningen mättes såväl den tidsberoende förändringen av monolagernas area vid konstant yttryck som sumfrekevensintensiteten från dubbelbindningarnas CH-vibration. När monolagerna bestående av omättade fosfolipider utsattes för laboratorieluften bröts de ner hastigt jämfört med det helt mättade monolagret. Denna nedbrytning som sannolikt orsakades av reaktiva ämnen i luften kunde inhiberas fullständigt genom att ersätta den omgivande luften med kvävgas.</p><p>Den molekylära strukturen och ordningen hos Langmuir-monolager av 1,2-distearoyl-fosfokolin (18:0 PC) och deras hydratiseringsvatten undersöktes vid olika yttryck med VSFS. Den spektroskopiska datan visar att monolagerna är välordnade vid alla yttryck samt att sumfrekvenssignalens styrka ökar med ökande yttryck på grund av såväl det större antalet molekyler per ytenhet som den högre ordningen då molekylerna packas tätare. Vattenmolekyler som hydratiserar huvudgrupperna eller är i kontakt med hydrofoba delar och har olika medelorientering observerades och kunde identifieras genom sina vibrationsfrekvenser.</p><p>Vidare deponerades monolager av 18:0 PC, dess fullt deuterade analog och 1,2-distearoyl-fofsfoserin (18:0 PS) på substrat av CaF₂ och VSFS användes för att undersöka filmernas struktur och ordning såväl som hydratiseringsvattnet. CH- och vattenregionerna samt lågvågtalsområdet som innehåller fosfat-, ester-, karboxylsyra- och aminsignaler undersöktes för att få en fullständig bild av den molekylära strukturen. Data visar att alla deponerade monolager bildade en välordnad och stabil film och kolvätekedjornas medelorientering bestämdes med hjälp av signalen från den antisymmetriska metylvibrationen.</p> / QC 20100924

abstract: Biological membranes are critical to cell sustainability by selectively permeating polar molecules into the intracellular space and providing protection to the interior organelles. Biomimetic membranes (model cell membranes) are often used to fundamentally study the lipid bilayer backbone structure of the biological membrane. Lipid bilayer membranes are often supported using inorganic materials in an effort to improve membrane stability and for application to novel biosensing platforms. Published literature has shown that a variety of dense inorganic materials with various surface properties have been investigated for the study of biomimetic membranes. However, literature does not adequately address the effect of porous materials or supports with varying macroscopic geometries on lipid bilayer membrane behavior. The objective of this dissertation is to present a fundamental study on the synthesis of lipid bilayer membranes supported by novel inorganic supports in an effort to expand the number of available supports for biosensing technology. There are two fundamental areas covered including: (1) synthesis of lipid bilayer membranes on porous inorganic materials and (2) synthesis and characterization of cylindrically supported lipid bilayer membranes. The lipid bilayer membrane formation behavior on various porous supports was studied via direct mass adsorption using a quartz crystal microbalance. Experimental results demonstrate significantly different membrane formation behaviors on the porous inorganic supports. A lipid bilayer membrane structure was formed only on SiO2 based surfaces (dense SiO2 and silicalite, basic conditions) and gamma-alumina (acidic conditions). Vesicle monolayer adsorption was observed on gamma-alumina (basic conditions), and yttria stabilized zirconia (YSZ) of varying roughness. Parameters such as buffer pH, surface chemistry and surface roughness were found to have a significant impact on the vesicle adsorption kinetics. Experimental and modeling work was conducted to study formation and characterization of cylindrically supported lipid bilayer membranes. A novel sensing technique (long-period fiber grating refractometry) was utilized to measure the formation mechanism of lipid bilayer membranes on an optical fiber. It was found that the membrane formation kinetics on the fiber was similar to its planar SiO2 counterpart. Fluorescence measurements verified membrane transport behavior and found that characterization artifacts affected the measured transport behavior. / Dissertation/Thesis / Ph.D. Chemical Engineering 2011

In the research presented in this licentiate thesis the surface specific technique Vibrational Sum Frequency Spectroscopy, VSFS, combined with the Langmuir trough has been utilized to investigate Langmuir monolayers and Langmuir-Blodgett (LB) deposited mono- and bilayers of phospholipids. Their molecular structure, stability, and hydration were probed to gain additional understanding of important properties aiming at facilitating the use of such layers as model systems for biological membranes. VSFS was applied to in situ studies of the degradation of Langmuir monolayers of 1,2-diacyl-phosphocholines with identical C-18 chains having various degrees of unsaturation. The time-dependent change of the monolayer area at constant surface pressure as well as the sum frequency intensity of the vinyl-CH stretch at the C=C double bonds were measured to monitor the degradation. It was shown that a rapid degradation of the monolayers of unsaturated phospholipids occurred when exposed to the laboratory air compared to the fully saturated lipid, and that the degradation could be inhibited by purging the ambient air with nitrogen. The degradation was attributed to oxidation mediated by reactive species in the air. The molecular structure and order of Langmuir monolayers of 1,2-distearoyl-phosphocholine (18:0 PC) and their hydrating water were investigated at different surface pressures using VSFS. The spectroscopic data indicated a well ordered monolayer at all surface pressures with a more intense signal at higher pressures attributed to the subsequent increase of the number density and more ordered lipid molecules due to the tighter packing. Water molecules hydrating the headgroups or being in contact with the hydrophobic parts were observed and distinguished by their vibrational frequencies, and found to have different average orientations. Additionally, monolayers of 18:0 PC, its fully deuterated analogue, and 1,2-distearoyl-phosphoserine (18:0 PS) were Langmuir-Blodgett (LB) deposited on CaF2 substrates and VSFS was used to investigate the structure and order of the films as well as the hydrating water. The CH-region, water region, and lower wavenumber region containing phosphate, ester, carboxylic acid, and amine signals were probed to obtain a complete picture of the molecule. The data indicates that all deposited monolayers formed a well ordered and stable film and the average orientation of the aliphatic chains was determined using the antisymmetric methyl stretch. / I forskningen som presenteras i denna licentiatavhandling har den ytspecifika vibrationssumfrekvensspektroskopin, VSFS, använts tillsammans med Langmuirtråget för att studera Langmuir-monolager och Langmuir-Blod-gett (LB) deponerade monolager och bilager av fosfolipider. För att utvidga förståelsen av egenskaper som är viktiga för att underlätta användandet av dem som modellsystem för biologiska membran undersöktes såväl deras molekylära struktur som stabilitet och hydratisering. VSFS användes för att genomföra in situ-studier av nedbrytningen av Langmuir-monolager av 1,2-diacyl-fosfokoliner med identiska 18 kolatomer långa sidokedjor med varierande antal omättade kol-kol-bindningar. För att övervaka nedbrytningen mättes såväl den tidsberoende förändringen av monolagernas area vid konstant yttryck som sumfrekevensintensiteten från dubbelbindningarnas CH-vibration. När monolagerna bestående av omättade fosfolipider utsattes för laboratorieluften bröts de ner hastigt jämfört med det helt mättade monolagret. Denna nedbrytning som sannolikt orsakades av reaktiva ämnen i luften kunde inhiberas fullständigt genom att ersätta den omgivande luften med kvävgas. Den molekylära strukturen och ordningen hos Langmuir-monolager av 1,2-distearoyl-fosfokolin (18:0 PC) och deras hydratiseringsvatten undersöktes vid olika yttryck med VSFS. Den spektroskopiska datan visar att monolagerna är välordnade vid alla yttryck samt att sumfrekvenssignalens styrka ökar med ökande yttryck på grund av såväl det större antalet molekyler per ytenhet som den högre ordningen då molekylerna packas tätare. Vattenmolekyler som hydratiserar huvudgrupperna eller är i kontakt med hydrofoba delar och har olika medelorientering observerades och kunde identifieras genom sina vibrationsfrekvenser. Vidare deponerades monolager av 18:0 PC, dess fullt deuterade analog och 1,2-distearoyl-fofsfoserin (18:0 PS) på substrat av CaF2 och VSFS användes för att undersöka filmernas struktur och ordning såväl som hydratiseringsvattnet. CH- och vattenregionerna samt lågvågtalsområdet som innehåller fosfat-, ester-, karboxylsyra- och aminsignaler undersöktes för att få en fullständig bild av den molekylära strukturen. Data visar att alla deponerade monolager bildade en välordnad och stabil film och kolvätekedjornas medelorientering bestämdes med hjälp av signalen från den antisymmetriska metylvibrationen. / QC 20100924

Ces travaux de thèse concernent le développement d'une biopuce à membranes permettant de réincorporer de manière fonctionnelle une protéine transmembranaire de la famille des récepteurs couplés aux protéines G (RCPG), CXCR4, dans une bicouche lipidique attachée et espacée sur un substrat d'or par pilotis peptidiques (pep-tBLM), sous un format miniaturisé et parallélisé. Le peptide pilotis utilisé, P19-4H, possède une cystéine en position N-terminale pour son greffage covalent sur la surface d'or et quatre résidus Histidine en position C-terminale pour l'attachement par chélation, en présence de Nickel, de protéoliposomes réintégrant CXCR4. La synthèse de cette protéine s'effectue par expression acellulaire sous forme de protéoliposomes, dans une composition lipidique adaptée et en présence d'un lipide chélatant, le DOGS-NTA, à 2% de la quantité molaire totale des lipides. Le peptide AH, un peptide fusogène, est utilisé dans une dernière étape pour fusionner les protéoliposomes attachés. La caractérisation approfondie des protéoliposomes et l'optimisation des conditions expérimentales ont permis d'aboutir à l'attachement robuste des protéoliposomes avec une densité lipidique suffisante pour leur fusion par le peptide AH et la formation d'une pep-tBLM réintégrant CXCR4. Des études de recouvrement de fluorescence après photoblanchiment (FRAP) ont montré que la pep-tBLM réinsérant CXCR4 était fluide, homogène et continue, avec un coefficient de diffusion de 2.10-7 cm2/s. Des études d'interaction entre CXCR4 et un ligand antagoniste, le T22, ont révélé que la protéine s'insère dans la pep-tBLM de manière fonctionnelle et orientée. Le processus de formation de la pep-tBLM a été miniaturisé par microstructuration du support consistant à recouvrir la surface d'or de polystyrène puis à former des micropuits exposant la surface d'or en leur fond. Le peptide P19-4H a été déposé de manière contrôlée dans les micropuits à l'aide d'un robot de dépôt pour former des plots de pep-tBLM intégrant CXCR4. La fonctionnalité de CXCR4 réinsérée dans ces plots de membranes a été attestée par des études d'interaction avec son ligand T22. L'ensemble des étapes de formation, d'optimisation et de miniaturisation des pep-tBLM a été suivi, visualisé et caractérisé en temps réel et sans marquage par la technique d'imagerie par résonance plasmonique de surface (SPRi). La technologie « TransMembraChip » développée au cours de cette thèse représente une méthode de choix pour la réincorporation et l'étude fonctionnelle de protéines transmembranaires dans une composition lipidique adaptée. Les protéines transmembranaires, en particulier les RCPG, représentent des cibles thérapeutiques intéressantes. Ainsi, dans le cadre de la recherche de candidats médicaments pour le traitement de pathologies impliquant des protéines transmembranaires, cette nouvelle génération de biopuce à membranes constitue un outil prometteur adapté au criblage de ligands agonistes ou antagonistes de ces protéines / This thesis presents the development of a membrane biochip allowing to functionally reincorporate a transmembrane protein of the G-protein coupled receptor (GPCR) family, CXCR4, in a peptide-tethered bilayer lipid membrane (pep-tBLM), in a miniaturized and parallelized format. The peptide tether used, P19-4H, possesses a cysteine in its N-terminal extremity for covalent grafting onto the gold surface and four Histidine residues in its C-terminal extremity for attachment of proteoliposomes integrating CXCR4 by metal-chelate interaction in the presence of nickel. The synthesis of CXCR4 was carried out by cell-free expression in the form of proteoliposomes, in a suitable lipid composition and in the presence of a chelating lipid, DOGS-NTA, at 2% molar ratio. The AH peptide, a fusogenic peptide, was employed in a last step to fuse the attached proteoliposomes. The thorough characterization of proteoliposomes and the optimization of experimental conditions led to the robust attachment of proteoliposomes with sufficient lipid density to perform their fusion by the AH peptide and the formation of a pep-tBLM integrating CXCR4. Fluorescence recovery after photobleaching (FRAP) studies have shown that the pep-tBLM reinserting CXCR4 was fluid, homogeneous and continuous, with a diffusion coefficient of 2 x 10-7 cm2/s. Ligand binding studies between CXCR4 and T22, an antagonist, revealed that the protein was functional and well-oriented in the peptBLM. The formation process of the pep-tBLM was miniaturized by support microstructuration, consisting in covering the gold surface with polystyrene and then, forming microwells exposing the gold surface at their bottom. The P19-4H peptide was spotted in a controlled manner into the microwells to form microspots of pep-tBLM incorporating CXCR4. The functionality of CXCR4 reinserted into these membrane microspots was confirmed by T22 ligand binding studies. All the steps of formation, optimization and miniaturization of the pep-tBLM were monitored, visualized and characterized by surface plasmon resonance imaging (SPRi), a real time and label-free technique for the detection of interactions. The "TransMembraChip" technology developed in this work represents a method of choice for the reincorporation and functional study of transmembrane proteins in a suitable lipid composition. Transmembrane proteins, particularly GPCRs, form interesting therapeutic targets. Thus, in the context of pharmaceutical research of drug candidates for the treatment of pathologies involving transmembrane proteins, this new generation of membrane biochip is a promising tool for screening agonist or antagonist ligands of these proteins

Deux membres des Visinin-Like Proteins (VILIPs), VILIP-1 et VILIP-3, ont été étudiés à l'aide de deux modèles membranaires biomimétiques, les monocouches de Langmuir couplées à la microscopie à l'angle de Brewster (BAM) et les bicouches lipidiques supportées (SLB) visualisées par microscopie à force atomique (AFM). A l'aide de ces deux modèles, nous avons pu montrer que les VILIPs, protéines N-myristoylées et possédant quatre mains-EF, ont une cinétique d'interaction membranaire qui augmente en présence de calcium, probablement dû à la présence d'un mécanisme type « switch calcium-myristoyle ». En revanche, l'utilisation de protéines mutées, non myristoylées, a révélé que la présence du groupement myristoyle n'est pas le seul facteur nécessaire pour que ces protéines interagissent avec la membrane. La présence d'une région N-terminale riche en résidus lysine permettrait à cette famille de protéines d'interagir via des interactions électrostatiques avec des membranes possédant des lipides anioniques et plus particulièrement du phosphatidylinositol-4,5-biphosphate (PIP2). La présence d'un faible pourcentage de ce phosphoinositide dans la membrane est responsable de l'accélération de la vitesse d'interaction membranaire des VILIPs, ce qui est cohérent avec leur location subcellulaire in cellulo. Enfin, un nouveau modèle membranaire de bicouches lipidiques suspendues sur des pilotis peptidiques (pep-tBLM) greffés sur une surface d'or a été ensuite développé. La méthode présentée dans ce manuscrit permet de créer des tBLM, de la composition lipidique souhaitée, en utilisant un peptide pilotis spécifiquement conçu durant cette thèse. La création de ce modèle a été suivie en temps réel par imagerie de résonance plasmonique de surface (SPRi) et caractérisé par AFM et par microscopie de fluorescence / Two members of the Visinin-Like Proteins (VILIPs) family, VILIP-1 and VILIP-3, have been studied using two biomimetic membrane models, the Langmuir monolayers coupled to the Brewster angle microscopy (BAM) and the supported lipid bilayers (SLB) visualized by atomic force microscopy (AFM). Using these two models, we have shown that VILIPs, N-myristoylated proteins with four EF-hands, have a membrane interaction kinetic that increases in the presence of calcium, probably due to the presence of a "calcium-myristoyl switch" mechanism. Tn contrast, the use of unmyristoylated proteins revealed that the presence of the myristoyl group is not the only factor necessary for the interaction of these proteins with the membrane. The presence of a N- terminal lysine-rich region allows this family of proteins to interact through electrostatic interactions with membranes containing anionic lipids and particularly the phosphatidylionisitol-4,5-biphosphate (PIP2). The presence of a small percent of phosphoinositide in the membrane is responsible for the acceleration of the binding rate of VILIPs, which is consistent with their subcellular location in cellulo. Finally, a new membrane model of peptide tethered lipid bilayers (pep-tBLM) grafted onto a gold surface was developed. The method described in this manuscript allows the formation of tBLM, containing the desired lipid composition, by using a home-designed peptide as tether. The formation is followed in real time by surface plasmon resonance imaging (SPRi) and has been characterized by AFM and fluorescence microscopy