Neonatal Sprague-Dawley rat pups were assigned to one of five groups. Three cocaine-treated groups were injected SC with either 40, 60, or 80 mg/kg/day of cocaine from postnatal day (PND) 4 through 9. Control groups were either injected with equivalent volumes of sterile dH2O (vehicle control) or received no injections (normal control) from PND 4 through 9. This early postnatal period, corresponding to the third trimester of pregnancy in humans, is characterized as a period of rapid development within the central nervous system (CNS), generally termed the brain growth spurt. The survival rate, somatic growth, and brain development in response to the various dosages of postnatal cocaine administration were assessed. There was a dose-dependent relationship between cocaine administration and survival rate. Furthermore, significantly reduced somatic growth, assessed in terms of body weight, was found in animals given 80 mg/kg cocaine daily, as compared with controls. With respect to brain weight, no significant differences were obtained among the various doses of cocaine-treated and control animals and there was no evidence of regional vulnerability (forebrain, cerebellum, or brainstem) to the cocaine insult. Additionally, neither an effect of gender, nor the interactions of gender with various doses of cocaine treatment was found on somatic growth and brain development. Taken together, the present results suggest that the brain exhibits a greater resistance to the cocaine insults than does somatic growth. Several possible explanations regarding the somatic growth retardation are discussed.

This study compares the development of the human cerebral cortex of 224 girls and 284 boys in a series of cross-sectional analyses as measured by EEG coherence on normal children's brains (longisectional design). Correlations of these EEG readings taken from all brain regions between a mean age of 6 months and 16 years yield measures of synaptic communication. Time series of these measures reflect the changing growth patterns across the 16 years. Time series of mean EEG coherence are oscillating waves that travel across left-right and front-back spatial gradients in both hemispheres. Growth spurts in mean coherence correlate with the genetic process of synapse overproduction and pruning spurts correlate with synapse elimination. Growth processes in neural connections evident in each hemisphere were examined in detail. Principal components analysis with varimax rotation identified in-phase patterns of connectivity for 64 electrode-pair sites. Analyses of effect-size differences in mean and variance ratios assisted in determining the developmental patterns in each of the brain regions studied. The study finds gender differences in both neurological structures and the timing of their development, with the timing differences being most prominent. Each sex's postnatal development concentrates on networks that showed less cortical growth during early fetal development; i.e, females favor the right hemisphere and males favor the left. Gender differences are greatest in the left prefrontal medial and lateral regions and the right posterior region, supporting gender differences indicated by anatomical, neurological and psychometric assessments. These regions support cognitive tasks of language expression and articulation, spatial visualization, judgment and goal setting. Fine-grain analyses of 42 intrahemisphere electrode-pair sites indicate the timing difference at some sites is a phase shift less than a year; at other sites, the difference is substantial, not easily described by a phase-shift dimension. other gender differences related to rate of development are specified. / Ph. D.

O estudo foi realizado através de avaliação de 214 hemisférios cerebrais, de 107 espécimes humanos, com a idade variando desde 12 semanas de gestação até 8 meses pós-natal. A idade gestacional dos fetos foi calculada através do seu peso corpóreo. Os fetos com malformações congênitas ou com encéfalos danificados foram excluídos. Após a fixação do encéfalo em solução de formol a 10%, foi removida a aracnóide para a análise dos sulcos do cérebro, os quais foram então estudados, desde o seu aparecimento, até sua formação completa. A principal finalidade desse estudo foi estabelecer os padrões de desenvolvimento morfológico dos sulcos cerebrais característicos de cada idade gestacional. Tendo como base a análise dos resultados, foram estabelecidas tabelas de referências cronológicas pertinentes à formação de cada sulco em toda superfície do cérebro. / The study was done through the analysis of 214 brain hemispheres of 107 human brains, with their ages ranging from 12 weeks of gestation to 8 months of postnatal life. The gestational age was calculated from their body weight. The fetuses with congenital abnormalities and or damaged brains were excluded from the study. After the brain fixation with 10% formalin, the arachnoid was removed for the study of the sulci and fissures of the brain, since their appearance until their complete development. The aim of this anatomical study was to establish a reliable sulci morphological pattern characteristic of each gestational age. Based in our findings, reference tables pertinent to the appearance of each sulci of all brain surface were built and are here presented.

<p>Developmental toxicology is an important part of preclinical drug toxicology as well as environmental toxicology. Assessing reproductive and developmental toxicity is especially expensive and time demanding, since at least two generations of animals are needed in the tests. In light of this there is a great need for alternative test methods in many areas of developmental toxicity testing.</p><p>The complete set of RNA transcripts in any given organism is called the transcriptome. Proteomics refers to the study of the proteins in a given organism or cell population. The work of this thesis has focused on the use of high throughput screening methods in transcriptomics and proteomics to search for molecular markers of developmental toxicity.</p><p>We have studied the global gene expression effects of the developmentally toxic substance valproic acid (VPA) using microarray technology. Several genes were found that display the same gene expression pattern <i>in vivo</i> using mouse embryos as the pattern seen <i>in vitro</i> using the embryocarcinoma cell line P19. Based on these observations, the gene Gja1 was suggested as one potential molecular marker of VPA induced developmental toxicity and potential marker of histone deacetylase (HDAC) inhibition <i>in vitro</i>. </p><p>Using 2D-DIGE technology, which measures relative protein abundances, the effect of neonatal exposure to the flame retardant PBDE-99 was studied in mouse brain (cortex, hippocampus and striatum) 24 hr after exposure. Differentially expressed proteins in the cortex and the striatum indicate that PBDE-99 may alter neurite outgrowth.</p><p>Finally, we have suggested several improvements in the use of the 2D-DIGE technology. Novel methods for normalizing data were presented, with several advantages compared to existing methods. We have presented a method named DEPPS that makes use of all identified proteins in a dataset to make comprehensive remarks about biological processes affected.</p>

Developmental toxicology is an important part of preclinical drug toxicology as well as environmental toxicology. Assessing reproductive and developmental toxicity is especially expensive and time demanding, since at least two generations of animals are needed in the tests. In light of this there is a great need for alternative test methods in many areas of developmental toxicity testing. The complete set of RNA transcripts in any given organism is called the transcriptome. Proteomics refers to the study of the proteins in a given organism or cell population. The work of this thesis has focused on the use of high throughput screening methods in transcriptomics and proteomics to search for molecular markers of developmental toxicity. We have studied the global gene expression effects of the developmentally toxic substance valproic acid (VPA) using microarray technology. Several genes were found that display the same gene expression pattern in vivo using mouse embryos as the pattern seen in vitro using the embryocarcinoma cell line P19. Based on these observations, the gene Gja1 was suggested as one potential molecular marker of VPA induced developmental toxicity and potential marker of histone deacetylase (HDAC) inhibition in vitro. Using 2D-DIGE technology, which measures relative protein abundances, the effect of neonatal exposure to the flame retardant PBDE-99 was studied in mouse brain (cortex, hippocampus and striatum) 24 hr after exposure. Differentially expressed proteins in the cortex and the striatum indicate that PBDE-99 may alter neurite outgrowth. Finally, we have suggested several improvements in the use of the 2D-DIGE technology. Novel methods for normalizing data were presented, with several advantages compared to existing methods. We have presented a method named DEPPS that makes use of all identified proteins in a dataset to make comprehensive remarks about biological processes affected.

Many cyanobacteria are reported to produce the nonprotein amino acid β-N-methylamino-L-alanine (BMAA). Cyanobacteria are extensively distributed in terrestrial and aquatic environments and recently BMAA was detected in temperate aquatic ecosystems, e.g. the Baltic Sea. Little is known about developmental effects of the mixed glutamate receptor agonist BMAA. Brain development requires an optimal level of glutamate receptor activity as the glutamatergic system modulates many vital neurodevelopmental processes. The aim of this thesis was to investigate the developmental neurotoxicity of BMAA, and its interaction with the pigment melanin. Autoradiography was utilized to determine the tissue distribution of 3H-labelled BMAA in experimental animals. Behavioral studies and histological techniques were used to study short and long-term changes in the brain following neonatal exposure to BMAA. Long-term changes in protein expression in the brain was also investigated using matrix-assisted laser desorption ionization (MALDI) imaging mass spectrometry (IMS). A notable targeting of 3H-BMAA to discrete brain regions e.g. hippocampus and striatum in mouse fetuses and neonates was determined by autoradiography. BMAA treatment of neonatal rats on postnatal days 9–10 induced acute but transient ataxia and hyperactivity. Postnatal exposure to BMAA also gave rise to reduced spatial learning and memory abilities in adulthood. Neonatal rat pups treated with BMAA at 600 mg/kg showed early neuronal cell death in the hippocampus, retrosplenial and cingulate cortices. In adulthood the CA1 region of the hippocampus displayed neuronal loss and astrogliosis. Lower doses of BMAA (50 and 200 mg/kg) caused impairments in learning and memory function without any acute or long-term morphological changes in the brain. The MALDI IMS studies, however, revealed changes in protein expression in the hippocampus and striatum suggesting more subtle effects on neurodevelopmental processes. The studies also showed that BMAA was bound and incorporated in melanin and neuromelanin, suggesting that pigmented tissues such as in the substantia nigra and eye may be sequestering BMAA. In conclusion, the findings in this thesis show that BMAA is a developmental neurotoxin in rodents. The risks posed by BMAA as a potential human neurotoxin merits further consideration, particularly if the proposed biomagnifications in the food chain are confirmed.

The developing brain goes through a number of developmental periods during which it displays an increased sensitivity to exogenous disturbances. On such period is the so called “Brain growth spurt” (BGS) which in humans takes place starting from the third trimester of pregnancy and throughout the first few years of life. The corresponding period in rats and mice is the first postnatal weeks. Exposure to relatively modest concentrations of the brominated flame retardant PBDE-99 during the second week of life in mice causes a more or less permanent impairment in the ability of the animals to adjust properly to environmental changes at adulthood. This “late response on early exposure” reflects the long-term consequences of disrupting the developing brain during a sensitive time period. The cellular mechanisms underlying the behavioral effects are far from clear. To address the initial damage occurring around the time of exposure, the approach used in this thesis is to use proteomics to analyze the effects of PBDE-99 on protein expression soon (24 hours) after exposure of the neonatal mouse on postnatal day (PND) 10.The thesis comprises the effects on the proteome in three distinct brain parts: cerebral cortex, striatum and the hippocampus. In addition, an in vitro model was developed and used to evaluate the PBDE-99 effects on cultured cerebral cortex cells from embryonic rat brains. Gel-based proteomics (2D-DIGE) coupled to MALDI- or ESI-MS has been used throughout for the proteomics experiments, but other techniques aimed at analyzing both proteins and mRNA have also been used to better characterize the effects. Even if the protein complements expressed by the different brain parts and separated with 2D-DIGE are seemingly similar, the effects are apparently specific for the different brain regions. In hippocampus, PBDE induces effects on proteins involved in metabolism and energy production, while the effects in striatum point towards effects on neuroplasticity. PBDE-99 changes the expression of cytoskeletal proteins in the cerebral cortex 24 hours after exposure. Interestingly, in vitro exposure of cerebral cortex cells to a PBDE-99 concentration in the same order of magnitude as in the in vivo neonatal brain also induces cytoskeletal effects, in the absence of cytotoxicity. This may suggest effects on regulatory aspects of cytoskeletal dynamics such as those involved in neurite sprouting. This thesis also addresses the problems involved in presenting proteomics data. Many of the available methods and approaches for presenting transcriptomics data are not suitable for isoform rich protein data. Modifications of existing methods and the development of a new approach (DEPPS) is also presented. Most importantly, the thesis presents the application and usefulness of proteomics as hypothesis generating techniques in neurotoxicology.

O estudo foi realizado através de avaliação de 214 hemisférios cerebrais, de 107 espécimes humanos, com a idade variando desde 12 semanas de gestação até 8 meses pós-natal. A idade gestacional dos fetos foi calculada através do seu peso corpóreo. Os fetos com malformações congênitas ou com encéfalos danificados foram excluídos. Após a fixação do encéfalo em solução de formol a 10%, foi removida a aracnóide para a análise dos sulcos do cérebro, os quais foram então estudados, desde o seu aparecimento, até sua formação completa. A principal finalidade desse estudo foi estabelecer os padrões de desenvolvimento morfológico dos sulcos cerebrais característicos de cada idade gestacional. Tendo como base a análise dos resultados, foram estabelecidas tabelas de referências cronológicas pertinentes à formação de cada sulco em toda superfície do cérebro. / The study was done through the analysis of 214 brain hemispheres of 107 human brains, with their ages ranging from 12 weeks of gestation to 8 months of postnatal life. The gestational age was calculated from their body weight. The fetuses with congenital abnormalities and or damaged brains were excluded from the study. After the brain fixation with 10% formalin, the arachnoid was removed for the study of the sulci and fissures of the brain, since their appearance until their complete development. The aim of this anatomical study was to establish a reliable sulci morphological pattern characteristic of each gestational age. Based in our findings, reference tables pertinent to the appearance of each sulci of all brain surface were built and are here presented.

Un des aspects les plus marquants de l'évolution des grands singes est l'augmentation relative du volume du cerveau, et en particulier du néocortex, qui culmine chez Homo sapiens. La microcéphalie primaire est une anomalie congénitale du développement cérébral humain caractérisée par un cerveau normalement formé mais de petit volume. Il en existe une forme isolée, non syndromique, dont la majorité des cas sont d'origine génétique et transmis sur le mode autosomique récessif (MCPH), qui constituent donc un modèle génétiquement simple qui résulte de l'altération d'un seul gène, essentiel dans le développement volumique du cerveau. Une consanguinité parentale est présente dans la majorité des cas, ce qui permet une approche puissante de localisation génomique de la mutation responsable, nommée cartographie d'homozygotie. A ce jour, huit gènes causant cette anomalie ont déjà été identifiés :BRIT1 (MCPH1), ASPM (MCPH5), CDK5RAP2 (MCPH3) et CENPJ (MCPH6), et plus récemment, STIL (MCPH7), CEP152 (MCPH9), WDR62 (MCPH2) et CEP135 (MCPH8). Tous ces gènes jouent un rôle au niveau du cycle cellulaire. Nous avons tenté, au cours de ce doctorat, d’identifier et de caractériser un nouveau gène du locus MCPH4 cartographié au laboratoire et situé sur le bras long du chromosome 15. <p>Dans trois familles MCPH4 originaires de villages voisins du Maroc rural, nous avons affiné la zone de liaison à un segment de 3,7cM, contenant un haplotype commun sur une longueur de 2,7cM suggérant un déséquilibre de liaison autour d’une mutation ancestrale. Le LOD score combiné dans les trois familles était supérieur à 6. Parmi les gènes contenus dans cette région, nous avons sélectionné des candidats que nous avons ensuite analysés par séquençage direct de l’ADN de nos patients. Parmi ces gènes, CASC5 présentait un variant, homozygote chez nos patients, hétérozygote chez leurs parents sains et absent chez 150 contrôles non apparentés. Nous avons utilisé la technologie 454 de séquençage à haut débit de Roche pour séquencer les gènes de l’intervalle de 2.7Mb en une fois. Parmi les mutations identifiées, nous n’avons trouvé qu’une seule variation exonique inconnue qui correspondait à la variation faux-sens déjà identifiée dans le gène CASC5. CASC5 est une protéine centromérique requise pour l’alignement des chromosomes à la métaphase et pour le point de contrôle métaphasique de la progression mitotique. Il était donc potentiellement un très bon candidat causal de la microcéphalie primaire. CASC5 lie directement MIS12, BUB1, BUBR1 et Zwint-1, et fait partie du réseau KMN du kinétochore. Il est nécessaire à l’ancrage des centromères chromosomiques au fuseau mitotique, et est requis pour le contrôle du cycle cellulaire au niveau du Spindle-Assembly Checkpoint.<p>Nous avons ensuite confirmé que la mutation génère un défaut d’épissage chez nos patients consistant en la perte partielle de l’exon 18 dans l’ARNm. La perte de cet exon conduit à un déphasage du cadre de lecture provoquant l’apparition d’un codon STOP prématuré dans l’exon 19. Ceci prédit donc la formation d’une protéine tronquée, ou absente après dégradation par le mécanisme cellulaire de dégradation des ARNm non-sens. Par Western-Blotting nous avons pu révéler, en lignée lymphoblastoïdes, la protéine CASC5 endogène chez tous nos patients, y compris, à notre surprise, chez les sujets atteints. <p>Il est décrit dans la littérature qu’un knockdown de CASC5 provoque un mauvais alignement des chromosomes, une entrée prématurée en mitose et la formation de micronoyaux, conséquence d’un mauvais alignement des chromosomes pendant la métaphase. Les différentes études menées sur le phénotype cellulaire de nos patients en lignées lymphoblastoïdes n’ont pu révéler ces défauts. Notre hypothèse est que l’allèle muté est hypomorphe et que le phénotype cellulaire décrit en boites de culture ne s’observerait in vivo que dans certaines cellules du cerveau en cours de développement.<p>En parallèle de ces travaux, nous avons également contribué à l’identification de la cause d’une microcéphalie primaire syndromique, associée à un diabète insulino-requérant précoce, tansmis sur le mode récessif autosomique et identifié dans une famille d’origine marocaine. Notre laboratoire avait localisé la mutation dans une région de 3 cM du chromosome 4. Parmi les 39 gènes compris dans cette région, nous en avons sélectionné et séquencé plusieurs. Aucun n’a cependant montré de mutation. Un séquençage de l'exome complet de l’un de nos patients, a permis de mettre en évidence une mutation non-sens homozygote dans un gène de l’intervalle critique de liaison. La mutation ségrège avec le phénotype autosomique récessif chez les malades, leurs parents et leurs germains asymptomatiques. L’abondance du transcrit de ce gène a été mesurée en lignées lymphoblastoïdes de patients :il est présent en quantité similaire chez les patients et chez un contrôle non apparenté. <p>En conclusion, notre travail a permis l’identification d’un nouveau gène muté chez des patients atteints de microcéphalie primaire, CASC5, avec un haut degré de preuve de causalité de cette mutation, impliquant ainsi une protéine du réseau KMN du kinétochore dans le développement volumique du cerveau humain. Nous avons par ailleurs contribué à l’identification d’un nouveau gène causant microcéphalie primaire et diabète juvénile, dont le mécanisme biologique est en cours d’investigation.<p> / Doctorat en Sciences biomédicales et pharmaceutiques / info:eu-repo/semantics/nonPublished

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