Double-crested Cormorants (Phalacrocorax auritus) impact United States commercial aquaculture and are considered the greatest avian predators on catfish (Ictalurus spp.) aquaculture facilities in the Mississippi Delta. Recent changes in aquaculture practices, regulatory policies, and decreased overall hectares in production prompted this study that: 1) estimated abundance and distribution of cormorants at their night roosts using aerial surveys, 2) assessed cormorant consumption of catfish in relation to their night roost through cormorant collections and stomach contents analysis, and 3) updated a cormorant bioenergetics model with contemporary data to estimate catfish loss. Models estimated that 4.2 and 5 million cormorant forage days occurred during winters 2016-2018 with an average of 33% of their diet consisting of catfish, or 558.1 and 739.5 metric tons of catfish consumed by cormorants in winters 2016-2018. These results will inform wildlife managers about relationships between cormorant night roost locations and disproportionate consumption of catfish.

Edwardsiella ictaluri causes enteric septicemia of catfish (ESC), one of the most important bacterial diseases of farmed channel catfish in the USA. Use of live attenuated vaccines (LAVs) is an effective strategy for combating mortalities in catfish farms. Our research group has developed three live attenuated E. ictaluri strains [EiΔevpB, EiΔgcvPΔsdhCΔfrdA (ESC-NDKL1), and EiΔhemRΔfrdAΔsdhC (triple-hemR)] that provide various levels of protection against ESC. However, the protective mechanisms of these vaccine candidates are mostly unknown. The overall objective of my study was to investigate protective mechanisms of these LAVs. To accomplish this, catfish fry were immersion challenged with EiΔevpB, ESC-NDKL1, and triple-hemR. Additional catfish fry were immersion challenged with Aquavac-ESC and E. ictaluri wild-type (EiWT) as controls. The internalization of antigens through the mucosal surfaces as well as the pathology and molecular immune responses were studied. The investigations showed that EiΔevpB and ESC-NDKL1 were highly safe and efficacious compared to Aquavac-ESC and EiWT. Pathologically, vaccination with EiΔevpB and ESC-NDKL1 decreased the pathological lesions, EiWT replication in catfish, and increased the ability of the immune system to resist and kill EiWT. On the other hand, triple-hemR was not safe causing severe tissue damage similar to EiWT. The gene expression data showed significantly high expression of innate and adaptive immune genes following vaccination and challenge with EiWT. Additionally, EiΔevpB and ESC-NDKL1 induced immune proliferation in pronephros after exposure to EiWT. Taken together, EiΔevpB and ESC-NDKL1 vaccine strains performed better to induce immune responses and reduce damage in the host tissues during EiWT challenge compared to Aquavac-ESC.

The present work examines the antimicrobial efficacy of the essential oils of thyme, oregano and carvacrol against L. monocytogenes biofilms produced on stainless steel coupons and for control of L. monocytogenes growth on raw catfish fillets stored at 4°C for 10 days. At 0.5%, all three essential oils were highly effective in completely eliminating L. monocytogenes cells from stainless coupons within 24 h as compared to the untreated control yielding ~7 log CFU/cm2 L. monocytogenes. When catfish inoculated with L. monocytogenes were dipped for 30 min at 4°C in essential oil solutions of thyme and oregano at 1%, 2% and 5%, there were no significant reductions in L. monocytogenes counts on the fresh catfish fillets as compared to untreated control. For the same conditions, treatment with 2% carvacrol resulted in a complete reduction of 4 log CFU/g of L. monocytogenes counts from fresh catfish fillets.

Production limits have been maximized in earthen pond (EP) aquaculture. Pond design innovations may increase limits of catfish production by enhancing nitrogen processes. The split-pond system (SPS) partitions a pond into fish (20%) and waste treatment/oxygen production compartments (80%). In 2010, an SPS and EP were stocked (March) and harvested (October) with 25,000 catfish ha-1. Water quality (DO, pH, temp, ORP, CHL-a), nitrogen dynamics (TN, TAN, NO2-, NO3-), nitrogen pathway estimation, and nitrogen budgets were compared. In the waste treatment compartment, maximum DO concentrations exceeded 40 mg L-1, whereas ORP values provided favorable denitrification conditions. October EP NO2- concentrations were 3-4 mg L-1; 10old greater than the SPS. Feed (~90%) and fish (~60%) were the greatest source and sink of nitrogen, respectively. The SPS may be a promising pond design for the catfish industry through enhanced nitrogen removal and potential opportunity for increased production.

Two distinct compartmentalized isozymes of aldolase and triosephosphate isomerase were examined in the photoautotrophically and heterotrophically grown green alga Euglena gracilis. A comparison of the chemical and physical properties of the isozymes was carried out. Isozymes of phosphoglucose isomerase were isolated in homogeneous form from liver and muscle tissue of the fresh water catfish. The two organ-specific isozymes were essentially identical with respect to their molecular weights but exhibited different electrophoretic and kinetic properties, and amino acid compositions.

Toll-like receptor (TLR) ligands and phytochemical feed additives (PFAs) were evaluated in this study to determine the effects of immune stimulation on gut immunity in the zebrafish, Danio rerio, and the channel catfish, Ictalurus punctatus. Rag1-/- (MT) zebrafish were used to study how the TLR ligands β-glucan and resiquimod (R848) affect the innate immune system in the gut of MT zebrafish. Enhanced expression of marker genes (NITR9, NCCRP-1 and MPEG-1) indicated stimulation of Natural Killer (NK) cells, non-specific cytotoxic cells (NCCs) and macrophages. After challenge with Edwardsiella ictaluri, MT zebrafish stimulated with β-glucan demonstrated higher survival and the presence of more macrophages/monocytes in the gut than control MT zebrafish. A PFA test diet containing a blend of prebiotic fiber, oregano, thyme, cinnamon essential oils, and Yucca schidigera (ONE Current™, OC) was fed to channel catfish for 3 months in ponds to determine the effect on channel catfish fingerling growth. Fish were fed in ponds and a tank bacterial challenge followed to test the efficacy of the product. Catfish fed OC demonstrated greater weight gain and feed conversion ratios, higher survival after challenge with E. ictaluri, greater phagocytosis or binding by macrophages and cytotoxic cells. Catfish fed OC also demonstrated greater gut surface area after 2 months feeding OC. To elucidate the effect(s) of each of the compounds in the OC diet on gut immune responses and to determine if PFAs can decrease bacterial colonization and replication within gut tissues, WT and MT zebrafish were fed diets containing different compounds included in OC. Quantification of live bacteria from gut and kidney tissue was determined after challenge with E. ictaluri. Expression levels of immune response genes were evaluated after ingestion of PFAs. Actifibe, Essential oil 25 ppm (EO 25) and Actifibe + EO demonstrated the lowest infection and colonization rate, upregulation of immune response genes, and significantly higher survival when challenged with E. ictaluri. This study demonstrates the potential for application of TLR ligand and feed administered PFAs to improve fish health. Our findings provide a more comprehensive understanding of host gut/pathogen interactions as well as suggestions for novel disease control measures.

The bristlenose pleco (Ancistrus cirrhosus) is a species of armored catfish in the Loricariidae family that breathes air facultatively when the aquatic environment becomes hypoxic. The bristlenose pleco uses its highly vascularized stomach as an air breathing organ. The two main goals of this developmental study were to determine the size of onset of air breathing and to determine the frequency of air breathing behavior in bristlenose plecos from juveniles to adults. Developing juveniles reach functional maturity within four to six months of hatching and grow to an adult size of eight to ten cm in length. To examine the developmental timing for the onset of air breathing, we tested different sized juveniles beginning at one cm up until 8 cm in length. The developmental timing for the onset of air breathing was measured by exposing each fish to a slowly decreasing aquatic oxygen content from 100% air saturation down to 8% air saturation. Fish were first able to breathe air at just over 2 cm and 1 gram in mass. There was a weak negative correlation between fish length and % air saturation at which air breathing began. When exposed to 15% air saturation, frequency of air breathing was negatively correlated with fish length. Armored catfish are becoming an invasive species in the southern US, outcompeting local fauna potentially because of this adaptation. This research provides important insight into the development of the air breathing adaptation that may allow these fish to outcompete the others.

Catfish, the "king" of the U.S. aquaculture, is threatened by a severe, systemic bacterial disease known as enteric septicemia of catfish (ESC). This disease causes high mortality and massive economic losses in cultured channel catfish (Ictalurus punctatus) in the United States. E. ictaluri penetrates catfish intestinal epithelia quickly and establishes a systemic infection rapidly. However, our knowledge on catfish intestine and E. ictaluri interaction is very limited. In Particular, catfish intestinal immune responses and virulence genes needed by E. ictaluri to evade host defenses are not well understood. Hence, our long-term goal is to identify the molecular mechanisms of E. ictaluri-host interactions. The overall objectives of this study were to understand catfish immune responses to E. ictaluri infection and determine essential genes of E. ictaluri during the intestinal invasion. To accomplish the overall objectives of this research, intestinal ligated loops were constructed surgically in live catfish and loops were injected with wild-type E. ictaluri and two live attenuated E. ictaluri vaccine strains developed recently by our research group. We first determined catfish intestinal immune responses against E. ictaluri wild-type and live attenuated vaccine strains. Then, we analyzed the global gene expression patterns of wild-type E. ictaluri and vaccine strains during catfish intestinal invasion using high throughput RNA-Seq technology. Results showed a moderate level of neutrophil and B cell infiltration correlated with significantly lower expression of TNF-α, CD4-1, and CD8-α in the vaccine injected intestinal tissue compared to that of wild-type injected intestinal tissue. Further, RNA-Seq data analysis showed the prominent expression of genes related to bacterial secretion systems, ATP production processes, and multidrug resistance (MDR) efflux pumps in wild-type E. ictaluri. In contrast, the prominently expressed genes in vaccine strains were related to the phosphotransferase system and sugar metabolism processes. All these data suggest that our live attenuated vaccines are capable of triggering effective immune responses in catfish without causing damage to the host.

Piscivorous avian species are of particular importance in Mississippi due to their depredation of cultured catfish throughout the states aquaculture industry. The three most common of these species include the double-crested cormorant (Phalacrocorax auritus), great blue heron (Ardea herodias), and great egret (Ardea alba). Information on these species aquaculture use can aid in effective and ethical management while also providing insight into their foraging ecology and habitat use, which is particularly important given these species augment their nutritional requirements using man-made food sources. The objectives of this research were to explore numerous aspects of avian foraging ecology in relation to aquaculture at multiple spatial and temporal scales using historic and contemporary aerial survey data. First, we examined the distribution and abundance of species on aquaculture at both the farm and pond scale. Pond contents and characteristics influenced each species, including culture practices and surroundings. In all cases, the amount of aquaculture was positively related to species abundances. Pond and farm selection relationships were species-specific, illustrating inherent differences in their foraging ecology. Consequently, specific management actions will depend on the targeted species. We also found cormorant densities on aquaculture has not changed in the past 15 years, even though aquaculture has significantly declined. Second, we measured cormorant distribution between aquaculture and natural water bodies. The highest use of aquaculture occurred when producers were not allowed to use lethal control, whereas the lowest use occurred when producers could. This trend highlights the potential influence of mortality risk on cormorants' foraging distribution. Lastly, we examined cormorant dynamics at the regional scale using roosting data. We found the Midwest breeding population of cormorants has been increasing, but the abundance of cormorants wintering in Mississippi has been decreasing, suggesting aquaculture is the primary cause of inhabitation of the state. We also found the phenology of cormorant spring migration is occurring earlier each year. Aquaculture area had a positive influence on cormorant distribution at roosts particularly prior to migration. These findings suggest changes in agriculture, and potentially climate change, can influence phenology, distribution, and abundance of avian species at multiple scales.

The purpose of this study was to screen the effect of some food-grade ingredients on the off-odors caused by geosmin and 2-methylisoborneol (MIB) compounds in catfish fillets by sensory evaluation. The study revealed that geosmin and MIB odor intensity were reduced to different degrees when fillets were dipped in lime flavor (94% and 67%, respectively), 0.5% acetic acid (AA) (70% and 16%, respectively), hardwood liquid smoke (98% and 86%, respectively), or hickory liquid smoke (98% and 100% respectively) in cooked products. A 0.5% AA proved to be effective in decreasing odor intensity of geosmin (70%) in cooked products, whereas lime flavor (94%), hardwood liquid smoke (98%), and hickory liquid smoke (98%) were very effective in decreasing odor intensity of geosmin in cooked products. These agents added desirable flavors as well, except for AA by panelists? comments. These flavors could be added to a marinade or incorporated in an injection/tumbling solution when catfish fillets are processed.