Thesis (MSc. (Animal breeding and genetics )) --University of Limpopo, 2006 / The objective of this study was to estimate genetic parameters for weekly body weight of feed intake of individually fed beef bulls at centralized testing stations in South Africa using random regression models (RRM). The model for cumulative feed intake included the fixed linear regression on third order orthogonal Legendre polynomials of the actual days on test (7, 14, 21, 28, 35, 42, 49, 56, 63, 70, 77 and 84 day) for starting age group and contemporary group effects. Random regressions on third order orthogonal Legendre polynomials were included for the additive genetic effect of the animal and the additional random effect of weaning-herd-year (WHY) and on fourth order for the additional random permanent environmental effect of the animal. The model for body weights included the fixed linear regression on fourth order orthogonal Legendre polynomials of the actual days on test for starting age group and contemporary group effects. Random regressions on fourth order orthogonal Legendre polynomials were included for additive genetic effects and additional uncorrelated random effects of the WHY and the permanent environment. The residual effects for both traits were assumed to be independently distributed with heterogeneous variance for each measurement period. Variance ratios for additive genetic, permanent environment and WHY for cumulative feed intake at different days on test ranged from 0.07 to 0.10, 0.53 to 0.77 and 0.14 to 0.37, respectively. Variance ratios for additive genetic, permanent environment and WHY for weekly body weights at different test days ranged from 0.26 to 0.29, 0.37 to 0.43 and 0.26 to 0.34, respectively. Estimates of genetic correlation among the same trait (body weight or feed intake) measured at different test days were generally high (>0.80) for any give test pair. The WHY had a significant contribution in variation of performance of bulls on test, despite the 28-day adjustment period. RRM provided the opportunity to study changes in genetic variability within the studied traits over time. Random Regression Models could be used in the National Genetic Evaluation of beef bulls at central performance testing stations in South Africa.

Thesis (M. Tech.) - Central University of Technology, Free State, 2010

Thesis (MScAgric)--University of Stellenbosch, 2004. / ENGLISH ABSTRACT: The aim of this study was to provide scientifically founded guidelines to enhance the understanding of beef production from natural pastures in arid sweet veld regions. Cattle from four breed types ranging from large to small frame sizes (Simmentaler cross > Bonsmara cross > Afrikaner > Nguni) were compared in terms of cow production and efficiency as well as the growth performance, carcass and meat quality of steers slaughtered at 18, 24 and 30 months of age. Eighteen and 30 month old steers were slaughtered at the end of the wet summer season, while the 24 month old steers were slaughtered at the end of the dry winter season. The Afrikaner herd (59.8 ± 9.0 %) had lower (p < 0.05) pregnancy rates than the Simmentaler cross (79.3 ± 12.2 %), Bonsmara cross (76.5 ± 11.1 %) and Nguni herds (86.1 ± 5.8 %). Breed differences (p < 0.05) for weaning weight and preweaning gain were observed (Simmentaler cross > Bonsmara cross > Afrikaner > Nguni). The Nguni cow herd (46.5 ± 5.7 kg/100 kg mated) was more (p < 0.05) efficient than the Simmentaler cross (36.2 ± 5.5 kg/100 kg mated), Bonsmara cross (37.7 kg/100 kg mated) and Afrikaner herds (29.5 ± 5.9 kg/100 kg mated). During the dry winter season steers gained 23.4 ± 1.5 kg from 7 to 12 months of age and from 18 to 24 months of age they gained 20.9 ± 2.0 kg. During the wet summer season steers gained 109.7 ± 1.8 kg from 12 to 18 months and 120.3 ± 4.1 kg from 24 to 30 months of age. The best (p > 0.05) fat classification codes were attained at 30 months of age and the worst (p < 0.05) at 24 months of age. Simmentaler cross steers attained the lowest (p < 0.05) fat classification at all three age classes. At 30 months of age, 15 of the 63 steers slaughtered had 3 or 4 permanent incisors, while 47 steers had 2 permanent incisors. The total amount as well as the percentage kidney and omental fat were the highest (p < 0.05) at 30 months of age and the lowest (p < 0.05) at 24 months. Back fat thickness followed the same pattern. Although breed differences for some meat quality parameters were observed, slaughter age had a much more pronounced effect on meat quality parameters. The percentage cooking loss was the lowest (p < 0.05) at 30 months of age. The meat was also darker (p > 0.05) and more red (p < 0.05) at 30 months than at 18 or 24 months of age. The pH24 was higher (p < 0.05) at 24 (5.68 ± 0.05) and 30 months (5.65 ± 0.03) than at 18 months of age (5.48 ± 0.04). A trained sensory panel only detected that Longissimus muscle samples from 18 month old steers were more tender (p < 0.05) than that from 30 month old steers. Similar results were found for Warner-Bratzler shear force values. Marketing steers at 30 months of age resulted in higher production outputs for all the breed types than marketing weaners. For marketing both weaners and 30 month old steers the Nguni herd produced more marketable kilograms live weight than the Simmentaler cross, the Bonsmara cross and the Afrikaner herds. Different marketing systems suitable to the Arid Sweet Bushveld were identified. Each marketing system is discussed in terms of its application, advantages, disadvantages and adaptability to arid regions. It is maintained throughout that a conservative approach to grazing as well as cattle management is critical to ensure stable production systems in arid regions with erratic rainfall patterns. / AFRIKAANSE OPSOMMING: Die oogmerk van hierdie studie is om wetenskaplik gefundeerde riglyne daar te stel wat die begrip van beesvleis produksie vanaf natuurlike weidings in ariede soetveld streke sal verbeter. Beeste van vier ras tipes wat wissel van groot- tot kleinraam tipes (Simmentaler kruis > Bonsmara kruis > Afrikaner > Nguni) is vergelyk in terme van koeiproduksie en effektiwiteit sowel as die groei prestasie, karkas- en vleiskwaliteit van osse op 18-, 24- en 30-maande ouderdom. Osse wat op 18 en 30 maande ouderdom geslag is, is aan die einde van die nat somerseisoen geslag, terwyl osse wat op 24 maande ouderdom geslag is, aan die einde van die droë winterseisoen geslag is. Die Afrikaner kudde (59.8 ± 9.0 %) het ’n laer (p < 0.05) reproduksietempo as die Simmentaler kruis (79.3 ± 12.2 %), Bonsmara kruis (76.5 ± 11.1 %) en die Nguni kuddes (86.1 ± 5.8 %) gehandhaaf. Ras verskille (p < 0.05) ten opsigte van speenmassas en voorspeense groeitempo’s is waargeneem (Simmentaler kruise > Bonsmara kruise > Afrikaners > Ngunis). Die Nguni koei kudde (46.5 ± 5.7 kg/100 kg gedek) was meer (p < 0.05) effektief as die Simmentalerkruis (36.2 ± 5.5 kg/100 kg gedek), Bonsmarakruis (37.7 kg/100 kg gedek) en die Afrikaner kuddes (29.5 ± 5.9 kg/100 kg gedek). Gedurende die droëwinter seisoen het die osse vanaf 7 to 12 maande ouderdom 23.4 ± 1.5 kg in liggaamsmassa toegeneem en vanaf 18 tot 24 maande ouderdom het hulle 20.9 ± 2.0 kg toegeneem. Gedurende die nat somerseisoen het die osse vanaf 12 tot 18 maande ouderdom 109.7 ± 1.8 kg in liggaamsmassa toegeneem en van 24 tot 30 maande ouderdom het hulle 120.3 ± 4.1 kg toegeneem. Die beste (p < 0.05) vetklassifikasie kodes is op 30 maande ouderdom verkry en die swakste (p < 0.05) op 24 maande ouderdom. Simmentalerkruisosse het by alle ouderdomsgroepe die swakste (P < 0.05) vetklassifikasie kodes behaal. Op 30 maande ouderdom het 15 van die 63 osse wat geslag is 3 of 4 permanente snytande gehad, terwyl 47 osse 2 permanente snytande gehad het. Die totale hoeveelheid sowel as die persentasie nier- en omentumvet was die hoogste (p < 0.05) op 30 maande ouderdom en die laagste (p < 0.05) op 24 maande ouderdom. Rugvetdikte het dieselfde patroon gevolg. Alhoewel rasverskille vir sommige vleiskwaliteitsparameters waargeneem is, het slagouderdom’n groter effek hierop. Die persentasie kookverlies was die laagste (p < 0.05) op 30 maande ouderdom. Die vleis was ook donkerder (p < 0.05) en meer rooi (p < 0.05) op 30 maande ouderdom as op 18 en 24 maande ouderdom. Die pH24 was hoër (p < 0.05) op 24 (5.68 ± 0.05) en 30 maande ouderdom (5.65 ± 0.03) as op 18 maande ouderdom (5.48 ± 0.04). Behalwe vir sagtheid, is geen ander ras- of slagouderdomsverskille in die longissimus spiermonsters vir enige van die sensoriese eienskappe wat geëvalueer is, waargeneem nie. ’n Opgeleide sensoriese paneel het slegs waargeneem dat die longissimus spiermonsters van 18 maand oue osse sagter (p < 0.05) was as dié van 30 maand oue osse. Soortgelyke resulte is vir die Warner-Bratzler snyweerstand gevind. Die bemarking van 30 maand oud osse het hoër produksie uitsette vir al die ras tipes opgelewer as die bemarking van speenkalwers. Met die bemarking van beide speenkalf en 30 maand oue osse, het die Ngunikudde meer bemarkbare kilogram lewendige massa as die Simmentalerkruis, die Bonsmarakruis en die Afrikaner kuddes geproduseer. Verskillende bemarkingstelsels wat as geskik vir die Ariede Soet Bosveld beskou word, is geïdentifiseer. Elke bemarking stelsel is in terme van sy toepassing, voor- en nadele asook die toepaslikheid daarvan in ariede streke bespreek. Dit word deurgaans aanbeveel dat ’n konserwatiewe benadering tot beide weidings- en kuddebestuur, krities is om stabiele produksiestelsels in ariede streke met wisselvalige reënvalpatrone te verseker.

No description available.

Department of Animal Science / MSCAGR (Animal Science)

MSCAGR (Animal Science) / Department of Animal Science / The Nguni is a transboundary indigenous Southern African cattle breed. The breed has distinct populations that are adapted to the different ecological zones of Southern Africa. Previous work on characterising the Nguni has been limited to within-country studies. Thus, the aim of the current study was to genetically characterise South African (SA) Nguni, Mozambican Nguni (Landim) and Swazi Nguni populations across Southern African region using a panel of 25 microsatellite markers, recommended by FAO and ISAG for genetic diversity studies. Genotypic data were generated from 90 unrelated autosomal DNA samples of the three cattle populations (SA Nguni n=30, Mozambican Nguni (Landim) n=30 and Swazi Nguni n=30) collected from government research stations and stud herds. Five South African beef cattle breeds’ DNA profiles were obtained from the ARC-DNA database and used as reference populations. A majority of the microsatellite markers were highly polymorphic across the studied populations. High genetic diversity was detected and expected heterozygosity varied from 71% (Landim) to 75% (SA Nguni) with a higher mean number of alleles (MNA) in the SA Nguni (7.52±0.42) compared to the Swazi Nguni (6.92±0.40) and Landim (7.16±0.43) populations. Observed heterozygosity (Ho) (0.597±0.046) compared to expected heterozygosity (He) (0.719±0.022) was lowest for the Swazi Nguni, confirming a relatively high level of inbreeding (FIS=0.158) in that population. An analysis of molecular variance (AMOVA) revealed that 9.61% of the total variation occurred among populations, while 90.39% occurred within populations. Short genetic distance (29.9%) was observed between Landim and Swazi Nguni, with the SA Nguni (>50%) being the most genetically distant population. The distant relationship between SA Nguni and the other two Nguni cattle populations was further confirmed by neighbor-joining (NJ) tree, Principal Coordinates Analyses (PCoA) and Factorial Corresponding Analysis (FCA). The structure of the three Nguni cattle populations clustered independently, despite some evidence of admixture. Additionally, genetic differentiation and population structure within four Mozambican indigenous cattle populations were investigated using the same panel of microsatellite markers. The analysis of unrelated autosomal DNA was performed on 120 animals (Angone n=30, Bovine de Tete n=30, Landim n=30 and Namaacha Nguni n=30), which presented sufficient genetic diversity across all populations. Estimates of mean number of alleles, observed and expected heterozygosities were 6.920±0.20, 0.68±0.02 and 0.71±0.01, respectively. Genetic differentiation among the populations accounted for 8.02% of total genetic variability. Negative (-0.025±0.029) to low positive (0.073±0.050) levels of inbreeding were observed within the four populations. The genetic distance, NJ tree, PCoA and FCA revealed a close relationship between Bovine de Tete and Landim as opposed to Angone and Namaacha Nguni. STRUCTURE analysis assigned the four Mozambican populations independently; however Bovine de Tete and Landim showed relatively higher levels of admixture with each other than Angone and Namaacha Nguni. It can be concluded that SA Nguni, Landim and Swazi Nguni populations accomplish high genetic diversity and they are genetically distant; however, the two latter populations are closely related. These results present useful information / NRF

MSCAGR (Animal Science) / Department of Animal Science / Milkability, or ease of milking, is the rate at which milk can be completely drawn from a cow’s udder. It is an important functional trait with regard to milking costs as well as udder health. Milkability traits have not been included in the breeding objectives of South African dairy cattle and their genetic parameters in the population have not been estimated. The primary objective of the study was to estimate genetic parameters for milkability traits in South African Holstein cattle. Data consisted of production and milkability records of 1 532 Holstein cows, from 6 herds, participating in the South African National Dairy Animal Recording and Improvement Scheme during the period 2015 to 2016 . Measures of milkability were average milk flow (AMF), maximum milk flow (MMF) and milking time (MT). Genetic parameters were estimated by a multi-trait sire model using the Restricted Maximum Likelihood (REML) procedure. Means for AMF, MMF and MT were 1.99 kg/min, 3.02 kg/min and 5.50 min, respectively. Non-genetic factors affecting variation in milkability traits were herd-year-season of calving, parity and milk yield. Heritability estimates for AMF, MMF, and MT were 0.23±0.09, h2 = 0.41±0.12 and h2 = 0.36±0.11, respectively. Genetic correlations between the three milkability traits were medium to high, ranging from -0.35±0.23 between AMF and MT to 0.79±0.09 between AMF and MMF. Correlations were positive between AMF and MMF and negative between MT and the other two traits. There was an increase in the mean EBV for AMF of 0.002 kg/min (0.0001 kg/min per year) during the period 2002 to 2014. Maximum milk flow also showed an increasing genetic trend of 0.04 kg/min (0.0003 kg/min per year) over the same period. The genetic trend for MT was undesirable, as it increased by 0.0003 kg/min. There is scope for improving milkability through selection, in South African Holstein cattle, as indicated by the moderate to high heritability estimates. The favourable genetic correlations among milkability traits imply that selection on one trait will result in a correlated improvement in the others. Results of the current study provide a basis for including milkability traits in the breeding objective for South African Holstein cattle.

No description available.