<p>In recent decades there has been great interest to produce novel bio-based composites to reduce carbon footprint without sacrificing the necessities that society demands. To achieve a more sustainable future, research in cellulose biopolymers has risen to the forefront. Impressive mechanical, thermal and optical properties along with its abundant biomass has made nanocellulose (NC) the subject of intense research in the area of electronics, drug delivery, sensors, selective filters, and structural materials, to name a few. The practical utility of any cellulose-based materials requires a more complete understanding of how the fundamental structure affects final performance. This thesis examines several avenues to obtain novel materials by considering processing parameters and preparation methods for working with raw nanocellulose materials, and mechanochemical approaches for surface grafting to obtain modified CNs with improved dispersion in organic media. Lastly, the synergy between the two studies and its impact on advanced materials and nanocomposites is discussed.</p> <p>The low cost and wide availability of cellulose nanofibers (CNF), a refined form of cellulose microfibrils, make these an ideal starting material for our studies. However, the aggregated states of freeze-dried CNFs hinder its use as an additive for reinforcing polymer blends or functional films. The use of <i>tert</i>-butyl alcohol (TBA) as a stabilizer in pharmaceutical drugs has been well studied for its effectiveness in facilitating redissolution and extending product shelf life. Lyophilization of aqueous CNF slurries treated with various amounts of TBA produced a more porous material that could be redispersed with superior colloidal stability relative to untreated freeze-dried CNFs. Furthermore, CNFs lyophilized from aqueous TBA mixtures could be subjected to mild mechanochemical reactions (horizontal ball milling) to produce esterified nanofibers with high degrees of substitution (DS) and good dispersibility profiles in organic solvents. This solventless technique allowed for a variety of carboxylic acids to be grafted onto CNF surfaces. Finally, investigations of new materials with technological utility have been explored using networks of CNFs modified with oleic acid. These can be cast into superhydrophobic (SHP) films having a hierarchical structure characteristic of a self-similar material, with a wettability comparable to that of the lotus leaf. The SHP surface can also be regenerated after surface fouling or physical damage. </p>

<p>Curiosity is a powerful tool, and combined with the ability to observe the natural world, grants humankind an unique opportunity, the opportunity to wonder why. Why do things exist?, why do they do the things they do?, why is this even possible?</p> <p>Research in our lab is focused on the basic understanding and potential application of biological materials, in particular, biological adhesives produced by marine organisms such as oysters. Oysters produce a cement-like material that is able to withstand the dynamic conditions found in coastal environments. The focus of this dissertation is to lay the basis of the characterization of new biological materials by observing and analyzing its physical properties, to measure the performance of the material in natural conditions and finally to identify the basic components that give the material the properties that we observe. The end goal of this project is to understand the properties of this material so we are able to develop a synthetic system that is able to imitate, as close as possible, what we find in nature. These results, and more importantly, the new questions that emerge from this research, provide a first look at the adhesive system of oysters leading the way to new discoveries in the future.</p>

<p> Mass spectrometry (MS) has become one of the most powerful and versatile tools for chemical analysis due to its ultra-high sensitivity, high throughput, ease of automation, and the large amount of information obtained. Nowadays, MS is extensively used in many tasks, such as identification and quantitation of drug metabolites, analysis of the products of biomass pyrolysis, and study of reactive intermediates, to name a few. However, these mass spectrometric analyses are not without challenges. For example, the requirement for quantifying trace amounts of substances in a complex mixture constantly pushes the detection limit of mass spectrometers, and the increased sample complexity demands higher and higher mass resolution. Therefore, MS is constantly evolving to address more difficult analytical challenges. A variety of MS techniques have been developed over the years, including soft ionization methods that facilitate mass spectrometric analysis of macromolecules, such as proteins and antibodies that enables the development of new therapeutic agents, benchtop high-resolution mass spectrometers, such as the orbitraps that can be used to analyze some of the most complex mixtures, and portable mass spectrometers which can be used in the home and garden and even in cancer surgery. Besides its applications in chemical analysis, MS can serve as a unique tool for the fundamental study of gas-phase ion/molecule reactions, these gas-phase reactions can be used to better understand the reactivities of many reactive intermediates and to obtain structural information for unknown analytes.</p><p></p><p> This thesis is aimed at addressing challenges involved in mass spectrometric analyses of isomeric drug metabolites (Chapter 4), quantitation of drug metabolites by using tandem mass spectrometry coupled with liquid chromatography (LC-MS/MS) (Chapter 5), delineating cellulose depolymerization mechanisms upon fast pyrolysis by using pyrolysis-tandem mass spectrometry (py-MS/MS) (Chapter 6), and studying the reactivities of vinyl cation intermediates (Chapter 7). An overview of the dissertation research is given in Chapter 1, the instrumentation and principles of linear quadrupole ion trap (LQIT) mass spectrometer are discussed in Chapter 2, and the organic synthesis performed for several studies is detailed in Chapter 3.</p>

Cellulose Nanocrystals have been used in a wide range of applications including cement composites as a strength enhancer. This work analyses the use of CNC from several sources and production methods, and their effects on rheology and hydration of pastes made using different cement types with different compositions. Cement Types I/II and V were used to prepare pastes with different water to cement ratios (w/c) and measure the changes in rheology upon CNC addition. The presence of tricalcium aluminate (cement chemistry denotes as C3A) made a difference in the magnitude of CNC effects. At dosages under 0.5vol% to dry cement, CNC reduced the yield stress up to 50% the control value. Pastes with more C¡A reduced yield stress over a wider range of CNC dosages. CNC also increased yield stress of pastes with dosages above 0.5%, twice the control value for pastes with high C3A content at 1.5% CNC and up to 20 times for pastes without C3A at the same dosage.<br>All the CNCs used were characterized in length, aspect ratio, and zeta potential to identify a definitive factor that governs the effect in the rheology of cement pastes. However, no definitive evidence was found that any of these characteristics dominated the measured effects.<br>The CNC dosage at which the maximum yield stress reduction occurred increased with the amount of water used in the paste preparation, which provides evidence of the dominance of the water to cement ratio in the rheological impact of CNC.<br>14<br>Isothermal calorimetry showed that CNC cause concerning retardation effects in cement hydration. CNC slurries were then tested for sugars and other carbohydrates that could cause the aforementioned effect, then slurries were filtered, and impurities were detected in the filtrate, these impurities were quantified and characterized, however, the retardation appeared to be unaffected by the amount of the species detected, suggesting that the crystal chemistry, which is a consequence of the production method, is responsible of this retardation.<br>This work explores the benefits and drawbacks of the use of CNC in cement composites by individually approaching rheology and heat of hydration on a range of physical and chemical tests to build a better understanding of the observed effects.<br>Understanding the effect of CNCs on cement paste rheology can provide insights for future work of CNCs applications in cement composites.

New experimental strategies and algorithmic approaches were devised and tested to improve the analysis of pharmaceutically relevant materials. These new methods were developed to address key bottlenecks in the design of amorphous solid dispersions for the delivery of low-solubility active pharmaceutical ingredients in the final dosage forms exhibiting high bioavailability. <br>

<div>Metal-zeolites are promising materials for passive adsorber technologies for the abatement of nitrogen oxides (NOx, x = 1,2) and aldehydes during low-temperature operation in automotive exhaust aftertreatment systems. The aqueous-phase exchange processes used commonly to prepare metal-zeolites typically require mononuclear, transition metal complexes to diffuse within intrazeolite pore networks with their solvation shells and replace extra framework cations of higher chemical potential. When metal complexes are larger than the zeolite pore-limiting diameter, this imposes intracrystalline transport restrictions; thus, complexes and agglomerates tend to preferentially deposit near the surfaces of crystallites, requiring post-synthetic treatments to disperse metal species more uniformly throughout zeolite crystallites via solid-state ion-exchange processes. Here, we address the influence of post-synthetic gas treatments and zeolite material properties on the structural interconversion and exchange of extra framework Pd in CHA zeolites with a focus on the thermodynamic, kinetic, and mechanistic factors that dictate the Pd site structures and spatial distributions that form.<br></div><div><br></div><div>Pd-amine complexes introduced via incipient wetness impregnation on CHA zeolites were found to preferentially site near crystallite surfaces. Post-synthetic treatments in flowing air results in Pd-amine decomposition and agglomeration to metallic Pd0and supersequent oxidation to PdO, before converting to mononuclear Pd²⁺cations through an Ostwald ripening mechanism at high temperatures (>550 K). Progressively higher air treatment temperatures (up to 1023 K) were found to (1) thermodynamically favor the formation of mononu-clear Pd²⁺cations relative to agglomerated PdO particles, (2) increase the apparent rate of structural interconversion to mononuclear Pd²⁺, and (3) facilitate longer-range mobility of molecular intermediates involved in Ostwald ripening processes that allow Pd cations to form deeper within zeolite crystallites to form more uniformly dispersed Pd-zeolite materials. Additionally, the controlled synthetic variation of the atomic arrangement of 1 or 2Al sites in the 6-membered ring of CHA was used to show a thermodynamic preference to form mononuclear Pd2+cations charge-compensated by 2 Al sites over [PdOH]⁺complexes at 1 Al site. Colloidal Pd nanoparticle syntheses and deposition methods were used to prepare monodisperse Pd-CHA materials to isolate the effects of Pd particle size on structuralinterconversion to mononuclear Pd²⁺under a range of external environments. Consistent with computational thermodynamic predictions, smaller Pd particle sizes favor structural interconversion to mononuclear Pd²⁺under high-temperature air treatments (598–973 K),while adding H2O to the air stream inhibits the thermodynamics but not the kinetics of mononuclear Pd²⁺formation, demonstrating that water vapor in exhaust streams may be deleterious to the long-term stability of Pd-zeolite materials for passive NOx adsorption.<br></div><div><br></div><div>The influence of metal-zeolite material properties on the adsorption, desorption, and conversion of formaldehyde, a government-regulated automotive pollutant, under realistic conditions was investigated to identify beneficial material properties for this emerging application in mobile engine pollution abatement. A suite of Beta zeolite materials was synthesized with varied adsorption site identity (Brønsted acid, Lewis acid, silanol groups, and extra framework metal oxide) and bulk site densities. All materials stored formaldehyde and converted a large fraction of formaldehyde to more environmentally benign CO and CO₂, demonstrating the efficacy of silanol defects and zeolitic supports for the storage of formaldehyde. Sn-containing zeotypes, containing either Lewis acidic framework Sn sites or extra framework SnO_x particles, resulted in the greatest selectivity to CO and CO₂ formed during formaldehyde desorption, suggests that Sn species are a beneficial component in metal-zeolite formulations for the abatement of formaldehyde in automotive exhaust streams.<br></div><div><br></div><div>This work demonstrates how combining precise synthesis of metal-zeolites of varied bulk and atomic properties with site-specific characterization and titration methods enables systematically disentangling the influence of separate material properties (e.g., Pd particle size, zeolite framework Al arrangement, silanol density, heteroatom identify) and external environment on changes to metal structure, speciation, and oxidation state. This approach provides thermodynamic, kinetic, and mechanistic insights into the factors that influence metal re-structuring under the practical conditions encountered in automotive exhaust after treatment applications and guidance for materials design and treatment strategies to form desired metal structures during synthesis and after regeneration protocols.<br></div>

Polymer brushes are extremely versatile materials, as monomer choice allows the user to design a material with the desired physiochemical properties. Given the wide variety in monomer functionality, polymers can be fine-tuned for a specific application. In this work, polymer brushes bound to a silica support are designed and utilized to enhance performance of protein extraction and chromatographic separations. <br> The effectiveness of an analytical method is strongly affected by matrix composition, however, the presence of species other than the target analyte is usually unavoidable. An excellent technique will be able to identify and/or quantify the analyte even when its concentration is low compared with interfering molecules. Protein analysis is particularly challenging, since many proteins of clinical and scientific significance are present in complicated matrices such as plasma or cell lysates. <br>A common method to specifically separate a protein from a complicated matrix is solid phase extraction. In this method, a species (such as an antibody) with high specificity towards the target is immobilized onto a solid substrate (commonly beads or small particles for greater surface area). Next, the target is collected onto the surface, bound by the species. The solid substrate is rinsed of the liquid matrix, before elution of the target. Only the active species should interact with the analyte, and the surface should be otherwise inactive. However, nonspecific interactions lead to binding/adsorption of undesirable compounds. Therefore, an optimal substrate for protein extraction must be 1) easily and completely removable from the liquid phase, 2) have a high concentration of active sites for specific binding, and 3) exhibit low nonspecific binding. As part of this work, commercial magnetic particles were coated with a nonporous silica layer that tolerates the acid bath and silane coating necessary to attach a polymer layer. On the silane coating, a polymer layer was covalently bound; this layer contains epoxide active groups for immobilizing antibodies. These antibodies bind to the target molecule with high specificity, and low nonspecific binding. Obtained particles were evaluated for protein extraction, where antibodies as well as specifically engineered drug compounds were successfully bound to the particle surface.<br>Glycosylation influences several physiopathological processes in proteins. Glycans can act as receptors, modify protein solubility, and participate in folding conformation. Altered glycosylation is a common feature in tumorous cells. As such, many modifications in glycoproteins have been related to cancer, including increased branching of N-glycans or augmented units of sialic acid. Therefore, characterization of glycoproteins is important not only as a diagnostic tool, but also to monitor patients’ response to treatment. Furthermore, it is important in the growing field of monoclonal antibodies as drug carriers. <br>Among different methods used for glycosylation analysis, Hydrophilic Interaction Liquid Chromatography (HILIC) has showed important advantages over time-consuming digestion-MS based techniques. An adequate HILIC stationary phase can be used to rapidly differentiate glycoforms present in a sample. In the second part of this work, a polymer brush based bonded phase was developed as a HILIC stationary phase. The new polymer improved the separation of a model glycoprotein compared with a commercial HILIC column, while also exhibiting enhanced stability over a previous bonded phase synthetized in our group.<br><br>

<p>The development of new materials has been inspired by lessons learned from natural systems. In the area of underwater adhesion and adhesives, inspiration has come from the complex protein adhesives generated by marine organism such as barnacle and mussels. These protein systems have a high incorporation of a unique amino acid, dihydroxyphenylalanine, and provides the unique adhesive qualities synthetic systems strive to emulate.</p> <p>By understanding how marine mussels stick to a variety of surfaces, new strategies can be explored for preventing the adhesion of biological organisms to various substrates. A continuous concern for marine vessels is the detrimental impact caused by biofouling on the hull of the ship. Fuel consumption can increase as the vessel’s drag increasing fuel consumption and non-native species can be introduced into new environments. Taking inspiration from catechol curing, new oxidative surfaces were investigated as potential antifouling coatings.</p> <p>Further insight into the marine mussels ability to apply and cure its adhesive on a variety of substrate has also inspired various synthetic polymers. The catechol moiety can be incorporated into a polymer backbone to give a new solvent based adhesive. Further investigation of the poly(styrene-co-(3,4-dihydroxystyrene)) adhesive system was done to formulate an underwater adhesive for unique use cases. A terpolymer was also explored as an ideal adhesive taking inspiration from the mussels by incorporating flexible, stiff, and sticky components to give a tunable adhesive.</p> <p>Having a strong bonding synthetic adhesive that can be used on a laboratory scale is good for academic investigation, but not of use outside the lab if it cannot easily be produced on a commercial scale. With the goal of large scale synthesis, a new polymerization method was introduced addressing some of the issues currently preventing commercial scale production.</p><br>

<div>Surface level molecules act as an interface that mediates between the surface and the environment. In this way, interfacial molecules are responsible for conferring characteristics of relevance to many modern material science problems, such as electrical conductivity and wettability. For many applications, such as organic photovoltaics and nanoelectronics, macroscopic placement of chemical patterns at the sub-10 nm must be achieved to advance next generation device applications.</div><div><br></div><div>In the work presented here, we show that sub-10 nm orthogonal features can be prepared by translating the building principles of the lipid bilayer into striped phase lipids on 2D materials (e.g. highly ordered pyrolytic graphite (HOPG), MoS2). Macroscopic patterning of these nanoscopic elements is achieved via Langmuir Schafer deposition of polymerizable diyne amphiphiles. On the Langmuir trough, amphiphiles at the air water interface are ordered into features that can be observed on the macroscale using Brewster angle microscopy. Upon contact of the 2D material with the air-water interface the macroscopic pattern on the trough is transferred to the 2D material creating a macroscopic pattern consisting of sub-10 nm orthogonal chemistries. We also show here how hierarchical ordering can be accomplished via noncovalent microcontact printing of amphiphiles onto 2D materials. Microcontact printing allows a greater measure of control over the placement and clustering of interfacial molecules.</div><div><br></div><div>The alkyl chain/surface enthalpy has a great deal of influence over the ordering of amphiphiles at the sub-nm scale. Here, we examine this influence by depositing diyne amphiphiles onto MoS2 which has a weaker alkyl adsorption enthalpy compared to HOPG. We found that dual-chain amphiphiles deposited on MoS2 adopt a geometry that maximized the molecule-molecule interaction compared to the geometry adopted on HOPG.</div><div><br></div><div>Finally, we show how the hierarchical pattern of diyne amphiphiles can be transferred off of the 2D material onto an amorphous material. This is done by reacting the amorphous material with the conjugated backbone of the diyne moiety through a hydrosilylation reaction to exfoliate the film from the 2D crystalline material. The resulting polymer ‘skin’ has many applications were controlling interfacial properties of an amorphous material is important.</div>

<div>Despite the abundant current applications for ionic hydrogels, much about the stimuli-responsive behavior of these materials remains poorly understood. Due to the soft nature of these materials, the number of traditional characterization methods which can be applied to these systems is limited. Many studies have been conducted to characterize bulk property responses of these materials, and experimental studies have been produced examining the distribution of free ions around single polyelectrolyte chains. However, little experimental work has been published in which molecular-scale interactions are elucidated in confined polyelectrolyte networks. Furthermore, the way in which responsive properties, other than bulk swelling capacity, scale with ionic fraction in mixed polyelectrolyte-non-polyelectrolyte hydrogel systems has not been thoroughly investigated.</div><div>The distribution and strength of polymer-counter-ion bonds has a remarkable effect on hydrogel properties such as absorption capacity, mechanical strength, and size and chemical selectivity. In order to tailor these properties for targeted applications in ionic environments, it is imperative that we thoroughly understand the character of these polymer-ion interactions and their arrangement within the bulk hydrogel. In order to do so, however, non-traditional methods of analysis must be employed.</div><div>This dissertation focuses on a model part-ionic hydrogel system, poly(sodium acrylate-co-acrylamide), in order to assess not only the polymer-counter-ion interactions but also the impact of gel ionic fraction on these interactions and the responses which they induce in gel performance properties. A model alkali (NaCl), alkaline earth (CaCl2), and transition (CuSO4) metal salt are employed to investigate changes in polymer properties from the macroscale to the nanoscale. The aim of this dissertation is to lay the foundation for the development of fundamental structure-property relationships by which we may fully understand the ionically-induced performance properties of polyelectrolyte networks.</div>