Polycyclic Polyprenylated Acylphloroglucinols (PPAPs) are a vast family of natural products, which includes more than 200 members. They contain a stunningly complex molecular architecture which in most cases includes a bicyclo[3.3.1]nonane core. PPAPs have been of interest to the scientific community for their intricate structure, their powerful aid in treating many ailments and large portfolio of biological activities. More particularly, they have been of synthetic interest since 1999 with the first report of an approach to these complicated cores by Nicolaou. Herein, we present the first total synthesis of papuaforin A, papuaforin B, papuaforin C, hyperforin and the formal synthesis of nemorosone following a report by Simpkins and co-workers. We relied on a gold(I)-catalyzed carbocyclization for the construction of the core of this family of natural products. Ginkgolides are isolated from the ginko tree, Ginkgo biloba, a living fossil with records of its existence dating back 280 million years. For centuries, the plant and its extracts have been used extensively for their beneficial properties, especially in China, Japan and India. For example, extract Egb761, one of the most potent fraction, generates over $500 million a year alone. The ginkgolides possess a truly unique compact diterpene framework of six 5-membered rings with a high content oxygen. Eleven oxygens can be found in ginkgolide C for a core containing only 23 carbons. The ginkgolides also include a very unique feature: a tert-butyl group located on the most convoluted ring system: the B ring. Few groups have found success in limning a synthetic route to ginkgolides. Corey’s group was the first to achieve the total synthesis of ginkgolide B in 1987. He was also able to complete ginkgolide A a year later. Crimmins and co-workers also achieved the total synthesis of ginkgolide B a decade later in 1999. Herein, we present our new approach toward ginkgolides through a newly developed methodology for the α-allylation of ketones and the creation of highly hindered contiguous quaternary centers. The synthesis is still at an early stage but a synthetic pathway giving access to the ring B with all the key moieties has been extensively investigated.

1-Aza-2-azoniaallene salts are reactive intermediates that undergo [3+2] cycloaddition with many different types of multiple bonds. For the past several years, the Brewer group has studied the reactivity of these intermediates in intramolecular reactions, and have discovered that these cationic heteroallenes can react through a variety of other, mechanistically distinct, pathways to give different classes of nitrogen heterocycles. For example, prior work in the Brewer group revealed that 1-aza-2-azoniaallene salts could react in an intramolecular [4+2] cycloaddition reaction to give protonated azomethine imine salts containing a 1,2,3,4-tetrahydrocinnoline scaffold. Further study of the scope and limitations of this Diels-Alder-like reaction are described herein. These studies primarily focused on how varying the N-aryl ring and alkene substituents affected the reaction. We discovered that in several instances, the metal mediated reaction did not facilitate the cycloaddition very well, so we searched for alternative ways to facilitate the reaction. We discovered that a non-metallic Lewis acid (TMSOTf) provided very clean products with α-chloroazo compounds. I hypothesized that changing the leaving group adjacent to the azo might further improve the reaction. With this in mind, I developed a technique to prepare α-trifluoroacetoxyazo compounds by treating aryl hydrazones with trifluoroacetoxy dimethylsulfonium trifluoroacetate. This technique is compatible with all types of functional groups including nitro aryl compounds, which gave low yields of the corresponding chloroazo derivatives. Importantly, these α-trifluoroacetoxyazo compounds gave even better cycloaddition results when treated with TMSOTf, and this method is more practical, more environmentally friendly, and greener than the metal mediated technique. This process even returned sterically hindered products in high yield, and provide a dearomatized non-protonated azomethine imine salt, which further verified the proposed mechanism of the [4+2] cycloaddition. Azomethine imines are well known to undergo 1,3-dipolar cycloadditions with alkenes. We wondered if the protonated azomethine imine salts generated by the [4+2] cycloaddition could be used in a subsequent base-mediated [3+2] cycloaddition to generate structurally complex tetra- or pentacyclic products. We were pleased to find that the protonated azomethine imines indeed reacted smoothly with a variety of π-system in the presence of triethylamine to give the corresponding cycloadducts in high yields with moderate to high diastereoselectivities. In an attempt to understand the diastereoselectivity of these [3+2] cycloadditions better, I modeled them computationally.

Ce document présente une étude des mécanismes de relaxation de fullerènes induits par photoexcitation. Nous avons exploré les processus d'ionisation et de fragmentation de ces systèmes modèles suite à une irradiation par différentes sources de lumière : impulsion femtoseconde, laser à électron libre (IR lointain) et Synchrotron (XUV). Afin d'étudier ces mécanismes, nous utilisons l’imagerie par cartographie de vitesse qui nous permet de suivre l'évolution de la distribution angulaire de vitesse des particules émises. Suivant la durée, l'intensité et la longueur d'onde de l'excitation utilisée, la nature des mécanismes change drastiquement (mécanismes statistiques, ionisation cohérente en champ fort, autoionization de plasmons, etc…). Plusieurs approches théoriques sont utilisées allant du modèle Weisskopf pour les processus statistiques à la résolution de l'équation de Schrödinger dépendante du temps pour les processus cohérents. Cette étude permet de relier les mécanismes de relaxation intervenant à différentes échelles de temps / This document presents a study of relaxation mechanisms of fullerenes induced by photoexcitation. We have investigated ionization and fragmentation processes of these model systems under irradiation by various light sources: femtosecond pulse, free electron laser (far IR) and Synchrotron (XUV). To study these mechanisms, we use the velocity map imaging technique which allows us to follow the evolution of the angular distribution and velocity of the emitted particles. The nature of the relaxation mechanisms changes drastically (statistical mechanisms, coherent ionization in strong field, autoionization of plasmons, etc.) depending on the pulse duration, its intensity and the wavelength. Several theoretical approaches have been used including a Weisskopf modelling for the statistical processes and direct treatment of the time dependant Schrödinger equation for the coherent processes. This study allows us building bridges between the relaxation mechanisms occurring on various scales of time

Les cellules neurales expriment des molécules dites immunes qui peuvent exercer des rôles différents de ceux exercés dans le système immunitaire. Les molécules du CMH-I classiques présentent des peptides représentatifs du contenu protéique de chaque cellule aux sentinelles du système immunitaire. Cependant, il est documenté que ces molécules ont aussi des fonctions « non immunes ». En effet, les molécules du CMH-I classiques jouent un rôle dans l'établissement et la plasticité des synapses. Sur divers types cellulaires, elles peuvent aussi interagir avec des récepteurs membranaires en cis, moduler leur stabilité à la membrane et en conséquence leur activité. RAE-1 est un membre de la famille des molécules du CMH-I, décrite initialement dans le système nerveux central embryonnaire. Pour le système immunitaire, RAE-1 est un ligand du récepteur activateur NKG2D, exprimé par les cellules NK, NKT, les lymphocytes T γδ et CD8+. RAE-1 est peu ou pas exprimé dans la plupart des tissus adultes. Son expression est induite par le stress génotoxique, la transformation tumorale ou l'infection virale ce qui permet au système immunitaire d'éliminer les cellules « malades » grâce à l'activation des cellules cytotoxiques exprimant NKG2D. Je décris l'expression de RAE-1 par les cellules neurales progénitrices et le rôle non immun de cette molécule dans la prolifération cellulaire. L'expression de RAE-1 est fortement corrélée au niveau de prolifération cellulaire et est dépendante du facteur de croissance EGF. / Neural cells express immune molecules which roles differ from those in the immune system. Classical MHC-I molecules present peptides originated from the proteic content of each cell to patrolling immune cells. However, these molecules can also have nonimmune roles. Indeed, classical MHC-I molecules participate in the establishment of synapses and synaptic plasticity. They can also interact in cis with different membrane receptors on different cell types, and modulate the receptors' membrane stability and activity. RAE-1, a member of MHC-I family, was initially described in the embryonic central nervous system. In the immune system, RAE-1 is a ligand of the activating receptor NKG2D, expressed by NK cells and by NKT, γδT and some CD8+ T lymphocytes. RAE-1 is weakly or not expressed in most adult tissues. Its expression is induced by genotoxic stress, tumoral transformation or viral infection and triggers the elimination of transformed cells by the cytotoxic immune cells which express NKG2D. I describe here the expression of RAE-1 by neural progenitor cells and its role in cell proliferation. RAE-1 expression level is highly correlated with the rate of cell proliferation and depends on the presence of epidermal growth factor (EGF). Exposition to EGF induces the colocalization of RAE-1 and phosphorylated EGF-receptor (EGFR) inside lipid rafts and endocytosed vesicles, which supports a role of RAE-1 as a partner of EGFR. RAE-1 expression is also induced in the nervous tissue in different models of CNS pathologies. In these conditions, RAE-1 could be expressed by proliferating microglia under the control of M-CSF.

Le travail présenté dans cette thèse se place dans le contexte de la simulation de dommages biologiques. D'abord une étude macroscopique met en question la pertinence des plans de traitement basés sur la dose absorbée et le passage à une étude de micro-dosimétrie permet l'utilisation de paramètres biologiques plus pertinents, tels que les cassures de brins d'ADN. La validité des sections efficaces d'interaction sur lesquelles se basent ces simulations est discutée en plus de détails. Suite à la complexité du milieu biologique, les sections efficaces d'interaction avec l'eau sont souvent utilisées. Nous développons un algorithme qui permet de fournir les sections efficaces d'ionisation pour n'importe quelle cible moléculaire, en utilisant des outils qui permettent de surmonter les difficultés de calcul, ce qui rend notre programme particulièrement intéressant pour les molécules complexes. Nous fournissons des résultats pour l'eau, l'ammoniac, l'acide formique et le tétrahydrofurane. / The work presented in this thesis can be placed in the context of biological damage simulation. Webegin with a macroscopic study where we question the relevance of absorbed-dose-based treatmentplanning. Then we move on to a micro-dosimetry study where we suggest the use of morebiologically relevant probes for damage, such as DNA strand breaks. More focus is given to thefundamental considerations on which the simulations are based, particularly the interaction crosssections. Due to the complexity of the biological medium, the interaction cross sections with waterare often used to simulate the behavior of particles. We develop a parallel user-friendly algorithmthat can provide the ionization cross sections for any molecular target, making use of particular toolsthat allow to overcome the computational difficulties, which makes our program particularlyinteresting for complex molecules. We provide preliminary results for water, ammonia, formic acidand Tetrahydrofuran.