A bactéria Legionella pneumophila é um bacilo Gram-negativo, flagelado causador da doença dos legionários e febre de Pontiac. O inflamassoma mais importante no controle da replicação desta bactéria é o composto por Naip5/NLRC4, que é responsável pelo reconhecimento de flagelina. A ativação do inflamassoma de Naip5/NLRC4 pela flagelina induz a ativação de caspase-1, induzindo a formação de poros na membrana, piroptose e controle da replicação desta bactéria. A participação da proteína adaptadora ASC é essencial para a nucleação deste complexo e secreção de citocinas inflamatórias como IL-1? e IL-18 por esta via. Além do controle da replicação de L. pneumophila pelo inflamassoma NLRC4 dependente de caspase-1, foi demonstrado que existe uma via induzida por NLRC4 independente de caspase- 1/11. Dessa forma, camundongos e células Nlrc4-/- são mais susceptíveis à infecção por esta bactéria do que as células Casp1/11-/-. Neste trabalho, nós identificamos que a via independente de caspase-1/11 é composta por Naip5/NLRC4/ASC/Caspase-8 e é essencial para o controle da replicação de Legionella spp. flageladas em macrófagos e in vivo. Através da utilização de BMDMs Casp1/11-/- e Asc/Casp1/11-/- transduzidos com NLRC4-GFP ou ASC-GFP, identificamos que a formação de punctas de NLRC4 e ASC dependem do reconhecimento de flagelina e que ASC é essencial para a formação desses punctas. Também foi identificado que a infecção com L. pneumophila que expressa flagelina leva à ativação de caspase-8 de maneira dependente de ASC e Naip5, mas independente de caspase-1/11. De acordo com esses dados, o silenciamento de caspase-8 em macrófagos Casp1/11-/- aumentou a susceptibilidade dessas células à infecção com L. pneumophila flagelada. Além disso, macrófagos e camundongos Asc/Casp1/11-/- foram tão susceptíveis quanto os Nlrc4- /- e mais susceptíveis que os Casp1/11-/-. Nós observamos que o inflamassoma de NLRC4/ASC/Caspase-8 induz formação de poros e morte celular independente de gasdermina-D (GSDMD). Por meio da utilização de células de camundongos C57BL/6, foi observado que caspase-8 é recrutada para o inflamassoma de Naip5/NLRC4/ASC/Caspase-1. Entretanto, a ativação de caspase-8 só ocorre na 10 ausência de caspase-1 ou GSDMD. Nossos dados sugerem que a ativação de caspase-8 no inflamassoma composto por NLRC4/ASC/Caspase-8 representa uma via alternativa que opera para garantir o controle da replicação de bactérias flageladas em situações nas quais ou caspase-1 ou GSDMD estão inibidas. / Legionella pneumophila is a flagellated Gram-negative bacillus that is the causative agent of the legionnaire\'s disease and Pontiac fever. The most important inflammasome for the control of L. pneumophila replication is the Naip5/NLRC4, responsible for the flagellin recognition. The activation of the Naip5/NLRC4 inflammasome leads to caspase-1 activation, consequently pore formation, pyroptosis and control of bacterial replication. The participation of the adaptor molecule ASC is essential for this complex nucleation and the secretion of inflammatory cytokines like IL-1? and IL-18 by this pathway. Besides the control of L. pneumophila replication by Naip5/NLRC4/Caspase-1 inflammasome, it was demonstrated there are NLRC4 responses independent of caspase-1/11. These explain why mice and macrophages Nlrc4-/- are more susceptible than Casp1/11-/-. In this work, we identified that the caspase-1/11-independent pathway is composed of Naip5/NLRC4/ASC/Caspase-8 and it is essential for the control of flagellated Legionella spp. replication in macrophages and in vivo. Infection of Casp1/11-/- and Asc/Casp1/11-/- macrophages, transduced with NLRC4-GFP or ASC-GFP, showed that flagellin-positive bacteria triggered puncta formation that is ASC-dependent. Accordingly, Naip5 and ASC, but not caspase-1/11, were required for caspase-8 activation in response to flagellated bacteria. Silencing caspase-8 in Casp1/11-/- BMDMs increased the susceptibility to L. pneumophila infection. Furthermore, the macrophages and mice Asc/Casp1/11-/- are as susceptible as Nlrc4-/-, but more susceptible than Casp1/11-/-. We also found that the NLRC4/ASC/Caspase-8 inflammasome induces GSDMD-independent pore formation and cell death. Using C57BL/6 cells, we observed that caspase-8 is recruited to Naip5/NLRC4/ASC/Caspase-1 inflammasome. However, caspase-8 is just activated in the absence of caspase-1 or GSDMD. Our data suggest that caspase-8 activation in the NLRC4/ASC/Caspase-8 inflammasome represents an alternative pathway that operates to ensure the control of flagellated bacteria replication in situations which either caspase-1 or GSDMD are inhibited.

A bactéria Legionella pneumophila é um bacilo Gram-negativo, flagelado causador da doença dos legionários e febre de Pontiac. O inflamassoma mais importante no controle da replicação desta bactéria é o composto por Naip5/NLRC4, que é responsável pelo reconhecimento de flagelina. A ativação do inflamassoma de Naip5/NLRC4 pela flagelina induz a ativação de caspase-1, induzindo a formação de poros na membrana, piroptose e controle da replicação desta bactéria. A participação da proteína adaptadora ASC é essencial para a nucleação deste complexo e secreção de citocinas inflamatórias como IL-1? e IL-18 por esta via. Além do controle da replicação de L. pneumophila pelo inflamassoma NLRC4 dependente de caspase-1, foi demonstrado que existe uma via induzida por NLRC4 independente de caspase- 1/11. Dessa forma, camundongos e células Nlrc4-/- são mais susceptíveis à infecção por esta bactéria do que as células Casp1/11-/-. Neste trabalho, nós identificamos que a via independente de caspase-1/11 é composta por Naip5/NLRC4/ASC/Caspase-8 e é essencial para o controle da replicação de Legionella spp. flageladas em macrófagos e in vivo. Através da utilização de BMDMs Casp1/11-/- e Asc/Casp1/11-/- transduzidos com NLRC4-GFP ou ASC-GFP, identificamos que a formação de punctas de NLRC4 e ASC dependem do reconhecimento de flagelina e que ASC é essencial para a formação desses punctas. Também foi identificado que a infecção com L. pneumophila que expressa flagelina leva à ativação de caspase-8 de maneira dependente de ASC e Naip5, mas independente de caspase-1/11. De acordo com esses dados, o silenciamento de caspase-8 em macrófagos Casp1/11-/- aumentou a susceptibilidade dessas células à infecção com L. pneumophila flagelada. Além disso, macrófagos e camundongos Asc/Casp1/11-/- foram tão susceptíveis quanto os Nlrc4- /- e mais susceptíveis que os Casp1/11-/-. Nós observamos que o inflamassoma de NLRC4/ASC/Caspase-8 induz formação de poros e morte celular independente de gasdermina-D (GSDMD). Por meio da utilização de células de camundongos C57BL/6, foi observado que caspase-8 é recrutada para o inflamassoma de Naip5/NLRC4/ASC/Caspase-1. Entretanto, a ativação de caspase-8 só ocorre na 10 ausência de caspase-1 ou GSDMD. Nossos dados sugerem que a ativação de caspase-8 no inflamassoma composto por NLRC4/ASC/Caspase-8 representa uma via alternativa que opera para garantir o controle da replicação de bactérias flageladas em situações nas quais ou caspase-1 ou GSDMD estão inibidas. / Legionella pneumophila is a flagellated Gram-negative bacillus that is the causative agent of the legionnaire\'s disease and Pontiac fever. The most important inflammasome for the control of L. pneumophila replication is the Naip5/NLRC4, responsible for the flagellin recognition. The activation of the Naip5/NLRC4 inflammasome leads to caspase-1 activation, consequently pore formation, pyroptosis and control of bacterial replication. The participation of the adaptor molecule ASC is essential for this complex nucleation and the secretion of inflammatory cytokines like IL-1? and IL-18 by this pathway. Besides the control of L. pneumophila replication by Naip5/NLRC4/Caspase-1 inflammasome, it was demonstrated there are NLRC4 responses independent of caspase-1/11. These explain why mice and macrophages Nlrc4-/- are more susceptible than Casp1/11-/-. In this work, we identified that the caspase-1/11-independent pathway is composed of Naip5/NLRC4/ASC/Caspase-8 and it is essential for the control of flagellated Legionella spp. replication in macrophages and in vivo. Infection of Casp1/11-/- and Asc/Casp1/11-/- macrophages, transduced with NLRC4-GFP or ASC-GFP, showed that flagellin-positive bacteria triggered puncta formation that is ASC-dependent. Accordingly, Naip5 and ASC, but not caspase-1/11, were required for caspase-8 activation in response to flagellated bacteria. Silencing caspase-8 in Casp1/11-/- BMDMs increased the susceptibility to L. pneumophila infection. Furthermore, the macrophages and mice Asc/Casp1/11-/- are as susceptible as Nlrc4-/-, but more susceptible than Casp1/11-/-. We also found that the NLRC4/ASC/Caspase-8 inflammasome induces GSDMD-independent pore formation and cell death. Using C57BL/6 cells, we observed that caspase-8 is recruited to Naip5/NLRC4/ASC/Caspase-1 inflammasome. However, caspase-8 is just activated in the absence of caspase-1 or GSDMD. Our data suggest that caspase-8 activation in the NLRC4/ASC/Caspase-8 inflammasome represents an alternative pathway that operates to ensure the control of flagellated bacteria replication in situations which either caspase-1 or GSDMD are inhibited.

La réplication de l’ADN est une fonction cellulaire responsable de la duplication du matériel génétique. Elle est assurée par un complexe protéique appelé réplisome. Ce processus est hautement régulé en fonction des conditions de croissance cellulaire. Durant cette thèse je me suis intéressé principalement au contrôle de la réplication par le Métabolisme Central Carboné (MCC) et, dans une moindre mesure, au fonctionnement du réplisome chez la bactérie modèle Bacillus subtilis. J’ai analysé la réplication de l’ADN dans des mutants métaboliques, par deux techniques ; la QPCR et la cytométrie en flux. Mes analyses révèlent que la réplication de l’ADN est dérégulée dans des cellules mutées dans les cinq dernières réactions de la glycolyse et dans celles affectées dans des réactions connectant cette petite région du métabolisme aux autres réactions du MCC (haut de la glycolyse, voie des pentoses phosphate et cycle de Krebs) et au milieu extérieur (voies overflow qui éliminent les métabolites du MCC produits en excès). J’ai constaté que dans ces mutants la réplication commence plutôt et dure plus longtemps que dans une souche sauvage. L’ensemble de ces résultats montre que les réactions situées au cœur du MCC sont importantes pour assurer un bon contrôle temporel de la réplication. J’ai aussi établi que le ppGpp, une petite molécule fonctionnant comme une alarmone de l’état nutritionnelle des cellules, ne joue pas un rôle déterminant dans le contrôle de la réplication par le métabolisme dans des cellules à l’état d’équilibre. L’ensemble de nos connaissances actuelles sur les réplisomes repose essentiellement sur les données accumulées à partir de la dissection du réplisome de la bactérie modèle Escherichia coli et des phages T4 et T7. Chez Bacillus subtilis, deuxième modèle bactérien le mieux connu et représentant des Gram+ à faible GC%, il existe deux ADN polymérases essentielles à la réplication : PolC et DnaE. Nous avons montré que DnaE, comme PolC, fait partie du réplisome. Nos études fournissent une explication moléculaire à la spécialisation de DnaE dans la synthèse du brin d’ADN discontinu. En conclusion, nos résultats montrent que les réplisomes bactériens ont beaucoup plus évolué qu’attendu tant dans leur composition protéique que dans leur organisation et leur fonctionnement. Ils montrent également, et pour la première fois, que le contrôle temporel de la réplication dépend de réactions situées au cœur du MCC chez B. subtilis. Ces données et d’autres de la littérature suggèrent que cette propriété pourrait être universelle et pourrait jouer un rôle important dans la carcinogenèse. / DNA replication is a central cellular function for the duplication of the genetic material. A protein complex that is called replisome carries out this function. The process of replication is highly regulated with respect to cell growth conditions. During my thesis I was primarily interested in the control of replication by the central carbon metabolism (CCM) and to a lesser extent, to the functioning of the replisome in the bacterium Bacillus subtilis. The thesis studied the DNA replication in metabolic mutants by employing two techniques; QPCR and flow cytometry. The analyses showed that DNA replication is deregulated in cells that carry the following mutations: First, cells with mutations in the last 5 reactions of glycolysis. Second, cells with mutations in the reactions that connect the last part of glycolysis to the other parts of CCM (upper part of glycolysis pathway, pentose phosphate and Krebs cycle). Third, cells mutated in the overflow genes (channels that eliminate overflow metabolites produced in excess in CCM). The results demonstrate that in these mutants the replication begins and lasts longer than in the wild strain. All of these results show that the reactions that are centrally located to the CCM are important to ensure a correct control of replication timing. I also found that the ppGpp, a small molecule that functions as an alarmone of nutritional state in the cells, does not play a decisive role in the control of replication by metabolism in cells in steady state. The current knowledge of replisomes is mainly based on accumulated data from the dissection of the replisome of the model bacterium Escherichia coli and the phages T4 and T7. Bacillus subtilis is the second well studied bacterial model, a representative of Gram+ low GC%, it carries –unlike E. coli- two essential DNA polymerases for replication: PolC and DnaE. The thesis showed that DnaE as PolC form a part of the replisome in B. subtilis and provide a molecular explanation to the specialization of DnaE in the synthesis of the DNA lagging strand. In conclusion, the results show that there is much more diversity in the protein composition, organization and functioning of replisomes in bacteria than it is expected. In addition, the thesis concluded for the first time that the temporal control of replication depends on reactions located in the heart of CCM in B. subtilis. This property, in combination with other data from the literature, suggests that it could be universal and play an important role in carcinogenesis.